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Search of human proteins with 239755913
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755913 PREDICTED: hypothetical protein [Homo sapiens]
(340 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755913 PREDICTED: hypothetical protein [Homo sapiens] 676 0.0
gi|239750427 PREDICTED: hypothetical protein XP_002347392 [Homo ... 676 0.0
gi|239744729 PREDICTED: hypothetical protein XP_002343255 [Homo ... 676 0.0
gi|126116565 MYC binding protein 2 [Homo sapiens] 45 1e-04
gi|126131099 guanine nucleotide exchange factor p532 [Homo sapiens] 45 1e-04
gi|217416372 coiled-coil domain containing 142 [Homo sapiens] 30 2.4
gi|62865631 solute carrier family 27 (fatty acid transporter), m... 30 2.4
gi|13325055 solute carrier family 27 (fatty acid transporter), m... 30 2.4
gi|15147248 epithelial stromal interaction 1 isoform 2 [Homo sap... 30 2.4
gi|34147522 chaperone, ABC1 activity of bc1 complex like precurs... 30 3.1
gi|52317190 olfactory receptor, family 2, subfamily AK, member 2... 30 3.1
gi|196115290 glial fibrillary acidic protein isoform 2 [Homo sap... 30 4.0
gi|4503979 glial fibrillary acidic protein isoform 1 [Homo sapiens] 30 4.0
gi|40254434 phosphodiesterase 3B [Homo sapiens] 29 5.3
gi|239754162 PREDICTED: hypothetical protein [Homo sapiens] 29 5.3
gi|239748672 PREDICTED: hypothetical protein XP_002346774 [Homo ... 29 5.3
gi|239742697 PREDICTED: hypothetical protein XP_002342608 [Homo ... 29 5.3
gi|166235184 KIAA1274 [Homo sapiens] 29 6.9
gi|221316695 multimerin 2 precursor [Homo sapiens] 29 6.9
gi|51896031 hypothetical protein LOC285636 [Homo sapiens] 28 9.0
>gi|239755913 PREDICTED: hypothetical protein [Homo sapiens]
Length = 340
Score = 676 bits (1744), Expect = 0.0
Identities = 340/340 (100%), Positives = 340/340 (100%)
Query: 1 MGSSAAAAAAAAAAADSAQWLSVKEETIFLHDGLIRVTDLAELPSEILGAPEAADTDLEI 60
MGSSAAAAAAAAAAADSAQWLSVKEETIFLHDGLIRVTDLAELPSEILGAPEAADTDLEI
Sbjct: 1 MGSSAAAAAAAAAAADSAQWLSVKEETIFLHDGLIRVTDLAELPSEILGAPEAADTDLEI 60
Query: 61 LTFETKNPSELAERLRSVCGNQSNAYARLLEYRLNALRGLWNAQRQLALEEQHERESSGD 120
LTFETKNPSELAERLRSVCGNQSNAYARLLEYRLNALRGLWNAQRQLALEEQHERESSGD
Sbjct: 61 LTFETKNPSELAERLRSVCGNQSNAYARLLEYRLNALRGLWNAQRQLALEEQHERESSGD 120
Query: 121 EETLALLKRQGLLQQPEQAPFTSRMGLLLVFPLIQSQSRTDPSLCNITAEVLLNCLRDCQ 180
EETLALLKRQGLLQQPEQAPFTSRMGLLLVFPLIQSQSRTDPSLCNITAEVLLNCLRDCQ
