Guide to the Human Genome
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Name: LOC100292542 Sequence: fasta or formatted (113aa) NCBI GI: 239756291
Description:

PREDICTED: similar to creatine kinase, mitochondrial 1B

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.7          3           2
 C cysteine            1.8          2           1
 D aspartate           6.2          7           1
 E glutamate           5.3          6           1
 F phenylalanine       1.8          2           1
 G glycine            10.6         12           2
 H histidine           2.7          3           1
 I isoleucine          8.0          9           1
 K lysine              5.3          6           1
 L leucine            14.2         16           2
 M methionine          0.9          1           1
 N asparagine          4.4          5           1
 P proline             4.4          5           1
 Q glutamine           2.7          3           1
 R arginine            8.8         10           2
 S serine              4.4          5           1
 T threonine           6.2          7           1
 V valine              7.1          8           1
 W tryptophan          0.9          1           1
 Y tyrosine            1.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to creatine kinase, mitochondria... 
CKMT1B                1.000   creatine kinase, mitochondrial 1B precursor 
CKMT1A                1.000   creatine kinase, mitochondrial 1A precursor 
CKMT2                 0.805   sarcomeric mitochondrial creatine kinase precursor ...
CKMT2                 0.805   sarcomeric mitochondrial creatine kinase precursor ...
CKMT2                 0.805   sarcomeric mitochondrial creatine kinase precursor ...
CKB                   0.649   brain creatine kinase 
CKM                   0.615   muscle creatine kinase 
NAT2                  0.020   N-acetyltransferase 2 
CDH5                  0.010   cadherin 5, type 2 preproprotein 
MFSD2B                0.005   major facilitator superfamily domain-containing pro...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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