Search of human proteins with 239755404

Search of human proteins with 239755404

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239755404 PREDICTED: hypothetical protein XP_002344554 [Homo
sapiens]
         (171 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755404 PREDICTED: hypothetical protein XP_002344554 [Homo ...   365   e-101
gi|239749908 PREDICTED: hypothetical protein XP_002347201 [Homo ...   365   e-101
gi|239744209 PREDICTED: hypothetical protein XP_002343056 [Homo ...   365   e-101
gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo sa...    38   0.004
gi|208022661 hypothetical protein LOC57701 [Homo sapiens]              34   0.054
gi|134244285 Notch homolog 3 [Homo sapiens]                            33   0.12 
gi|40288203 hypothetical protein LOC219287 isoform 1 [Homo sapiens]    31   0.46 
gi|239756545 PREDICTED: hypothetical protein XP_002344931 [Homo ...    30   0.78 
gi|239751065 PREDICTED: hypothetical protein XP_002347692 [Homo ...    30   0.78 
gi|239745511 PREDICTED: hypothetical protein XP_002343508 [Homo ...    30   0.78 
gi|28557802 sterile alpha motif domain containing 14 [Homo sapiens]    30   0.78 
gi|169160607 PREDICTED: hypothetical protein LOC100128071 [Homo ...    30   1.0  
gi|169161545 PREDICTED: hypothetical protein LOC100128071 [Homo ...    30   1.0  
gi|169161248 PREDICTED: hypothetical protein LOC100128071 [Homo ...    30   1.0  
gi|222537747 hypothetical protein LOC342979 [Homo sapiens]             30   1.3  
gi|28559065 DNA cytosine-5 methyltransferase 3 beta isoform 6 [H...    30   1.3  
gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]            30   1.3  
gi|13129104 coiled-coil domain containing 86 [Homo sapiens]            30   1.3  
gi|22749325 zinc finger protein 48 [Homo sapiens]                      29   1.7  
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ...    28   3.0  
gi|239754466 PREDICTED: hypothetical protein LOC401287 [Homo sap...    28   3.0  
gi|239749021 PREDICTED: hypothetical protein LOC401287 [Homo sap...    28   3.0  
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ...    28   3.0  
gi|239743040 PREDICTED: hypothetical protein LOC401287 [Homo sap...    28   3.0  
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]            28   3.0  
gi|148613856 DEAD box polypeptide 17 isoform 3 [Homo sapiens]          28   3.0  
gi|38201710 DEAD box polypeptide 17 isoform 1 [Homo sapiens]           28   3.0  
gi|120587029 signal peptide, CUB domain, EGF-like 1 [Homo sapiens]     28   3.0  
gi|239754329 PREDICTED: hypothetical protein XP_002345954 [Homo ...    28   3.9  
gi|239748853 PREDICTED: hypothetical protein XP_002346819 [Homo ...    28   3.9  

>gi|239755404 PREDICTED: hypothetical protein XP_002344554 [Homo
           sapiens]
          Length = 171

 Score =  365 bits (936), Expect = e-101
 Identities = 171/171 (100%), Positives = 171/171 (100%)

Query: 1   MYIKENTGSGKRSFENIMSNQGYYTETGLREGSNWPRATEPGLEPRSRIFTSHALGAAAS 60
           MYIKENTGSGKRSFENIMSNQGYYTETGLREGSNWPRATEPGLEPRSRIFTSHALGAAAS
Sbjct: 1   MYIKENTGSGKRSFENIMSNQGYYTETGLREGSNWPRATEPGLEPRSRIFTSHALGAAAS 60

Query: 61  CSPEPFSGVQHKPCLRGDMSTCLCCSYSTVPVPFHRCLQIPTPAAPRLSSRAGDPRAVTG 120
           CSPEPFSGVQHKPCLRGDMSTCLCCSYSTVPVPFHRCLQIPTPAAPRLSSRAGDPRAVTG
Sbjct: 61  CSPEPFSGVQHKPCLRGDMSTCLCCSYSTVPVPFHRCLQIPTPAAPRLSSRAGDPRAVTG 120