Sbjct: 121 EETLALLKRQGLLQQPEQAPFTSRMGLLLVFPLIQSQSRTDPSLCNITAEVLLNCLRDCQ 180
Query: 181 PLSLTKEPADCLNGIETLLCSWLEETSDTGRHIPHKQKENAAAALVALACARGSLKTFVH 240
PLSLTKEPADCLNGIETLLCSWLEETSDTGRHIPHKQKENAAAALVALACARGSLKTFVH
Sbjct: 181 PLSLTKEPADCLNGIETLLCSWLEETSDTGRHIPHKQKENAAAALVALACARGSLKTFVH 240
Query: 241 TVHLLQKQTDLGSLPVADVLYRGFVYCRNEELEPGWVAFGSGSLLHRPVSFDNKPHSLFQ 300
TVHLLQKQTDLGSLPVADVLYRGFVYCRNEELEPGWVAFGSGSLLHRPVSFDNKPHSLFQ
Sbjct: 241 TVHLLQKQTDLGSLPVADVLYRGFVYCRNEELEPGWVAFGSGSLLHRPVSFDNKPHSLFQ 300
Query: 301 VIDQNTLQTKQVWKKVHVKSIEGSEIALGKLVPPPKVMGN 340
VIDQNTLQTKQVWKKVHVKSIEGSEIALGKLVPPPKVMGN
Sbjct: 301 VIDQNTLQTKQVWKKVHVKSIEGSEIALGKLVPPPKVMGN 340
>gi|239750427 PREDICTED: hypothetical protein XP_002347392 [Homo
sapiens]
Length = 340
Score = 676 bits (1744), Expect = 0.0
Identities = 340/340 (100%), Positives = 340/340 (100%)
Query: 1 MGSSAAAAAAAAAAADSAQWLSVKEETIFLHDGLIRVTDLAELPSEILGAPEAADTDLEI 60
MGSSAAAAAAAAAAADSAQWLSVKEETIFLHDGLIRVTDLAELPSEILGAPEAADTDLEI
Sbjct: 1 MGSSAAAAAAAAAAADSAQWLSVKEETIFLHDGLIRVTDLAELPSEILGAPEAADTDLEI 60
Query: 61 LTFETKNPSELAERLRSVCGNQSNAYARLLEYRLNALRGLWNAQRQLALEEQHERESSGD 120
LTFETKNPSELAERLRSVCGNQSNAYARLLEYRLNALRGLWNAQRQLALEEQHERESSGD
Sbjct: 61 LTFETKNPSELAERLRSVCGNQSNAYARLLEYRLNALRGLWNAQRQLALEEQHERESSGD 120
Query: 121 EETLALLKRQGLLQQPEQAPFTSRMGLLLVFPLIQSQSRTDPSLCNITAEVLLNCLRDCQ 180
EETLALLKRQGLLQQPEQAPFTSRMGLLLVFPLIQSQSRTDPSLCNITAEVLLNCLRDCQ
Sbjct: 121 EETLALLKRQGLLQQPEQAPFTSRMGLLLVFPLIQSQSRTDPSLCNITAEVLLNCLRDCQ 180
Query: 181 PLSLTKEPADCLNGIETLLCSWLEETSDTGRHIPHKQKENAAAALVALACARGSLKTFVH 240
PLSLTKEPADCLNGIETLLCSWLEETSDTGRHIPHKQKENAAAALVALACARGSLKTFVH
Sbjct: 181 PLSLTKEPADCLNGIETLLCSWLEETSDTGRHIPHKQKENAAAALVALACARGSLKTFVH 240
Query: 241 TVHLLQKQTDLGSLPVADVLYRGFVYCRNEELEPGWVAFGSGSLLHRPVSFDNKPHSLFQ 300
TVHLLQKQTDLGSLPVADVLYRGFVYCRNEELEPGWVAFGSGSLLHRPVSFDNKPHSLFQ
Sbjct: 241 TVHLLQKQTDLGSLPVADVLYRGFVYCRNEELEPGWVAFGSGSLLHRPVSFDNKPHSLFQ 300
Query: 301 VIDQNTLQTKQVWKKVHVKSIEGSEIALGKLVPPPKVMGN 340
VIDQNTLQTKQVWKKVHVKSIEGSEIALGKLVPPPKVMGN
Sbjct: 301 VIDQNTLQTKQVWKKVHVKSIEGSEIALGKLVPPPKVMGN 340
>gi|239744729 PREDICTED: hypothetical protein XP_002343255 [Homo
sapiens]
Length = 340
Score = 676 bits (1744), Expect = 0.0
Identities = 340/340 (100%), Positives = 340/340 (100%)
Query: 1 MGSSAAAAAAAAAAADSAQWLSVKEETIFLHDGLIRVTDLAELPSEILGAPEAADTDLEI 60
MGSSAAAAAAAAAAADSAQWLSVKEETIFLHDGLIRVTDLAELPSEILGAPEAADTDLEI
