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Search of human proteins with 239754793
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754793 PREDICTED: similar to Small ubiquitin-related
modifier 2 [Homo sapiens]
(103 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754793 PREDICTED: similar to Small ubiquitin-related modif... 209 3e-55
gi|239749320 PREDICTED: hypothetical protein XP_002346995 [Homo ... 209 3e-55
gi|239509111 PREDICTED: similar to Small ubiquitin-related modif... 209 3e-55
gi|239743410 PREDICTED: hypothetical protein XP_002342830 [Homo ... 206 3e-54
gi|54792071 SMT3 suppressor of mif two 3 homolog 2 isoform b pre... 118 1e-27
gi|54792069 SMT3 suppressor of mif two 3 homolog 2 isoform a pre... 106 3e-24
gi|169169820 PREDICTED: similar to SMT3 supressor of mif two 3 h... 105 6e-24
gi|239748082 PREDICTED: similar to SMT3 suppressor of mif two 3 ... 102 8e-23
gi|239741979 PREDICTED: hypothetical protein XP_002342366 [Homo ... 102 8e-23
gi|50400081 SMT3 suppressor of mif two 3 homolog 4 [Homo sapiens] 98 1e-21
gi|48928058 small ubiquitin-like modifier protein 3 [Homo sapiens] 98 1e-21
gi|239754164 PREDICTED: similar to mCG21560 [Homo sapiens] 84 2e-17
gi|239748701 PREDICTED: similar to mCG21560 [Homo sapiens] 84 2e-17
gi|239742728 PREDICTED: similar to mCG21560 [Homo sapiens] 84 2e-17
gi|54792065 SMT3 suppressor of mif two 3 homolog 1 isoform a pre... 50 4e-07
gi|4507801 SMT3 suppressor of mif two 3 homolog 1 isoform a prec... 50 4e-07
gi|54792067 SMT3 suppressor of mif two 3 homolog 1 isoform b pre... 38 0.001
gi|20270337 Leo1, Paf1/RNA polymerase II complex component, homo... 29 0.91
gi|11038659 ADAM metallopeptidase with thrombospondin type 1 mot... 28 2.0
gi|110825974 ADAM metallopeptidase with thrombospondin type 1 mo... 28 2.0
gi|170016061 spectrin, beta, non-erythrocytic 5 [Homo sapiens] 27 4.5
gi|5031633 FERM, RhoGEF, and pleckstrin domain protein 1 isoform... 26 7.7
>gi|239754793 PREDICTED: similar to Small ubiquitin-related modifier
2 [Homo sapiens]
Length = 103
Score = 209 bits (533), Expect = 3e-55
Identities = 103/103 (100%), Positives = 103/103 (100%)
Query: 1 MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQLEMEDEGTI 60
MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQLEMEDEGTI
Sbjct: 1 MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQLEMEDEGTI 60
Query: 61 DVFQQQTGVSTEKAAYFFPPELCSLQTRMTFSVRNLQFGSTTS 103
DVFQQQTGVSTEKAAYFFPPELCSLQTRMTFSVRNLQFGSTTS
Sbjct: 61 DVFQQQTGVSTEKAAYFFPPELCSLQTRMTFSVRNLQFGSTTS 103
>gi|239749320 PREDICTED: hypothetical protein XP_002346995 [Homo
sapiens]
Length = 103
Score = 209 bits (533), Expect = 3e-55
Identities = 103/103 (100%), Positives = 103/103 (100%)
Query: 1 MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQLEMEDEGTI 60
MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQLEMEDEGTI
Sbjct: 1 MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQLEMEDEGTI 60
Query: 61 DVFQQQTGVSTEKAAYFFPPELCSLQTRMTFSVRNLQFGSTTS 103
DVFQQQTGVSTEKAAYFFPPELCSLQTRMTFSVRNLQFGSTTS
Sbjct: 61 DVFQQQTGVSTEKAAYFFPPELCSLQTRMTFSVRNLQFGSTTS 103
>gi|239509111 PREDICTED: similar to Small ubiquitin-related modifier
