Search of human proteins with 239754959

Search of human proteins with 239754959

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239754959 PREDICTED: similar to Protein MOST-1 [Homo
sapiens]
         (99 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754959 PREDICTED: similar to Protein MOST-1 [Homo sapiens]      220   2e-58
gi|9624988 hypothetical protein LOC56260 [Homo sapiens]                61   2e-10
gi|239747192 PREDICTED: similar to hCG2038988 [Homo sapiens]           46   7e-06
gi|224451053 homeobox C14 [Homo sapiens]                               41   2e-04
gi|239747698 PREDICTED: similar to hCG1784039 [Homo sapiens]           40   5e-04
gi|18543327 tectonic family member 1 isoform 3 [Homo sapiens]          37   0.003
gi|197304733 cytochrome b-561 domain containing 1 isoform 5 [Hom...    35   0.010
gi|197304731 cytochrome b-561 domain containing 1 isoform 4 [Hom...    35   0.010
gi|197304721 cytochrome b-561 domain containing 1 isoform 1 [Hom...    35   0.017
gi|239745342 PREDICTED: hypothetical protein XP_002343430 [Homo ...    31   0.19 
gi|118600985 zinc finger protein 91 [Homo sapiens]                     31   0.19 
gi|239751420 PREDICTED: similar to hCG2039376 [Homo sapiens]           31   0.24 
gi|194272183 G protein-coupled receptor 124 [Homo sapiens]             30   0.54 
gi|89886350 Rho GTPase activating protein 11B [Homo sapiens]           27   2.7  
gi|4507369 tyrosine aminotransferase [Homo sapiens]                    27   3.5  
gi|18765711 four jointed box 1 [Homo sapiens]                          27   4.6  

>gi|239754959 PREDICTED: similar to Protein MOST-1 [Homo sapiens]
          Length = 99

 Score =  220 bits (561), Expect = 2e-58
 Identities = 99/99 (100%), Positives = 99/99 (100%)

Query: 1  MGECPHLVDVRLGHRSLATGPEQSDICHTGSEARWTTTWYGSLSFSRHKYKMLADLTPGV 60
          MGECPHLVDVRLGHRSLATGPEQSDICHTGSEARWTTTWYGSLSFSRHKYKMLADLTPGV
Sbjct: 1  MGECPHLVDVRLGHRSLATGPEQSDICHTGSEARWTTTWYGSLSFSRHKYKMLADLTPGV 60

Query: 61 EMSCRHWARWLTPVIPALWKAEAGGLPELRSSRPAWTTW 99
          EMSCRHWARWLTPVIPALWKAEAGGLPELRSSRPAWTTW
Sbjct: 61 EMSCRHWARWLTPVIPALWKAEAGGLPELRSSRPAWTTW 99


>gi|9624988 hypothetical protein LOC56260 [Homo sapiens]
          Length = 159

 Score = 60.8 bits (146), Expect = 2e-10
 Identities = 26/37 (70%), Positives = 30/37 (81%), Gaps = 3/37 (8%)

Query: 66 HW---ARWLTPVIPALWKAEAGGLPELRSSRPAWTTW 99
          HW   ARWL PVIPALW+A+AG  PE+RSS+PAW TW
Sbjct: 33 HWKGRARWLMPVIPALWEAKAGRSPEVRSSKPAWPTW 69


>gi|239747192 PREDICTED: similar to hCG2038988 [Homo sapiens]
          Length = 141

 Score = 45.8 bits (107), Expect = 7e-06
 Identities = 20/25 (80%), Positives = 21/25 (84%)

Query: 72  TPVIPALWKAEAGGLPELRSSRPAW 96
           TPVIPALW+AEAGG PE RS  PAW
Sbjct: 115 TPVIPALWEAEAGGSPEPRSLTPAW 139


>gi|224451053 homeobox C14 [Homo sapiens]
          Length = 188

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 17/19 (89%), Positives = 18/19 (94%)

Query: 66 HWARWLTPVIPALWKAEAG 84
          H ARWLTPVIPALW+AEAG
Sbjct: 2  HRARWLTPVIPALWEAEAG 20


>gi|239747698 PREDICTED: similar to hCG1784039 [Homo sapiens]
          Length = 161

 Score = 39.7 bits (91), Expect = 5e-04
 Identities = 17/19 (89%), Positives = 18/19 (94%)

Query: 68 ARWLTPVIPALWKAEAGGL 86
          ARWLTPVIPALW+AEA GL
Sbjct: 63 ARWLTPVIPALWEAEACGL 81


>gi|18543327 tectonic family member 1 isoform 3 [Homo sapiens]
          Length = 573