Sbjct: 1 MGSSAAAAAAAAAAADSAQWLSVKEETIFLHDGLIRVTDLAELPSEILGAPEAADTDLEI 60
Query: 61 LTFETKNPSELAERLRSVCGNQSNAYARLLEYRLNALRGLWNAQRQLALEEQHERESSGD 120
LTFETKNPSELAERLRSVCGNQSNAYARLLEYRLNALRGLWNAQRQLALEEQHERESSGD
Sbjct: 61 LTFETKNPSELAERLRSVCGNQSNAYARLLEYRLNALRGLWNAQRQLALEEQHERESSGD 120
Query: 121 EETLALLKRQGLLQQPEQAPFTSRMGLLLVFPLIQSQSRTDPSLCNITAEVLLNCLRDCQ 180
EETLALLKRQGLLQQPEQAPFTSRMGLLLVFPLIQSQSRTDPSLCNITAEVLLNCLRDCQ
Sbjct: 121 EETLALLKRQGLLQQPEQAPFTSRMGLLLVFPLIQSQSRTDPSLCNITAEVLLNCLRDCQ 180
Query: 181 PLSLTKEPADCLNGIETLLCSWLEETSDTGRHIPHKQKENAAAALVALACARGSLKTFVH 240
PLSLTKEPADCLNGIETLLCSWLEETSDTGRHIPHKQKENAAAALVALACARGSLKTFVH
Sbjct: 181 PLSLTKEPADCLNGIETLLCSWLEETSDTGRHIPHKQKENAAAALVALACARGSLKTFVH 240
Query: 241 TVHLLQKQTDLGSLPVADVLYRGFVYCRNEELEPGWVAFGSGSLLHRPVSFDNKPHSLFQ 300
TVHLLQKQTDLGSLPVADVLYRGFVYCRNEELEPGWVAFGSGSLLHRPVSFDNKPHSLFQ
Sbjct: 241 TVHLLQKQTDLGSLPVADVLYRGFVYCRNEELEPGWVAFGSGSLLHRPVSFDNKPHSLFQ 300
Query: 301 VIDQNTLQTKQVWKKVHVKSIEGSEIALGKLVPPPKVMGN 340
VIDQNTLQTKQVWKKVHVKSIEGSEIALGKLVPPPKVMGN
Sbjct: 301 VIDQNTLQTKQVWKKVHVKSIEGSEIALGKLVPPPKVMGN 340
>gi|126116565 MYC binding protein 2 [Homo sapiens]
Length = 4640
Score = 44.7 bits (104), Expect = 1e-04
Identities = 39/117 (33%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 116 ESSGDEETLALLKRQGLLQQPEQAPFTSRMGLLLVFPLIQSQSRTDPSLCNITAEVLLNC 175
ES DEE + + P + P +GL VF LI+ + PSLC + + LLN
Sbjct: 142 ESDSDEE-------EESKEPPIKLPKIIEVGLCEVFELIKETRFSHPSLCLRSLQALLNV 194
Query: 176 LRDCQPLSLTKEPADCLNGIETLLCSWLEET-SDTGRHIPHKQKENAAAALVALACA 231
L+ QP L EP + L + LL LE T TG ++ +L AL+CA
Sbjct: 195 LQGQQPEGLQSEPPEVLESLFQLL---LEITVRSTG------MNDSTGQSLTALSCA 242
>gi|126131099 guanine nucleotide exchange factor p532 [Homo sapiens]
Length = 4861
Score = 44.7 bits (104), Expect = 1e-04
Identities = 62/279 (22%), Positives = 112/279 (40%), Gaps = 48/279 (17%)
Query: 16 DSAQWLSVKEETIFLHDGLIRVTDLAELPSEIL--GAPEAADTDLEILTFETKN------ 67
+ ++ ++ +E L+ L+ ++ LP ++L P+ D + E L+ + ++
Sbjct: 23 EDSESIATREGVAVLYSKLVSNKEVVPLPQQVLCLKGPQLPDFERESLSSDEQDHYLDAL 82
Query: 68 -PSELAERLRSVCGNQSNAYARLLEYRLNALRGLWNA------QRQLALEEQHERESSGD 120
S+LA + VC + + +A L RL L+ ++ A + ++QH ESS
Sbjct: 83 LSSQLA-LAKMVCSD--SPFAGALRKRLLVLQRVFYALSNKYHDKGKVKQQQHSPESSSG 139
Query: 121 EETLALLKRQGLLQQPEQAPFTSRMGLLLVFPLIQSQ-----SRTDPSLCNITAEVLLNC 175
+ + + R GL L+F L++ S SLCN +