Query: 121 DECPRGADELSKPPPSVKTYEDAHSTGRRAGEVADAVGHPASAPEARCFTW 171
           DECPRGADELSKPPPSVKTYEDAHSTGRRAGEVADAVGHPASAPEARCFTW
Sbjct: 121 DECPRGADELSKPPPSVKTYEDAHSTGRRAGEVADAVGHPASAPEARCFTW 171


>gi|239749908 PREDICTED: hypothetical protein XP_002347201 [Homo
           sapiens]
          Length = 171

 Score =  365 bits (936), Expect = e-101
 Identities = 171/171 (100%), Positives = 171/171 (100%)

Query: 1   MYIKENTGSGKRSFENIMSNQGYYTETGLREGSNWPRATEPGLEPRSRIFTSHALGAAAS 60
           MYIKENTGSGKRSFENIMSNQGYYTETGLREGSNWPRATEPGLEPRSRIFTSHALGAAAS
Sbjct: 1   MYIKENTGSGKRSFENIMSNQGYYTETGLREGSNWPRATEPGLEPRSRIFTSHALGAAAS 60

Query: 61  CSPEPFSGVQHKPCLRGDMSTCLCCSYSTVPVPFHRCLQIPTPAAPRLSSRAGDPRAVTG 120
           CSPEPFSGVQHKPCLRGDMSTCLCCSYSTVPVPFHRCLQIPTPAAPRLSSRAGDPRAVTG
Sbjct: 61  CSPEPFSGVQHKPCLRGDMSTCLCCSYSTVPVPFHRCLQIPTPAAPRLSSRAGDPRAVTG 120

Query: 121 DECPRGADELSKPPPSVKTYEDAHSTGRRAGEVADAVGHPASAPEARCFTW 171
           DECPRGADELSKPPPSVKTYEDAHSTGRRAGEVADAVGHPASAPEARCFTW
Sbjct: 121 DECPRGADELSKPPPSVKTYEDAHSTGRRAGEVADAVGHPASAPEARCFTW 171


>gi|239744209 PREDICTED: hypothetical protein XP_002343056 [Homo
           sapiens]
          Length = 171

 Score =  365 bits (936), Expect = e-101
 Identities = 171/171 (100%), Positives = 171/171 (100%)

Query: 1   MYIKENTGSGKRSFENIMSNQGYYTETGLREGSNWPRATEPGLEPRSRIFTSHALGAAAS 60
           MYIKENTGSGKRSFENIMSNQGYYTETGLREGSNWPRATEPGLEPRSRIFTSHALGAAAS
Sbjct: 1   MYIKENTGSGKRSFENIMSNQGYYTETGLREGSNWPRATEPGLEPRSRIFTSHALGAAAS 60

Query: 61  CSPEPFSGVQHKPCLRGDMSTCLCCSYSTVPVPFHRCLQIPTPAAPRLSSRAGDPRAVTG 120
           CSPEPFSGVQHKPCLRGDMSTCLCCSYSTVPVPFHRCLQIPTPAAPRLSSRAGDPRAVTG
Sbjct: 61  CSPEPFSGVQHKPCLRGDMSTCLCCSYSTVPVPFHRCLQIPTPAAPRLSSRAGDPRAVTG 120

Query: 121 DECPRGADELSKPPPSVKTYEDAHSTGRRAGEVADAVGHPASAPEARCFTW 171
           DECPRGADELSKPPPSVKTYEDAHSTGRRAGEVADAVGHPASAPEARCFTW
Sbjct: 121 DECPRGADELSKPPPSVKTYEDAHSTGRRAGEVADAVGHPASAPEARCFTW 171


>gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo
           sapiens]
          Length = 402

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 29/82 (35%), Positives = 33/82 (40%), Gaps = 9/82 (10%)

Query: 91  PVPFHRCLQIPTPAAPRLSSRAGDPRAVTGDECP--RGADELSKPP-------PSVKTYE 141
           PVP       P PA+P    RA  P    G+  P  RGADEL  PP         V    
Sbjct: 41  PVPAAPRYLPPLPASPETPERAAGPSEPLGEVAPRCRGADELPPPPLPLQPAGQEVAAAG 100

