Guide to the Human Genome
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Name: LOC100293689 Sequence: fasta or formatted (96aa) NCBI GI: 239756908
Description:

PREDICTED: similar to chorionic somatomammotropin hormone 2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.1          2           1
 C cysteine            3.1          3           1
 D aspartate          10.4         10           2
 E glutamate           5.2          5           2
 F phenylalanine       5.2          5           1
 G glycine             7.3          7           1
 H histidine           3.1          3           1
 I isoleucine          2.1          2           1
 K lysine              6.2          6           1
 L leucine            12.5         12           2
 M methionine          4.2          4           1
 N asparagine          5.2          5           2
 P proline             0.0          0           0
 Q glutamine           4.2          4           1
 R arginine            6.2          6           2
 S serine              7.3          7           1
 T threonine           6.2          6           1
 V valine              4.2          4           1
 W tryptophan          0.0          0           0
 Y tyrosine            5.2          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to chorionic somatomammotropin h... 
CSH1                  1.000   chorionic somatomammotropin hormone 1 isoform 1 [Homo...
CSH2                  1.000   chorionic somatomammotropin hormone 2 isoform 1 [Hom...
CSHL1                 0.920   chorionic somatomammotropin hormone-like 1 isoform 2...
CSHL1                 0.920   chorionic somatomammotropin hormone-like 1 isoform 4...
CSHL1                 0.920   chorionic somatomammotropin hormone-like 1 isoform 1...
CSHL1                 0.920   chorionic somatomammotropin hormone-like 1 isoform 3...
GH1                   0.852   growth hormone 1 isoform 1 
GH1                   0.852   growth hormone 1 isoform 3 
GH1                   0.852   growth hormone 1 isoform 2 
GH2                   0.790   growth hormone 2 isoform 1 
GH2                   0.790   growth hormone 2 isoform 4 
CSH1                  0.648   chorionic somatomammotropin hormone 1 isoform 3 [Hom...
CSH2                  0.648   chorionic somatomammotropin hormone 2 isoform 3 [Hom...
GH1                   0.591   growth hormone 1 isoform 4 
CSH1                  0.239   chorionic somatomammotropin hormone 1 isoform 2 [Hom...
CSH2                  0.239   chorionic somatomammotropin hormone 2 isoform 2 [Hom...
GH2                   0.119   growth hormone 2 isoform 3 
GH2                   0.114   growth hormone 2 isoform 2 
PRL                   0.051   prolactin precursor 
RYR3                  0.023   ryanodine receptor 3 
RYR2                  0.017   cardiac muscle ryanodine receptor 
CLSTN2                0.017   calsyntenin 2 
PHKB                  0.017   phosphorylase kinase, beta isoform b 
PHKB                  0.017   phosphorylase kinase, beta isoform a 
RYR1                  0.011   skeletal muscle ryanodine receptor isoform 2 
RYR1                  0.011   skeletal muscle ryanodine receptor isoform 1 
TBC1D22B              0.011   TBC1 domain family, member 22B 
BRD8                  0.011   bromodomain containing 8 isoform 3 
BRD8                  0.011   bromodomain containing 8 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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