Sbjct: 140 SADVHSVSERPRSSTDALIEMGVRTGLSLLFALLRQSWMMPVSGPGLSLCNDVIHTAIEV 199
Query: 176 LRDCQPLSLTKEP------ADCLNGIETLLCSWLEETSDTGRHIPHKQKEN-----AAAA 224
+ PLSL E DCL+ + T L G IP+ + A+
Sbjct: 200 VSSLPPLSLANESKIPPMGLDCLSQVTTFL---------KGVTIPNSGADTLGRRLASEL 250
Query: 225 LVALACARGSLKTFVHTVHLLQKQTDLGSLPVADVLYRG 263
L+ LA RGSL+ + + + LG+ V + +G
Sbjct: 251 LLGLAAQRGSLRYLLEWIEMA-----LGASAVVHTMEKG 284
Score = 28.5 bits (62), Expect = 9.0
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Query: 64 ETKNPSELAERLRSVCGNQSNAYARLLEYRLNALRGLWNAQRQLALEEQHERESSGDEET 123
E K P ELA L + C L RL++ W AQ+ + H+R++ +T
Sbjct: 3359 EKKGPLELANALAACC----------LSSRLSSQHRQWAAQQLVRTLAAHDRDNQTTLQT 3408
Query: 124 LA 125
LA
Sbjct: 3409 LA 3410
>gi|217416372 coiled-coil domain containing 142 [Homo sapiens]
Length = 743
Score = 30.4 bits (67), Expect = 2.4
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 19/90 (21%)
Query: 109 LEEQHERESSGDEETLALLKRQGLLQQPEQAPFTSRMGLLLVFPLIQSQSRTDPSLCNIT 168
LEE+ S +TL +L + QQ + A + LL PL +SQ P C
Sbjct: 610 LEEEQWSLSPDLRQTLLMLS---IFQQLDGA-----LLCLLQQPLPKSQVHRRPPCC--- 658
Query: 169 AEVLLNCLRDCQPLSLTKEPADCLNGIETL 198
C CQ + TK P+ CLN +E+L
Sbjct: 659 ------CA--CQEVQTTKLPSSCLNSLESL 680
>gi|62865631 solute carrier family 27 (fatty acid transporter),
member 6 [Homo sapiens]
Length = 619
Score = 30.4 bits (67), Expect = 2.4
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 166 NITAEVLLNCLRDCQPLSLTKEPADCLNGIETLLCSWLEETSDTG 210
NI + LLNC+R C P +L AD L +E +L S E S G
Sbjct: 138 NIRSNSLLNCIRACGPRALV-VGADLLGTVEEILPSLSENISVWG 181
>gi|13325055 solute carrier family 27 (fatty acid transporter),
member 6 [Homo sapiens]
Length = 619
Score = 30.4 bits (67), Expect = 2.4
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 166 NITAEVLLNCLRDCQPLSLTKEPADCLNGIETLLCSWLEETSDTG 210
NI + LLNC+R C P +L AD L +E +L S E S G
Sbjct: 138 NIRSNSLLNCIRACGPRALV-VGADLLGTVEEILPSLSENISVWG 181
>gi|15147248 epithelial stromal interaction 1 isoform 2 [Homo
sapiens]
Length = 307
Score = 30.4 bits (67), Expect = 2.4
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 9/63 (14%)
Query: 77 SVCGNQSNAYARLLEYRLNALRGLWNAQRQLALEEQHERESSGDEETLALLKRQGLLQQP 136
+VCG QS+ +AR YR ++L+ N + Q +EQH++ L LKRQ Q+
Sbjct: 210 AVCGPQSSTWARSWAYR-DSLKAEENRKLQKMKDEQHQKSE------LLELKRQ--QQEQ 260
Query: 137 EQA 139
E+A
Sbjct: 261 ERA 263
>gi|34147522 chaperone, ABC1 activity of bc1 complex like precursor
