Guide to the Human Genome
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Name: SAC3D1 Sequence: fasta or formatted (358aa) NCBI GI: 118918405
Description:

SAC3 domain containing 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.1         54           2
 C cysteine            2.8         10           1
 D aspartate           4.2         15           1
 E glutamate           7.8         28           3
 F phenylalanine       2.8         10           1
 G glycine             7.5         27           1
 H histidine           2.0          7           1
 I isoleucine          0.3          1           1
 K lysine              1.7          6           1
 L leucine            14.0         50           2
 M methionine          1.1          4           1
 N asparagine          0.8          3           1
 P proline             9.2         33           3
 Q glutamine           4.2         15           1
 R arginine           10.6         38           2
 S serine              3.4         12           1
 T threonine           2.8         10           1
 V valine              8.1         29           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.7          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SAC3 domain containing 1 
MCM3AP                0.144   minichromosome maintenance complex component 3 assoc...
LENG8                 0.033   leukocyte receptor cluster member 8 
ITPRIPL2              0.015   inositol 1,4,5-triphosphate receptor interacting pro...
FMNL1                 0.015   formin-like 1 
IMP3                  0.015   U3 snoRNP protein 3 homolog 
LOC100290009          0.013   PREDICTED: hypothetical protein XP_002346608 
LOC100287250          0.013   PREDICTED: hypothetical protein XP_002344493 
LOC100288104          0.013   PREDICTED: hypothetical protein XP_002342450 
MLL4                  0.012   myeloid/lymphoid or mixed-lineage leukemia 4 
USP51                 0.012   ubiquitin specific protease 51 
LOC100293818          0.012   PREDICTED: hypothetical protein 
CECR6                 0.010   cat eye syndrome chromosome region, candidate 6 iso...
CECR6                 0.010   cat eye syndrome chromosome region, candidate 6 isof...
MESP1                 0.010   mesoderm posterior 1 
SIN3A                 0.009   transcriptional co-repressor Sin3A 
SIN3A                 0.009   transcriptional co-repressor Sin3A 
SIN3A                 0.009   transcriptional co-repressor Sin3A 
LOC645529             0.009   PREDICTED: similar to Putative acrosin-like proteas...
ZC3H18                0.009   zinc finger CCCH-type containing 18 
PRR12                 0.009   proline rich 12 
LOC100293453          0.007   PREDICTED: hypothetical protein 
LOC100292757          0.007   PREDICTED: hypothetical protein 
LOC100288459          0.007   PREDICTED: hypothetical protein 
LOC100291505          0.007   PREDICTED: hypothetical protein XP_002347172 
LOC100288459          0.007   PREDICTED: hypothetical protein XP_002343705 
LOC100288189          0.007   PREDICTED: hypothetical protein XP_002343065 
JPH2                  0.007   junctophilin 2 isoform 1 
SPEG                  0.007   SPEG complex locus 
KRBA1                 0.007   KRAB A domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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