Query: 142 DAHSTGRRAGEVADAVGHPASA 163
           D+    RR  E A A G P  +
Sbjct: 101 DSGEGPRRLPEAAAAKGGPGES 122


>gi|208022661 hypothetical protein LOC57701 [Homo sapiens]
          Length = 1334

 Score = 34.3 bits (77), Expect = 0.054
 Identities = 34/152 (22%), Positives = 61/152 (40%), Gaps = 26/152 (17%)

Query: 32  GSNWPRATEPGL--EPRSRIFTSHALGAAASCSP-EPFSGVQHKPCLRGDMSTCLCCSYS 88
           G+N  +  EPGL  +P +R+++SH++GA     P  P S +      +  ++  LC    
Sbjct: 732 GTNSLKQQEPGLMGDPGARVYSSHSMGARVDLEPVSPRSCLTKVELAKSRLAGALCPQVP 791

Query: 89  TVPV---------------PFHRCLQIPTPAAPRLSSRAGDPRAVTGDECPRGADELSKP 133
             P                P     ++P+ +  ++  R G P  +   E P+   +  K 
Sbjct: 792 RTPAKVPTSAPSLGKPNKSPHSSPTKLPSKSPTKVVPRPGAP--LVTKESPK--PDKGKG 847

Query: 134 PPSVKTYEDAHSTGRRAGEVADAVGHPASAPE 165
           PP    + D  ST  ++  +      P+  PE
Sbjct: 848 PP----WADCGSTTAQSTPLVPGPTDPSQGPE 875


>gi|134244285 Notch homolog 3 [Homo sapiens]
          Length = 2321

 Score = 33.1 bits (74), Expect = 0.12
 Identities = 37/132 (28%), Positives = 48/132 (36%), Gaps = 18/132 (13%)

Query: 38   ATEPGLE-PRSRIFTSHALGAA-ASCSPEPFSGVQHKPCLRGDMSTCLCCSYSTVPV-PF 94
            A  PGL  P  R F     GA+ ASC+  P        CL G        S    P+ PF
Sbjct: 1314 ACPPGLSGPSCRSFPGSPPGASNASCAAAP--------CLHGG-------SCRPAPLAPF 1358

Query: 95   HRCLQIPTPAAPRLSSRAGDPRAVTGDECPRGADELSKPPPSVKTYEDAHSTGRRAGEVA 154
             RC        PR  + A  P       CPR A +  +         ++   G   G+ +
Sbjct: 1359 FRCACAQGWTGPRCEAPAAAPEVSEEPRCPRAACQAKRGDQRCDRECNSPGCGWDGGDCS 1418

Query: 155  DAVGHPASAPEA 166
             +VG P    EA
Sbjct: 1419 LSVGDPWRQCEA 1430


>gi|40288203 hypothetical protein LOC219287 isoform 1 [Homo sapiens]
          Length = 671

 Score = 31.2 bits (69), Expect = 0.46
 Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 10/78 (12%)

Query: 99  QIPTPA--APRLSSRAGDPRAVTGDECPRGAD-----ELSKPPPSVKTYEDAHSTGR--- 148
           ++P PA  AP  S R  +  A  GD   RG D          P  V+T EDA  TG    
Sbjct: 268 EVPAPADRAPARSCREAEGLAHPGDTGARGEDAAGHRRAEPGPGEVRTAEDASRTGAVPV 327

Query: 149 RAGEVADAVGHPASAPEA 166
           +   + D+ G    AP A
Sbjct: 328 KTVPLVDSEGGSGRAPAA 345


>gi|239756545 PREDICTED: hypothetical protein XP_002344931 [Homo
           sapiens]
          Length = 427

 Score = 30.4 bits (67), Expect = 0.78
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 30  REGSNWPRATEPGLEPRSRIFTSHALGAAASCSPEP 65
           R G+ W R+  P   P SR  +SH+L +   CSP P
Sbjct: 344 RPGTRWFRSFLP--RPHSRPLSSHSLPSPKGCSPPP 377