[Homo sapiens]
Length = 647
Score = 30.0 bits (66), Expect = 3.1
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 104 QRQLALEEQHERESSGDEETLALLKRQGLLQQPE-----QAPFTSRMGLLLVFPLIQSQS 158
+R+LALE ++RE++ + LLK PE +P L+ FPL Q++
Sbjct: 399 RRELALECDYQREAACARKFRDLLKGHPFFYVPEIVDELCSPHVLTTELVSGFPLDQAEG 458
Query: 159 RTDPSLCNITAEVLLNCLRD 178
+ I +L+ CLR+
Sbjct: 459 LSQEIRNEICYNILVLCLRE 478
>gi|52317190 olfactory receptor, family 2, subfamily AK, member 2
[Homo sapiens]
Length = 335
Score = 30.0 bits (66), Expect = 3.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 212 HIPHKQKENAAAALVALACARGSLKTFVHTVHLLQ 246
H P + +VA A A GS+ F+HT+++ Q
Sbjct: 146 HYPMLMSKKICCLMVACAWASGSINAFIHTLYVFQ 180
>gi|196115290 glial fibrillary acidic protein isoform 2 [Homo
sapiens]
Length = 431
Score = 29.6 bits (65), Expect = 4.0
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 72 AERLRSVCGNQSNAYARLLEYR---LNALRGLWNA-QRQLA-LEEQHERESSGDEETLAL 126
AE LR +++N Y R L+ L +LRG + +RQ+ EE+H RE++ +E LA
Sbjct: 272 AELLRQA-KHEANDYRRQLQSLTCDLESLRGTNESLERQMREQEERHVREAASYQEALAR 330
Query: 127 LKRQGLLQQPEQA 139
L+ +G + E A
Sbjct: 331 LEEEGQSLKDEMA 343
>gi|4503979 glial fibrillary acidic protein isoform 1 [Homo sapiens]
Length = 432
Score = 29.6 bits (65), Expect = 4.0
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 72 AERLRSVCGNQSNAYARLLEYR---LNALRGLWNA-QRQLA-LEEQHERESSGDEETLAL 126
AE LR +++N Y R L+ L +LRG + +RQ+ EE+H RE++ +E LA
Sbjct: 272 AELLRQA-KHEANDYRRQLQSLTCDLESLRGTNESLERQMREQEERHVREAASYQEALAR 330
Query: 127 LKRQGLLQQPEQA 139
L+ +G + E A
Sbjct: 331 LEEEGQSLKDEMA 343
>gi|40254434 phosphodiesterase 3B [Homo sapiens]
Length = 1112
Score = 29.3 bits (64), Expect = 5.3
Identities = 29/97 (29%), Positives = 33/97 (34%), Gaps = 16/97 (16%)
Query: 177 RDCQPLSLTKEPADCLNG--IETLLCSWLEETSDTGRHIPHKQKENAAAALVALACARGS 234
R C L PA C G + SW D G PH E AA L+ + G
Sbjct: 147 RSCGSWWLLALPACCYLGDFLVWQWWSWPWGDGDAGSAAPHTPPEAAAGRLLLVLSCVGL 206
Query: 235 LKTFVHTVHLLQ--------------KQTDLGSLPVA 257
L T H + L T LGSLP A
Sbjct: 207 LLTLAHPLRLRHCVLVLLLASFVWWVSFTSLGSLPSA 243
>gi|239754162 PREDICTED: hypothetical protein [Homo sapiens]
Length = 149
Score = 29.3 bits (64), Expect = 5.3
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 6 AAAAAAAAAADSAQWLSVKEE 26
AAAAAAAAAADS +W + +E
Sbjct: 43 AAAAAAAAAADSRRWPGLPKE 63
>gi|239748672 PREDICTED: hypothetical protein XP_002346774 [Homo
