Guide to the Human Genome
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Name: LOC100292858 Sequence: fasta or formatted (259aa) NCBI GI: 239756205
Description:

PREDICTED: similar to hCG2029977

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2         11           2
 C cysteine            3.9         10           2
 D aspartate           4.6         12           1
 E glutamate           3.1          8           1
 F phenylalanine       2.7          7           2
 G glycine             8.5         22           2
 H histidine           3.1          8           2
 I isoleucine          5.4         14           3
 K lysine              5.8         15           1
 L leucine             8.9         23           3
 M methionine          1.2          3           1
 N asparagine          3.5          9           2
 P proline             3.9         10           2
 Q glutamine           3.9         10           1
 R arginine            3.1          8           1
 S serine             13.5         35           3
 T threonine           6.6         17           1
 V valine              8.5         22           1
 W tryptophan          3.9         10           2
 Y tyrosine            1.9          5           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2029977 
LOC100134397          0.463   PREDICTED: similar to hCG1812074 
LOC642131             0.463   PREDICTED: similar to hCG1812074 
LOC642131             0.463   PREDICTED: similar to hCG1812074 
LOC100289944          0.463   PREDICTED: hypothetical protein XP_002347520 
LOC642131             0.459   PREDICTED: similar to hCG1812074 
LOC100290006          0.196   PREDICTED: hypothetical protein XP_002347521 
LOC100291190          0.194   PREDICTED: hypothetical protein XP_002347529 
LOC100293211          0.192   PREDICTED: similar to hCG2042717 
LOC100290036          0.192   PREDICTED: hypothetical protein XP_002347522 
LOC100293270          0.182   PREDICTED: similar to hCG2042717 
LOC100290320          0.182   PREDICTED: hypothetical protein XP_002347525 
LOC100290738          0.180   PREDICTED: hypothetical protein XP_002348171 
LOC100287372          0.180   PREDICTED: hypothetical protein XP_002343513 
LOC100290115          0.180   PREDICTED: hypothetical protein XP_002347523 
LOC401847             0.180   PREDICTED: similar to hCG1793095 
LOC100289290          0.178   PREDICTED: hypothetical protein XP_002343511 
LOC652494             0.174   PREDICTED: similar to hCG2042717 
LOC646057             0.174   PREDICTED: similar to hCG2003024 
LOC100132941          0.174   PREDICTED: similar to Ig heavy chain 
LOC646057             0.172   PREDICTED: similar to hCG2003024 
LOC100133862          0.165   PREDICTED: similar to hCG1773549 
LOC100132941          0.163   PREDICTED: similar to Ig heavy chain 
LOC646057             0.161   PREDICTED: similar to hCG2003024 
LOC100291056          0.159   PREDICTED: hypothetical protein XP_002347527 
LOC100292999          0.153   PREDICTED: hypothetical protein 
LOC100292483          0.151   PREDICTED: similar to pre-B lymphocyte gene 2 [Homo...
LOC100290448          0.151   PREDICTED: hypothetical protein XP_002347494 
LOC100290146          0.149   PREDICTED: hypothetical protein XP_002347524 
LOC100130811          0.141   PREDICTED: similar to hCG2038921 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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