Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100293798 Sequence: fasta or formatted (107aa) NCBI GI: 239755943
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4          9           3
 C cysteine            0.0          0           0
 D aspartate           2.8          3           1
 E glutamate           5.6          6           2
 F phenylalanine       0.0          0           0
 G glycine            15.9         17           3
 H histidine           0.0          0           0
 I isoleucine          0.0          0           0
 K lysine              3.7          4           1
 L leucine             8.4          9           2
 M methionine          0.9          1           1
 N asparagine          0.0          0           0
 P proline            16.8         18           3
 Q glutamine           6.5          7           2
 R arginine           18.7         20           4
 S serine              7.5          8           1
 T threonine           0.9          1           1
 V valine              1.9          2           1
 W tryptophan          1.9          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
PRH1                  0.075   proline-rich protein HaeIII subfamily 1 
PRH2                  0.075   proline-rich protein HaeIII subfamily 2 
PRH2                  0.075   proline-rich protein HaeIII subfamily 2 
LOC100291634          0.075   PREDICTED: hypothetical protein XP_002346062 
LOC100291533          0.075   PREDICTED: hypothetical protein XP_002347080 
LOC100288002          0.075   PREDICTED: hypothetical protein XP_002342946 
LOC100287232          0.075   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.075   PREDICTED: hypothetical protein 
LOC100291096          0.070   PREDICTED: hypothetical protein XP_002346952 
PRB3                  0.060   proline-rich protein BstNI subfamily 3 precursor [H...
LOC100292370          0.060   PREDICTED: hypothetical protein 
WIPF1                 0.060   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.060   WAS/WASL interacting protein family, member 1 
AVEN                  0.060   cell death regulator aven 
ADRA2C                0.055   alpha-2C-adrenergic receptor 
LOC100292913          0.055   PREDICTED: hypothetical protein 
LOC100290124          0.055   PREDICTED: hypothetical protein XP_002347307 
LOC100288752          0.055   PREDICTED: hypothetical protein XP_002343173 
LOC440017             0.055   PREDICTED: similar to double homeobox, 4 
LOC728022             0.055   PREDICTED: similar to double homeobox, 4 
LOC100289581          0.055   PREDICTED: hypothetical protein XP_002343082 
LOC440014             0.055   PREDICTED: similar to double homeobox, 4 
LOC399839             0.055   PREDICTED: similar to double homeobox, 4 
LOC440013             0.055   PREDICTED: similar to double homeobox, 4 
LOC441056             0.055   PREDICTED: double homeobox, 4-like 
SRCAP                 0.055   Snf2-related CBP activator protein 
LOC100129098          0.050   PREDICTED: hypothetical protein 
LOC100131455          0.050   PREDICTED: hypothetical protein 
LOC728650             0.050   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press