sapiens]
Length = 149
Score = 29.3 bits (64), Expect = 5.3
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 6 AAAAAAAAAADSAQWLSVKEE 26
AAAAAAAAAADS +W + +E
Sbjct: 43 AAAAAAAAAADSRRWPGLPKE 63
>gi|239742697 PREDICTED: hypothetical protein XP_002342608 [Homo
sapiens]
Length = 149
Score = 29.3 bits (64), Expect = 5.3
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 6 AAAAAAAAAADSAQWLSVKEE 26
AAAAAAAAAADS +W + +E
Sbjct: 43 AAAAAAAAAADSRRWPGLPKE 63
>gi|166235184 KIAA1274 [Homo sapiens]
Length = 856
Score = 28.9 bits (63), Expect = 6.9
Identities = 19/49 (38%), Positives = 24/49 (48%)
Query: 123 TLALLKRQGLLQQPEQAPFTSRMGLLLVFPLIQSQSRTDPSLCNITAEV 171
TL LL R G QPE AP ++ + F +IQS R P + EV
Sbjct: 327 TLILLHRSGTTSQPEAAPTQAKPLPMEQFQVIQSFLRMVPQGRRMVEEV 375
>gi|221316695 multimerin 2 precursor [Homo sapiens]
Length = 949
Score = 28.9 bits (63), Expect = 6.9
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 44 PSEILGAPEAADTDLEILTFETKNPSELAERLRSVCGNQSNAYARLLEYRLNAL-RGLWN 102
PS G EAA T L L E ++ S + + C ++ A A L L+ L L+
Sbjct: 680 PSHDAGREEAATTALAGLARELQSLSNDVKNVGRCCEAEAGAGAASLNASLHGLHNALFA 739
Query: 103 AQRQLALEEQHER 115
QR L EQH+R
Sbjct: 740 TQRSL---EQHQR 749
>gi|51896031 hypothetical protein LOC285636 [Homo sapiens]
Length = 294
Score = 28.5 bits (62), Expect = 9.0
Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 26/144 (18%)
Query: 36 RVTDLAELP-SEILGAPEAADTDLEILTFETKNPSELAERLRSVCGNQSNAY--ARLLEY 92
RV +L +L + I EAA D L S E+L+ +CG + + LLE
Sbjct: 11 RVEELGDLAQAHIQQLSEAAGEDDHFLI----RASAALEKLKLLCGEEKECSNPSNLLEL 66
Query: 93 RLNALRGLWNAQRQLALEEQHERESSGDEETLALLKRQGLLQQPEQAPFTSRMGLLLVFP 152
A+ + + ++E +SS + + L +PE
Sbjct: 67 YTQAILDMTYFEENKLVDEDFPEDSSSQKVKELI----SFLSEPE--------------- 107
Query: 153 LIQSQSRTDPSLCNITAEVLLNCL 176
++ ++ P CN+ + LL CL
Sbjct: 108 ILVKENNMHPKHCNLLGDELLECL 131
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,322,355
Number of Sequences: 37866
Number of extensions: 585176
Number of successful extensions: 2749
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2727
Number of HSP's gapped (non-prelim): 26
length of query: 340
length of database: 18,247,518
effective HSP length: 103
effective length of query: 237
effective length of database: 14,347,320
effective search space: 3400314840
effective search space used: 3400314840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.