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 17/26 (65%), Positives = 19/26 (73%)

Query: 68  ARWLTPVIPALWKAEAGGLPELRSSR 93
           A W TPVIPALW+AEA G  E+  SR
Sbjct: 240 AYWFTPVIPALWEAEARGSLEVPDSR 265


>gi|197304733 cytochrome b-561 domain containing 1 isoform 5 [Homo
          sapiens]
          Length = 128

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 15/24 (62%), Positives = 19/24 (79%)

Query: 68 ARWLTPVIPALWKAEAGGLPELRS 91
          ARW+ P IPALW+A+AGG  E+ S
Sbjct: 64 ARWVMPEIPALWEADAGGSLEVFS 87


>gi|197304731 cytochrome b-561 domain containing 1 isoform 4 [Homo
          sapiens]
          Length = 133

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 15/24 (62%), Positives = 19/24 (79%)

Query: 68 ARWLTPVIPALWKAEAGGLPELRS 91
          ARW+ P IPALW+A+AGG  E+ S
Sbjct: 64 ARWVMPEIPALWEADAGGSLEVFS 87


>gi|197304721 cytochrome b-561 domain containing 1 isoform 1 [Homo
          sapiens]
          Length = 251

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 13/18 (72%), Positives = 16/18 (88%)

Query: 68 ARWLTPVIPALWKAEAGG 85
          ARW+ P IPALW+A+AGG
Sbjct: 64 ARWVMPEIPALWEADAGG 81


>gi|239745342 PREDICTED: hypothetical protein XP_002343430 [Homo
           sapiens]
          Length = 230

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 2/28 (7%)

Query: 67  WARWLTPVIPALWKAEAGGLPELRSSRP 94
           WARW TPVIP  W +     P  R  RP
Sbjct: 174 WARWRTPVIPKCWDSRRE--PPRRDPRP 199


>gi|118600985 zinc finger protein 91 [Homo sapiens]
          Length = 1191

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 12/15 (80%), Positives = 14/15 (93%)

Query: 71   LTPVIPALWKAEAGG 85
            +TPVIP LW+AEAGG
Sbjct: 1158 ITPVIPLLWEAEAGG 1172


>gi|239751420 PREDICTED: similar to hCG2039376 [Homo sapiens]
          Length = 858

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 13/14 (92%), Positives = 13/14 (92%)

Query: 71  LTPVIPALWKAEAG 84
           L PVIPALWKAEAG
Sbjct: 666 LPPVIPALWKAEAG 679


>gi|194272183 G protein-coupled receptor 124 [Homo sapiens]
          Length = 1338

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 9/50 (18%)

Query: 53  LADLTPGVEMSCRHWARWLTPVIPALWK----AEAGGLP----ELRSSRP 94
           + +LT  V +S RHWA    PV  A W      EAGG      +LRSS+P
Sbjct: 688 VGNLTEPVAVSLRHWAEGAEPV-AAWWSQEGPGEAGGWTSEGCQLRSSQP 736


>gi|89886350 Rho GTPase activating protein 11B [Homo sapiens]
          Length = 267

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 13/49 (26%), Positives = 23/49 (46%)

Query: 5   PHLVDVRLGHRSLATGPEQSDICHTGSEARWTTTWYGSLSFSRHKYKML 53
           P+L+    GH  +++  E+  +  T S  R+   W   +S   H +K L
Sbjct: 201 PNLLQTSEGHEKMSSNAEKKGVYQTLSWKRYQPCWVLMVSVLLHHWKAL 249


>gi|4507369 tyrosine aminotransferase [Homo sapiens]
          Length = 454

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 40  YGSLSFSRHKYKMLADLTPGVE-MSCRHWA-RWLTP 73
           YG + FS  KY+ LA L+  V  +SC   A RWL P
Sbjct: 250 YGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVP 285


>gi|18765711 four jointed box 1 [Homo sapiens]
          Length = 437

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 54  ADLTPGVEMSCRHWARWLTPVI-PALWKAEAGGLPELRSS 92
           A  T G  +S   W   LT V+ PA W++E G L  LR +
Sbjct: 232 AHWTEGSVVSLTRWLPNLTDVVVPAPWRSEDGRLRPLRDA 271


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.133    0.474 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,553,555
Number of Sequences: 37866
Number of extensions: 175068
Number of successful extensions: 361
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 17
length of query: 99
length of database: 18,247,518
effective HSP length: 70
effective length of query: 29
effective length of database: 15,596,898
effective search space: 452310042
effective search space used: 452310042
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.