>gi|239751065 PREDICTED: hypothetical protein XP_002347692 [Homo
           sapiens]
          Length = 537

 Score = 30.4 bits (67), Expect = 0.78
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 30  REGSNWPRATEPGLEPRSRIFTSHALGAAASCSPEP 65
           R G+ W R+  P   P SR  +SH+L +   CSP P
Sbjct: 454 RPGTRWFRSFLP--RPHSRPLSSHSLPSPKGCSPPP 487


>gi|239745511 PREDICTED: hypothetical protein XP_002343508 [Homo
           sapiens]
          Length = 427

 Score = 30.4 bits (67), Expect = 0.78
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 30  REGSNWPRATEPGLEPRSRIFTSHALGAAASCSPEP 65
           R G+ W R+  P   P SR  +SH+L +   CSP P
Sbjct: 344 RPGTRWFRSFLP--RPHSRPLSSHSLPSPKGCSPPP 377


>gi|28557802 sterile alpha motif domain containing 14 [Homo sapiens]
          Length = 445

 Score = 30.4 bits (67), Expect = 0.78
 Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 3/74 (4%)

Query: 93  PFHRCLQIPTPAAPRLSSRAGDPRAVTGDECPRGADELSKPPPSVKTYEDAHSTGRRAGE 152
           P HR L+ P  + P   S AG    +      R  DE   PP  +  Y   H+     G 
Sbjct: 78  PLHR-LRSPLHSGP--GSPAGGSFCLDPPGLRRSLDEDEPPPSPLTRYRPLHNAASHEGL 134

Query: 153 VADAVGHPASAPEA 166
            A +   P SAP +
Sbjct: 135 AAASCSPPRSAPSS 148


>gi|169160607 PREDICTED: hypothetical protein LOC100128071 [Homo
           sapiens]
          Length = 127

 Score = 30.0 bits (66), Expect = 1.0
 Identities = 28/88 (31%), Positives = 35/88 (39%), Gaps = 19/88 (21%)

Query: 88  STVPVPFHRCLQIPTPAAPRLSSRAGDPRAV-------TGDECPRGADELSKPPPSVKTY 140
           S+ P P H     P P  P  S  A  P A        T    PRG D  ++ PP     
Sbjct: 4   SSTPGPGHATETCPAPPGPERSPAARAPAAASSLGPVSTAGRAPRGLDMSAQEPPQ---- 59

Query: 141 EDAHSTGRRAG-EVADAVGHPASAPEAR 167
                 GRR   E  D+ G  A+APE++
Sbjct: 60  ------GRRFPIEAGDSRG-LAAAPESQ 80


>gi|169161545 PREDICTED: hypothetical protein LOC100128071 [Homo
           sapiens]
          Length = 127

 Score = 30.0 bits (66), Expect = 1.0
 Identities = 28/88 (31%), Positives = 35/88 (39%), Gaps = 19/88 (21%)

Query: 88  STVPVPFHRCLQIPTPAAPRLSSRAGDPRAV-------TGDECPRGADELSKPPPSVKTY 140
           S+ P P H     P P  P  S  A  P A        T    PRG D  ++ PP     
Sbjct: 4   SSTPGPGHATETCPAPPGPERSPAARAPAAASSLGPVSTAGRAPRGLDMSAQEPPQ---- 59

Query: 141 EDAHSTGRRAG-EVADAVGHPASAPEAR 167
                 GRR   E  D+ G  A+APE++
Sbjct: 60  ------GRRFPIEAGDSRG-LAAAPESQ 80


>gi|169161248 PREDICTED: hypothetical protein LOC100128071 [Homo
           sapiens]
          Length = 127

 Score = 30.0 bits (66), Expect = 1.0
 Identities = 28/88 (31%), Positives = 35/88 (39%), Gaps = 19/88 (21%)

