Guide to the Human Genome
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Name: LOC100287068 Sequence: fasta or formatted (171aa) NCBI GI: 239744209
Description:

PREDICTED: hypothetical protein XP_002343056

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         17           3
 C cysteine            4.7          8           2
 D aspartate           3.5          6           1
 E glutamate           7.0         12           1
 F phenylalanine       2.9          5           1
 G glycine             8.8         15           1
 H histidine           2.9          5           1
 I isoleucine          2.3          4           1
 K lysine              2.9          5           1
 L leucine             4.7          8           1
 M methionine          1.8          3           1
 N asparagine          2.3          4           1
 P proline            10.5         18           3
 Q glutamine           1.8          3           1
 R arginine            8.2         14           2
 S serine             10.5         18           2
 T threonine           7.0         12           1
 V valine              4.1          7           1
 W tryptophan          1.2          2           1
 Y tyrosine            2.9          5           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343056 
LOC100292072          1.000   PREDICTED: hypothetical protein XP_002344554 
LOC100290836          1.000   PREDICTED: hypothetical protein XP_002347201 
MARCH11               0.038   membrane-associated ring finger (C3HC4) 11 
KIAA1602              0.026   hypothetical protein LOC57701 
NOTCH3                0.024   Notch homolog 3 
FAM123A               0.018   hypothetical protein LOC219287 isoform 1 
LOC100291743          0.015   PREDICTED: hypothetical protein XP_002344931 
LOC100289969          0.015   PREDICTED: hypothetical protein XP_002347692 
LOC100288859          0.015   PREDICTED: hypothetical protein XP_002343508 
SAMD14                0.015   sterile alpha motif domain containing 14 
LOC100128071          0.015   PREDICTED: hypothetical protein LOC100128071 
LOC100128071          0.015   PREDICTED: hypothetical protein LOC100128071 
LOC100128071          0.015   PREDICTED: hypothetical protein LOC100128071 
PALM3                 0.015   hypothetical protein LOC342979 
DNMT3B                0.015   DNA cytosine-5 methyltransferase 3 beta isoform 6 [H...
LOC100130360          0.015   PREDICTED: hypothetical protein 
CCDC86                0.015   coiled-coil domain containing 86 
ZNF48                 0.012   zinc finger protein 48 
LOC100291634          0.009   PREDICTED: hypothetical protein XP_002346062 
DKFZp686L13185        0.009   PREDICTED: hypothetical protein LOC401287 
DKFZp686L13185        0.009   PREDICTED: hypothetical protein LOC401287 
LOC100287232          0.009   PREDICTED: hypothetical protein XP_002342816 
DKFZp686L13185        0.009   PREDICTED: hypothetical protein LOC401287 
LOC100287232          0.009   PREDICTED: hypothetical protein 
DDX17                 0.009   DEAD box polypeptide 17 isoform 3 
DDX17                 0.009   DEAD box polypeptide 17 isoform 1 
SCUBE1                0.009   signal peptide, CUB domain, EGF-like 1 
LOC100291555          0.009   PREDICTED: hypothetical protein XP_002345954 
LOC100291318          0.009   PREDICTED: hypothetical protein XP_002346819 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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