Guide to the Human Genome
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Name: LOC100290006 Sequence: fasta or formatted (151aa) NCBI GI: 239750741
Description:

PREDICTED: hypothetical protein XP_002347521

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.6          4           1
 C cysteine            4.0          6           1
 D aspartate           4.0          6           2
 E glutamate           1.3          2           1
 F phenylalanine       2.0          3           1
 G glycine             6.0          9           1
 H histidine           2.6          4           1
 I isoleucine          3.3          5           1
 K lysine              6.0          9           1
 L leucine            14.6         22           4
 M methionine          2.0          3           1
 N asparagine          2.6          4           1
 P proline             7.9         12           2
 Q glutamine           3.3          5           1
 R arginine            4.0          6           1
 S serine              9.9         15           1
 T threonine          12.6         19           1
 V valine              5.3          8           2
 W tryptophan          2.6          4           1
 Y tyrosine            3.3          5           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347521 
LOC100134397          0.350   PREDICTED: similar to hCG1812074 
LOC642131             0.350   PREDICTED: similar to hCG1812074 
LOC642131             0.350   PREDICTED: similar to hCG1812074 
LOC100292858          0.344   PREDICTED: similar to hCG2029977 
LOC100289944          0.344   PREDICTED: hypothetical protein XP_002347520 
LOC642131             0.340   PREDICTED: similar to hCG1812074 
LOC652494             0.245   PREDICTED: similar to hCG2042717 
LOC100291190          0.224   PREDICTED: hypothetical protein XP_002347529 
LOC100292999          0.221   PREDICTED: hypothetical protein 
LOC100132941          0.218   PREDICTED: similar to Ig heavy chain 
LOC100290036          0.211   PREDICTED: hypothetical protein XP_002347522 
LOC100293270          0.211   PREDICTED: similar to hCG2042717 
LOC100290320          0.211   PREDICTED: hypothetical protein XP_002347525 
LOC100289290          0.211   PREDICTED: hypothetical protein XP_002343511 
LOC100290115          0.207   PREDICTED: hypothetical protein XP_002347523 
LOC100132941          0.207   PREDICTED: similar to Ig heavy chain 
LOC100293211          0.204   PREDICTED: similar to hCG2042717 
LOC100292483          0.190   PREDICTED: similar to pre-B lymphocyte gene 2 [Homo...
LOC100290448          0.190   PREDICTED: hypothetical protein XP_002347494 
LOC100291056          0.187   PREDICTED: hypothetical protein XP_002347527 
LOC646057             0.184   PREDICTED: similar to hCG2003024 
LOC100290738          0.177   PREDICTED: hypothetical protein XP_002348171 
LOC646057             0.177   PREDICTED: similar to hCG2003024 
LOC100287372          0.177   PREDICTED: hypothetical protein XP_002343513 
LOC100130811          0.170   PREDICTED: similar to hCG2038921 
LOC100130811          0.170   PREDICTED: similar to hCG2038921 
LOC100290146          0.170   PREDICTED: hypothetical protein XP_002347524 
LOC646057             0.170   PREDICTED: similar to hCG2003024 
LOC100290415          0.167   PREDICTED: hypothetical protein XP_002347493 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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