Query: 88  STVPVPFHRCLQIPTPAAPRLSSRAGDPRAV-------TGDECPRGADELSKPPPSVKTY 140
           S+ P P H     P P  P  S  A  P A        T    PRG D  ++ PP     
Sbjct: 4   SSTPGPGHATETCPAPPGPERSPAARAPAAASSLGPVSTAGRAPRGLDMSAQEPPQ---- 59

Query: 141 EDAHSTGRRAG-EVADAVGHPASAPEAR 167
                 GRR   E  D+ G  A+APE++
Sbjct: 60  ------GRRFPIEAGDSRG-LAAAPESQ 80


>gi|222537747 hypothetical protein LOC342979 [Homo sapiens]
          Length = 673

 Score = 29.6 bits (65), Expect = 1.3
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 6/87 (6%)

Query: 40  EPGLEPRSRIFTSHALGAAASC---SPEPFSGVQHKPCLRGDMSTCLCCSYSTVPVPFHR 96
           E G++P++       LG A      +P P    + +P L+G+  +    + S  PVP + 
Sbjct: 587 EEGVKPQTAAEGQGPLGDATPLLAETPAPEQPAECQPLLQGEGPSA---NPSAHPVPTYA 643

Query: 97  CLQIPTPAAPRLSSRAGDPRAVTGDEC 123
             + P P+AP     A  P+  T   C
Sbjct: 644 PARQPEPSAPTEGEEASGPKQKTCQCC 670


>gi|28559065 DNA cytosine-5 methyltransferase 3 beta isoform 6 [Homo
           sapiens]
          Length = 845

 Score = 29.6 bits (65), Expect = 1.3
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 11/61 (18%)

Query: 101 PTPAAPRLSSRAGDPRAVTGDECPRG-----------ADELSKPPPSVKTYEDAHSTGRR 149
           P+P  P L S  GD R + G+E   G           +D+ S  PP ++        GRR
Sbjct: 3   PSPEPPSLESMKGDTRHLNGEEDAGGREDSILVNGACSDQSSDSPPILEAIRTPEIRGRR 62

Query: 150 A 150
           +
Sbjct: 63  S 63


>gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 350

 Score = 29.6 bits (65), Expect = 1.3
 Identities = 21/63 (33%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 97  CLQIPTPAAPRLSSRAGDPRAVTGDECPRGADELSKPPPSVKTYE-DAHSTGRRAGEVAD 155
           C   P PA  R    AG PR       PR  D   + P   +T      S GRR G+ A 
Sbjct: 167 CRSSPFPARSRTPGEAGPPRGDPRPRAPRPGDHPRRSPALRETPSLSPPSPGRRNGKRAA 226

Query: 156 AVG 158
             G
Sbjct: 227 GKG 229


>gi|13129104 coiled-coil domain containing 86 [Homo sapiens]
          Length = 360

 Score = 29.6 bits (65), Expect = 1.3
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 9/62 (14%)

Query: 101 PTPAAPRLSSRAGDPRAVTGDECPRGADELSKPPPSVKTYEDAHSTGRRAGEVADAVGHP 160
           P P+ P L      P +      PRG  E SKPPP+ +T        +R G  + A   P
Sbjct: 172 PEPSQPLLELTPRAPGS------PRGQHEPSKPPPAGETVTGGFGAKKRKGSSSQA---P 222

Query: 161 AS 162
           AS
Sbjct: 223 AS 224


>gi|22749325 zinc finger protein 48 [Homo sapiens]
          Length = 618

 Score = 29.3 bits (64), Expect = 1.7
 Identities = 15/46 (32%), Positives = 21/46 (45%)

Query: 90  VPVPFHRCLQIPTPAAPRLSSRAGDPRAVTGDECPRGADELSKPPP 135
           +P P    L    P  PR  S +G+P  + G E   G  +  +PPP
Sbjct: 398 IPSPPPPPLGTSPPLTPRSPSHSGEPFGLPGLEPEPGGPQAGEPPP 443


>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
           sapiens]
          Length = 384

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 16/87 (18%)