2 [Homo sapiens]
Length = 103
Score = 209 bits (533), Expect = 3e-55
Identities = 103/103 (100%), Positives = 103/103 (100%)
Query: 1 MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQLEMEDEGTI 60
MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQLEMEDEGTI
Sbjct: 1 MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQLEMEDEGTI 60
Query: 61 DVFQQQTGVSTEKAAYFFPPELCSLQTRMTFSVRNLQFGSTTS 103
DVFQQQTGVSTEKAAYFFPPELCSLQTRMTFSVRNLQFGSTTS
Sbjct: 61 DVFQQQTGVSTEKAAYFFPPELCSLQTRMTFSVRNLQFGSTTS 103
>gi|239743410 PREDICTED: hypothetical protein XP_002342830 [Homo
sapiens]
Length = 103
Score = 206 bits (524), Expect = 3e-54
Identities = 101/103 (98%), Positives = 102/103 (99%)
Query: 1 MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQLEMEDEGTI 60
MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQLEMEDEGTI
Sbjct: 1 MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQLEMEDEGTI 60
Query: 61 DVFQQQTGVSTEKAAYFFPPELCSLQTRMTFSVRNLQFGSTTS 103
DVFQQQTGVSTEKAAYFFPPELCSLQT+MTFSVR LQFGSTTS
Sbjct: 61 DVFQQQTGVSTEKAAYFFPPELCSLQTKMTFSVRKLQFGSTTS 103
>gi|54792071 SMT3 suppressor of mif two 3 homolog 2 isoform b
precursor [Homo sapiens]
Length = 71
Score = 118 bits (295), Expect = 1e-27
Identities = 57/68 (83%), Positives = 60/68 (88%)
Query: 1 MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQLEMEDEGTI 60
MA++ EGVKTENNDHINLKV GQD SVVQFKIKRHTPLSKLM AYC+ QLEMEDE TI
Sbjct: 1 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQLEMEDEDTI 60
Query: 61 DVFQQQTG 68
DVFQQQTG
Sbjct: 61 DVFQQQTG 68
>gi|54792069 SMT3 suppressor of mif two 3 homolog 2 isoform a
precursor [Homo sapiens]
Length = 95
Score = 106 bits (265), Expect = 3e-24
Identities = 58/92 (63%), Positives = 61/92 (66%), Gaps = 24/92 (26%)
Query: 1 MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCD----------- 49
MA++ EGVKTENNDHINLKV GQD SVVQFKIKRHTPLSKLM AYC+
Sbjct: 1 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 60
Query: 50 -------------AQLEMEDEGTIDVFQQQTG 68
AQLEMEDE TIDVFQQQTG
Sbjct: 61 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 92
>gi|169169820 PREDICTED: similar to SMT3 supressor of mif two 3
homolog 2 [Homo sapiens]
Length = 70
Score = 105 bits (263), Expect = 6e-24
Identities = 54/68 (79%), Positives = 58/68 (85%), Gaps = 1/68 (1%)
Query: 1 MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQLEMEDEGTI 60
MA+K EGVKT+NN HINLKVVGQ SVVQFKIKRHTPLSKLM AYC+ QLEME+E TI
Sbjct: 1 MADKKPQEGVKTKNN-HINLKVVGQGGSVVQFKIKRHTPLSKLMKAYCELQLEMENEDTI 59
Query: 61 DVFQQQTG 68
DVFQQQ G
Sbjct: 60 DVFQQQMG 67
>gi|239748082 PREDICTED: similar to SMT3 suppressor of mif two 3
homolog 2 [Homo sapiens]
Length = 206
Score = 102 bits (253), Expect = 8e-23
Identities = 48/68 (70%), Positives = 57/68 (83%)
Query: 1 MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQLEMEDEGTI 60
+A++ EG++TEN DHINLKV GQ+ SVVQF+IKRHTPLSKLM AY AQLEMEDE T
Sbjct: 136 VADEKPKEGIETENKDHINLKVAGQEGSVVQFRIKRHTPLSKLMKAYTPAQLEMEDEDTT 195
Query: 61 DVFQQQTG 68
D+FQQQ+G
Sbjct: 196 DMFQQQSG 203
>gi|239741979 PREDICTED: hypothetical protein XP_002342366 [Homo
sapiens]
Length = 164
Score = 102 bits (253), Expect = 8e-23
Identities = 48/68 (70%), Positives = 57/68 (83%)
