Search of human proteins with 239754433

Search of human proteins with 239754433

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239754433 PREDICTED: similar to ATP synthase, H+
transporting, mitochondrial F0 complex, subunit F2 [Homo sapiens]
         (79 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754433 PREDICTED: similar to ATP synthase, H+ transporting...   163   3e-41
gi|85794908 ATP synthase, H+ transporting, mitochondrial F0 comp...    96   8e-21
gi|51479132 ATP synthase, H+ transporting, mitochondrial F0 comp...    91   3e-19
gi|51479129 ATP synthase, H+ transporting, mitochondrial F0 comp...    79   8e-16
gi|4757812 ATP synthase, H+ transporting, mitochondrial F0 compl...    74   3e-14
gi|169179961 PREDICTED: similar to ATP synthase, H+ transporting...    51   2e-07
gi|89030419 PREDICTED: similar to ATP synthase, H+ transporting,...    51   2e-07
gi|89029850 PREDICTED: similar to ATP synthase, H+ transporting,...    51   2e-07
gi|223278377 antimicrobial peptide RY2G5 [Homo sapiens]                28   1.2  
gi|148539872 acetyl-Coenzyme A acetyltransferase 2 [Homo sapiens]      27   3.5  
gi|57242805 tyrosyl-DNA phosphodiesterase 1 [Homo sapiens]             26   7.9  
gi|217330574 EH domain binding protein 1 isoform 3 [Homo sapiens]      26   7.9  
gi|217330572 EH domain binding protein 1 isoform 3 [Homo sapiens]      26   7.9  
gi|20127586 tyrosyl-DNA phosphodiesterase 1 [Homo sapiens]             26   7.9  

>gi|239754433 PREDICTED: similar to ATP synthase, H+ transporting,
          mitochondrial F0 complex, subunit F2 [Homo sapiens]
          Length = 79

 Score =  163 bits (412), Expect = 3e-41
 Identities = 79/79 (100%), Positives = 79/79 (100%)

Query: 1  MLLTAEDTKTAMKISGLKKTEEHSGHQDSKIASVVPVKDKKLLEVKLGELPSWILMGDFS 60
          MLLTAEDTKTAMKISGLKKTEEHSGHQDSKIASVVPVKDKKLLEVKLGELPSWILMGDFS
Sbjct: 1  MLLTAEDTKTAMKISGLKKTEEHSGHQDSKIASVVPVKDKKLLEVKLGELPSWILMGDFS 60

Query: 61 PSGIFGAFQREHEWLRKYH 79
          PSGIFGAFQREHEWLRKYH
Sbjct: 61 PSGIFGAFQREHEWLRKYH 79


>gi|85794908 ATP synthase, H+ transporting, mitochondrial F0
          complex, subunit F2 isoform 2d [Homo sapiens]
          Length = 49

 Score = 95.5 bits (236), Expect = 8e-21
 Identities = 46/49 (93%), Positives = 47/49 (95%)

Query: 31 IASVVPVKDKKLLEVKLGELPSWILMGDFSPSGIFGAFQREHEWLRKYH 79
          +ASVVPVKDKKLLEVKLGELPSWILM DFSPSGIFGAFQREHE LRKYH
Sbjct: 1  MASVVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQREHERLRKYH 49


>gi|51479132 ATP synthase, H+ transporting, mitochondrial F0
          complex, subunit F2 isoform 2c [Homo sapiens]
          Length = 55

 Score = 90.5 bits (223), Expect = 3e-19
 Identities = 43/45 (95%), Positives = 43/45 (95%)

Query: 35 VPVKDKKLLEVKLGELPSWILMGDFSPSGIFGAFQREHEWLRKYH 79
          VPVKDKKLLEVKLGELPSWILM DFSPSGIFGAFQREHE LRKYH
Sbjct: 11 VPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQREHERLRKYH 55


>gi|51479129 ATP synthase, H+ transporting, mitochondrial F0
          complex, subunit F2 isoform 2b [Homo sapiens]
          Length = 88

 Score = 79.0 bits (193), Expect = 8e-16
 Identities = 40/49 (81%), Positives = 43/49 (87%), Gaps = 1/49 (2%)

Query: 31 IASVVPVKDKKLLEVKLGELPSWILMGDFSPSGIFGAFQR-EHEWLRKY 78
          +ASVVPVKDKKLLEVKLGELPSWILM DFSPSGIFGAFQR  + +  KY
Sbjct: 1  MASVVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYRYYNKY 49


>gi|4757812 ATP synthase, H+ transporting, mitochondrial F0
          complex, subunit F2 isoform 2a [Homo sapiens]
          Length = 94

 Score = 73.9 bits (180), Expect = 3e-14
 Identities = 37/45 (82%), Positives = 39/45 (86%), Gaps = 1/45 (2%)

Query: 35 VPVKDKKLLEVKLGELPSWILMGDFSPSGIFGAFQR-EHEWLRKY 78
          VPVKDKKLLEVKLGELPSWILM DFSPSGIFGAFQR  + +  KY
Sbjct: 11 VPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYRYYNKY 55