Query: 101 PTPAAPRLSSRAGDPRAVTGDECP----RGADELSKPP------PSVKTYEDAHSTGRRA 150
           P PAAP+ ++R    RA +G   P    +G+D++   P      P   T     +  RR+
Sbjct: 137 PAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRS 196

Query: 151 GEVADAVG-----HPASAPEAR-CFTW 171
                  G      P S   AR C TW
Sbjct: 197 ARPFRRPGLPLKSRPGSGTGARSCGTW 223


>gi|239754466 PREDICTED: hypothetical protein LOC401287 [Homo
           sapiens]
          Length = 573

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 30/108 (27%), Positives = 39/108 (36%), Gaps = 21/108 (19%)

Query: 62  SPEPFSGVQHKPCLRGDMSTCLCCSYSTVPVPFHRCLQIPTPAAPRLSSRAGDPRAVTGD 121
           SP P    Q  PC R            T P P+ R   +P P  P L      P    G 
Sbjct: 4   SPGPHHRSQTSPCAR---------PLPTFPAPWSRL--VPGPCPPSL-----HPGPAVGF 47

Query: 122 ECPRGADELSKPPPSVKTYE----DAHSTGRRAGEVADAVGHPASAPE 165
           + P   D L + PP++         +H+T  R  E    VGH    P+
Sbjct: 48  QSPLTQDWLPRSPPTLPLTWVLRCPSHATLNRLSE-DKPVGHDFPLPQ 94


>gi|239749021 PREDICTED: hypothetical protein LOC401287 [Homo
           sapiens]
          Length = 573

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 30/108 (27%), Positives = 39/108 (36%), Gaps = 21/108 (19%)

Query: 62  SPEPFSGVQHKPCLRGDMSTCLCCSYSTVPVPFHRCLQIPTPAAPRLSSRAGDPRAVTGD 121
           SP P    Q  PC R            T P P+ R   +P P  P L      P    G 
Sbjct: 4   SPGPHHRSQTSPCAR---------PLPTFPAPWSRL--VPGPCPPSL-----HPGPAVGF 47

Query: 122 ECPRGADELSKPPPSVKTYE----DAHSTGRRAGEVADAVGHPASAPE 165
           + P   D L + PP++         +H+T  R  E    VGH    P+
Sbjct: 48  QSPLTQDWLPRSPPTLPLTWVLRCPSHATLNRLSE-DKPVGHDFPLPQ 94


>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
           sapiens]
          Length = 384

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 16/87 (18%)

Query: 101 PTPAAPRLSSRAGDPRAVTGDECP----RGADELSKPP------PSVKTYEDAHSTGRRA 150
           P PAAP+ ++R    RA +G   P    +G+D++   P      P   T     +  RR+
Sbjct: 137 PAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRS 196

Query: 151 GEVADAVG-----HPASAPEAR-CFTW 171
                  G      P S   AR C TW
Sbjct: 197 ARPFRRPGLPLKSRPGSGTGARSCGTW 223


>gi|239743040 PREDICTED: hypothetical protein LOC401287 [Homo
           sapiens]
          Length = 573

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 30/108 (27%), Positives = 39/108 (36%), Gaps = 21/108 (19%)

Query: 62  SPEPFSGVQHKPCLRGDMSTCLCCSYSTVPVPFHRCLQIPTPAAPRLSSRAGDPRAVTGD 121
           SP P    Q  PC R            T P P+ R   +P P  P L      P    G 
Sbjct: 4   SPGPHHRSQTSPCAR---------PLPTFPAPWSRL--VPGPCPPSL-----HPGPAVGF 47

Query: 122 ECPRGADELSKPPPSVKTYE----DAHSTGRRAGEVADAVGHPASAPE 165
           + P   D L + PP++         +H+T  R  E    VGH    P+
Sbjct: 48  QSPLTQDWLPRSPPTLPLTWVLRCPSHATLNRLSE-DKPVGHDFPLPQ 94


>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 384

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 16/87 (18%)

Query: 101 PTPAAPRLSSRAGDPRAVTGDECP----RGADELSKPP------PSVKTYEDAHSTGRRA 150
           P PAAP+ ++R    RA +G   P    +G+D++   P      P   T     +  RR+
Sbjct: 137 PAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRS 196