Query: 1 MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQLEMEDEGTI 60
+A++ EG++TEN DHINLKV GQ+ SVVQF+IKRHTPLSKLM AY AQLEMEDE T
Sbjct: 94 VADEKPKEGIETENKDHINLKVAGQEGSVVQFRIKRHTPLSKLMKAYTPAQLEMEDEDTT 153
Query: 61 DVFQQQTG 68
D+FQQQ+G
Sbjct: 154 DMFQQQSG 161
>gi|50400081 SMT3 suppressor of mif two 3 homolog 4 [Homo sapiens]
Length = 95
Score = 98.2 bits (243), Expect = 1e-21
Identities = 55/92 (59%), Positives = 58/92 (63%), Gaps = 24/92 (26%)
Query: 1 MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCD----------- 49
MAN+ E VKTENN+HINLKV GQD SVVQFKIKR TPLSKLM AYC+
Sbjct: 1 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRF 60
Query: 50 -------------AQLEMEDEGTIDVFQQQTG 68
AQLEMEDE TIDVFQQ TG
Sbjct: 61 RFGGQPISGTDKPAQLEMEDEDTIDVFQQPTG 92
>gi|48928058 small ubiquitin-like modifier protein 3 [Homo
sapiens]
Length = 103
Score = 98.2 bits (243), Expect = 1e-21
Identities = 56/92 (60%), Positives = 59/92 (64%), Gaps = 25/92 (27%)
Query: 1 MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCD----------- 49
M+ + EGVKTEN DHINLKV GQD SVVQFKIKRHTPLSKLM AYC+
Sbjct: 1 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 59
Query: 50 -------------AQLEMEDEGTIDVFQQQTG 68
AQLEMEDE TIDVFQQQTG
Sbjct: 60 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 91
>gi|239754164 PREDICTED: similar to mCG21560 [Homo sapiens]
Length = 93
Score = 84.3 bits (207), Expect = 2e-17
Identities = 39/49 (79%), Positives = 42/49 (85%)
Query: 1 MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCD 49
MA++ EGVKTENNDHINLKV GQD SV QFKIKRHTPLSKLM AYC+
Sbjct: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
>gi|239748701 PREDICTED: similar to mCG21560 [Homo sapiens]
Length = 93
Score = 84.3 bits (207), Expect = 2e-17
Identities = 39/49 (79%), Positives = 42/49 (85%)
Query: 1 MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCD 49
MA++ EGVKTENNDHINLKV GQD SV QFKIKRHTPLSKLM AYC+
Sbjct: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
>gi|239742728 PREDICTED: similar to mCG21560 [Homo sapiens]
Length = 93
Score = 84.3 bits (207), Expect = 2e-17
Identities = 39/49 (79%), Positives = 42/49 (85%)
Query: 1 MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCD 49
MA++ EGVKTENNDHINLKV GQD SV QFKIKRHTPLSKLM AYC+
Sbjct: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
>gi|54792065 SMT3 suppressor of mif two 3 homolog 1 isoform a
precursor [Homo sapiens]
Length = 101
Score = 50.1 bits (118), Expect = 4e-07
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 24/80 (30%)
Query: 13 ENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQ--------------------- 51
+ ++I LKV+GQD S + FK+K T L KL +YC Q
Sbjct: 17 KEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHT 76
Query: 52 ---LEMEDEGTIDVFQQQTG 68
L ME+E I+V+Q+QTG
Sbjct: 77 PKELGMEEEDVIEVYQEQTG 96
>gi|4507801 SMT3 suppressor of mif two 3 homolog 1 isoform a
precursor [Homo sapiens]
Length = 101
Score = 50.1 bits (118), Expect = 4e-07
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 24/80 (30%)
Query: 13 ENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQ--------------------- 51
+ ++I LKV+GQD S + FK+K T L KL +YC Q