>gi|169179961 PREDICTED: similar to ATP synthase, H+ transporting,
          mitochondrial F0 complex, subunit F2 [Homo sapiens]
          Length = 85

 Score = 50.8 bits (120), Expect = 2e-07
 Identities = 27/44 (61%), Positives = 30/44 (68%), Gaps = 3/44 (6%)

Query: 31 IASVVPVKDKKLLEVKLGELPSWILMGDFSPSGIFGAFQREHEW 74
          + SV+PVKDKK LEVKLGELPSWILM D     I    QR + W
Sbjct: 1  MTSVIPVKDKKHLEVKLGELPSWILMQD---RVIAAGIQRGYYW 41


>gi|89030419 PREDICTED: similar to ATP synthase, H+ transporting,
          mitochondrial F0 complex, subunit F2 [Homo sapiens]
          Length = 85

 Score = 50.8 bits (120), Expect = 2e-07
 Identities = 27/44 (61%), Positives = 30/44 (68%), Gaps = 3/44 (6%)

Query: 31 IASVVPVKDKKLLEVKLGELPSWILMGDFSPSGIFGAFQREHEW 74
          + SV+PVKDKK LEVKLGELPSWILM D     I    QR + W
Sbjct: 1  MTSVIPVKDKKHLEVKLGELPSWILMQD---RVIAAGIQRGYYW 41


>gi|89029850 PREDICTED: similar to ATP synthase, H+ transporting,
          mitochondrial F0 complex, subunit F2 [Homo sapiens]
          Length = 85

 Score = 50.8 bits (120), Expect = 2e-07
 Identities = 27/44 (61%), Positives = 30/44 (68%), Gaps = 3/44 (6%)

Query: 31 IASVVPVKDKKLLEVKLGELPSWILMGDFSPSGIFGAFQREHEW 74
          + SV+PVKDKK LEVKLGELPSWILM D     I    QR + W
Sbjct: 1  MTSVIPVKDKKHLEVKLGELPSWILMQD---RVIAAGIQRGYYW 41


>gi|223278377 antimicrobial peptide RY2G5 [Homo sapiens]
          Length = 614

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 2   LLTAEDTKTAMKISGLKKTEE-HSGHQDSKIASVVPVKDKKLLEVKLGELPSWILMGDFS 60
           +L +E +   ++ SG +  E  + GH+        PV      E++ GE+P  +  G   
Sbjct: 108 ILESEGSIRDLRNSGYRSAENAYGGHRGLGRYRAAPVGRLHRRELQPGEIPPGVATGAVG 167

Query: 61  PSGIFG 66
           P G+ G
Sbjct: 168 PGGLLG 173


>gi|148539872 acetyl-Coenzyme A acetyltransferase 2 [Homo sapiens]
          Length = 397

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 14/46 (30%), Positives = 22/46 (47%)

Query: 6   EDTKTAMKISGLKKTEEHSGHQDSKIASVVPVKDKKLLEVKLGELP 51
           +  K A+      +  + +GH D +I  V+    K L+EVK  E P
Sbjct: 177 DQDKVAVLSQNRTENAQKAGHFDKEIVPVLVSTRKGLIEVKTDEFP 222


>gi|57242805 tyrosyl-DNA phosphodiesterase 1 [Homo sapiens]
          Length = 608

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 5/39 (12%)

Query: 40  KKLLEVKLGELP---SWILMGDFSPSGIFGAFQREHEWL 75
           KKLL+     +P   SW ++G FS  G  GA   E +WL
Sbjct: 376 KKLLKDHASSMPNAESWPVVGQFSSVGSLGA--DESKWL 412


>gi|217330574 EH domain binding protein 1 isoform 3 [Homo sapiens]
          Length = 1160

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)

Query: 12  MKISGLKKTEEHSGHQDSKIASVVPVKDKKLLEVK 46
           M    LK+  + SG Q+SK+   V +K KKLLEV+
Sbjct: 856 MAAEKLKERSKASGEQNSKL---VDLKLKKLLEVQ 887


>gi|217330572 EH domain binding protein 1 isoform 3 [Homo sapiens]
          Length = 1160

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)

Query: 12  MKISGLKKTEEHSGHQDSKIASVVPVKDKKLLEVK 46
           M    LK+  + SG Q+SK+   V +K KKLLEV+
Sbjct: 856 MAAEKLKERSKASGEQNSKL---VDLKLKKLLEVQ 887


>gi|20127586 tyrosyl-DNA phosphodiesterase 1 [Homo sapiens]
          Length = 608

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 5/39 (12%)

Query: 40  KKLLEVKLGELP---SWILMGDFSPSGIFGAFQREHEWL 75
           KKLL+     +P   SW ++G FS  G  GA   E +WL
Sbjct: 376 KKLLKDHASSMPNAESWPVVGQFSSVGSLGA--DESKWL 412


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,906,207
Number of Sequences: 37866
Number of extensions: 99908
Number of successful extensions: 257
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 248
Number of HSP's gapped (non-prelim): 14
length of query: 79
length of database: 18,247,518
effective HSP length: 51
effective length of query: 28
effective length of database: 16,316,352
effective search space: 456857856
effective search space used: 456857856
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.