Query: 151 GEVADAVG-----HPASAPEAR-CFTW 171
                  G      P S   AR C TW
Sbjct: 197 ARPFRRPGLPLKSRPGSGTGARSCGTW 223


>gi|148613856 DEAD box polypeptide 17 isoform 3 [Homo sapiens]
          Length = 731

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 97  CLQIPTPA--APRLSSRAGDPRAVTGDECPRGADELSKPPPSVKT 139
           C+ +P+P   A  ++S  GD  +      P  A     PPPSV T
Sbjct: 11  CVLLPSPTREAATVASATGDSASERESAAPAAAPTAEAPPPSVVT 55


>gi|38201710 DEAD box polypeptide 17 isoform 1 [Homo sapiens]
          Length = 729

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 97  CLQIPTPA--APRLSSRAGDPRAVTGDECPRGADELSKPPPSVKT 139
           C+ +P+P   A  ++S  GD  +      P  A     PPPSV T
Sbjct: 11  CVLLPSPTREAATVASATGDSASERESAAPAAAPTAEAPPPSVVT 55


>gi|120587029 signal peptide, CUB domain, EGF-like 1 [Homo sapiens]
          Length = 988

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 92  VPFHRCLQIPTPAAPRLSSRAGDPRAVTGDECPRGADE 129
           V +H C+ +      RL+  +G P +V  DEC  G D+
Sbjct: 6   VRWHLCVLLALGTRGRLAGGSGLPGSVDVDECSEGTDD 43


>gi|239754329 PREDICTED: hypothetical protein XP_002345954 [Homo
           sapiens]
          Length = 156

 Score = 28.1 bits (61), Expect = 3.9
 Identities = 32/111 (28%), Positives = 41/111 (36%), Gaps = 17/111 (15%)

Query: 27  TGLREGSNWPRATEPGLEPRSRIFTSHALGAAASCSPEPFSGVQHKPCLRG-DMSTCLCC 85
           T  R   ++PR +   L PR      H LG+ A C     SG     CL G  +      
Sbjct: 10  TAARSHLSFPRTSTSHLPPRQVTSPEHRLGSQALCPAA--SGA----CLWGVGVVATTSR 63

Query: 86  SYSTVPVP---------FHRCL-QIPTPAAPRLSSRAGDPRAVTGDECPRG 126
                P+P          H C  ++ T +APR  SRAG      G    RG
Sbjct: 64  EERIAPLPPGRHPNRASLHPCSGEVFTKSAPRRRSRAGQEVGKRGRRRQRG 114


>gi|239748853 PREDICTED: hypothetical protein XP_002346819 [Homo
           sapiens]
          Length = 156

 Score = 28.1 bits (61), Expect = 3.9
 Identities = 32/111 (28%), Positives = 41/111 (36%), Gaps = 17/111 (15%)

Query: 27  TGLREGSNWPRATEPGLEPRSRIFTSHALGAAASCSPEPFSGVQHKPCLRG-DMSTCLCC 85
           T  R   ++PR +   L PR      H LG+ A C     SG     CL G  +      
Sbjct: 10  TAARSHLSFPRTSTSHLPPRQVTSPEHRLGSQALCPAA--SGA----CLWGVGVVATTSR 63

Query: 86  SYSTVPVP---------FHRCL-QIPTPAAPRLSSRAGDPRAVTGDECPRG 126
                P+P          H C  ++ T +APR  SRAG      G    RG
Sbjct: 64  EERIAPLPPGRHPNRASLHPCSGEVFTKSAPRRRSRAGQEVGKRGRRRQRG 114


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.131    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,749,026
Number of Sequences: 37866
Number of extensions: 489567
Number of successful extensions: 1520
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 1483
Number of HSP's gapped (non-prelim): 82
length of query: 171
length of database: 18,247,518
effective HSP length: 95
effective length of query: 76
effective length of database: 14,650,248
effective search space: 1113418848
effective search space used: 1113418848
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.