Sbjct: 17 KEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHT 76
Query: 52 ---LEMEDEGTIDVFQQQTG 68
L ME+E I+V+Q+QTG
Sbjct: 77 PKELGMEEEDVIEVYQEQTG 96
>gi|54792067 SMT3 suppressor of mif two 3 homolog 1 isoform b
precursor [Homo sapiens]
Length = 76
Score = 38.1 bits (87), Expect = 0.001
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 24/68 (35%)
Query: 25 QDDSVVQFKIKRHTPLSKLMNAYCDAQ------------------------LEMEDEGTI 60
QD S + FK+K T L KL +YC Q L ME+E I
Sbjct: 4 QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVI 63
Query: 61 DVFQQQTG 68
+V+Q+QTG
Sbjct: 64 EVYQEQTG 71
>gi|20270337 Leo1, Paf1/RNA polymerase II complex component, homolog
[Homo sapiens]
Length = 666
Score = 28.9 bits (63), Expect = 0.91
Identities = 16/68 (23%), Positives = 29/68 (42%)
Query: 13 ENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQLEMEDEGTIDVFQQQTGVSTE 72
E DH + G D ++KR ++ A D ++ ++ GT+D+F +S+
Sbjct: 265 EEQDHKSESARGSDSEDEVLRMKRKNAIASDSEADSDTEVPKDNSGTMDLFGGADDISSG 324
Query: 73 KAAYFFPP 80
PP
Sbjct: 325 SDGEDKPP 332
>gi|11038659 ADAM metallopeptidase with thrombospondin type 1 motif,
2 isoform 2 [Homo sapiens]
Length = 566
Score = 27.7 bits (60), Expect = 2.0
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 2 ANKNSNEGVKTENNDHINLKVV-GQDDSVVQFKIKRHTP--LSKLMN 45
AN + + +D N++V+ G DDSVVQF K H L LMN
Sbjct: 250 ANSSRRRARRHAADDDYNIEVLLGVDDSVVQFHGKEHVQKYLLTLMN 296
>gi|110825974 ADAM metallopeptidase with thrombospondin type 1
motif, 2 isoform 1 preproprotein [Homo sapiens]
Length = 1211
Score = 27.7 bits (60), Expect = 2.0
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 2 ANKNSNEGVKTENNDHINLKVV-GQDDSVVQFKIKRHTP--LSKLMN 45
AN + + +D N++V+ G DDSVVQF K H L LMN
Sbjct: 250 ANSSRRRARRHAADDDYNIEVLLGVDDSVVQFHGKEHVQKYLLTLMN 296
>gi|170016061 spectrin, beta, non-erythrocytic 5 [Homo sapiens]
Length = 3639
Score = 26.6 bits (57), Expect = 4.5
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 24 GQDDSVVQFKIKRHTPLSKLMNAYCDAQLEMEDEG 58
GQD + + ++RH L +++ A+ +E++G
Sbjct: 739 GQDQAAAETLLRRHVRLERVLRAFAAELRRLEEQG 773
>gi|5031633 FERM, RhoGEF, and pleckstrin domain protein 1 isoform 1
[Homo sapiens]
Length = 1045
Score = 25.8 bits (55), Expect = 7.7
Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 20/99 (20%)
Query: 12 TENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCD---------AQLEMEDEGTIDV 62
T + +++K+ DD+ F++ + P L++A C+ LE D I V
Sbjct: 34 TPSGKLVSIKIQMLDDTQEAFEVPQRAPGKVLLDAVCNHLNLVEGDYFGLEFPDHKKITV 93
Query: 63 F-----------QQQTGVSTEKAAYFFPPELCSLQTRMT 90
+ ++ V + FFPP+ LQ +T
Sbjct: 94 WLDLLKPIVKQIRRPKHVVVKFVVKFFPPDHTQLQEELT 132
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.128 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,535,094
Number of Sequences: 37866
Number of extensions: 117303
Number of successful extensions: 186
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 159
Number of HSP's gapped (non-prelim): 22
length of query: 103
length of database: 18,247,518
effective HSP length: 74
effective length of query: 29
effective length of database: 15,445,434
effective search space: 447917586
effective search space used: 447917586
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.