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Search of human proteins with 239754245
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754245 PREDICTED: hypothetical protein [Homo sapiens]
(160 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754245 PREDICTED: hypothetical protein [Homo sapiens] 326 5e-90
gi|239748777 PREDICTED: hypothetical protein [Homo sapiens] 185 1e-47
gi|169169586 PREDICTED: hypothetical protein [Homo sapiens] 185 1e-47
gi|68800350 interleukin-1 receptor-associated kinase 1 isoform 3... 31 0.52
gi|68800343 interleukin-1 receptor-associated kinase 1 isoform 2... 31 0.52
gi|68800243 interleukin-1 receptor-associated kinase 1 isoform 1... 31 0.52
gi|138175817 zinc finger protein 236 [Homo sapiens] 30 1.2
gi|150170718 zinc finger protein 292 [Homo sapiens] 29 1.5
gi|30023820 hypothetical protein LOC162427 [Homo sapiens] 28 3.4
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens] 28 4.4
gi|132566538 chorionic gonadotropin, beta polypeptide 2 [Homo sa... 28 4.4
gi|15451750 chorionic gonadotropin, beta polypeptide 7 precursor... 28 4.4
gi|4502789 chorionic gonadotropin beta 3 subunit precursor [Homo... 27 5.7
gi|15451748 chorionic gonadotropin, beta polypeptide 5 precursor... 27 5.7
gi|29570782 additional sex combs like 1 [Homo sapiens] 27 5.7
gi|132566537 chorionic gonadotropin, beta polypeptide 1 [Homo sa... 27 5.7
gi|15426252 chorionic gonadotropin, beta polypeptide 8 precursor... 27 5.7
gi|239753928 PREDICTED: hypothetical protein [Homo sapiens] 27 7.5
gi|11386161 alpha 2 type IX collagen [Homo sapiens] 27 7.5
gi|39777606 Rho guanine nucleotide exchange factor 1 isoform 1 [... 27 7.5
gi|39777604 Rho guanine nucleotide exchange factor 1 isoform 3 [... 27 7.5
gi|15011972 Rho guanine nucleotide exchange factor 1 isoform 2 [... 27 7.5
gi|239745068 PREDICTED: similar to hCG2042704 [Homo sapiens] 27 9.8
gi|55770870 l(3)mbt-like 3 isoform a [Homo sapiens] 27 9.8
>gi|239754245 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 326 bits (836), Expect = 5e-90
Identities = 160/160 (100%), Positives = 160/160 (100%)
Query: 1 MMVQMPSGKACALTTWLLPSATQKQPSLPSDGKNYAEENLQRDRSSATKTDNLRGLTAER 60
MMVQMPSGKACALTTWLLPSATQKQPSLPSDGKNYAEENLQRDRSSATKTDNLRGLTAER
Sbjct: 1 MMVQMPSGKACALTTWLLPSATQKQPSLPSDGKNYAEENLQRDRSSATKTDNLRGLTAER 60
Query: 61 NTTQNKLPRVAAVFRAADWGFGRSEQHLRGLTLIISCTLSHKPASLRRSGTQAWGPRGLP 120
NTTQNKLPRVAAVFRAADWGFGRSEQHLRGLTLIISCTLSHKPASLRRSGTQAWGPRGLP
Sbjct: 61 NTTQNKLPRVAAVFRAADWGFGRSEQHLRGLTLIISCTLSHKPASLRRSGTQAWGPRGLP 120
Query: 121 LRATPESFKGSPDCTGPEIGFDMELLRSSLERRPAHSSRS 160
LRATPESFKGSPDCTGPEIGFDMELLRSSLERRPAHSSRS
Sbjct: 121 LRATPESFKGSPDCTGPEIGFDMELLRSSLERRPAHSSRS 160
>gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 350
Score = 185 bits (470), Expect = 1e-47
Identities = 89/98 (90%), Positives = 92/98 (93%)
Query: 63 TQNKLPRVAAVFRAADWGFGRSEQHLRGLTLIISCTLSHKPASLRRSGTQAWGPRGLPLR 122
T+++ VFRAADWGFGRSEQHLRGLTLIISCTLSHKPASLRRSGTQAWGPRGLPLR
Sbjct: 253 TRDRTSSRGTVFRAADWGFGRSEQHLRGLTLIISCTLSHKPASLRRSGTQAWGPRGLPLR 312
Query: 123 ATPESFKGSPDCTGPEIGFDMELLRSSLERRPAHSSRS 160
ATPESFKGSPDCTGPEIGFDMELLRSSLERRPAHSSRS
Sbjct: 313 ATPESFKGSPDCTGPEIGFDMELLRSSLERRPAHSSRS 350
>gi|169169586 PREDICTED: hypothetical protein [Homo sapiens]
Length = 251
Score = 185 bits (470), Expect = 1e-47
Identities = 99/142 (69%), Positives = 104/142 (73%), Gaps = 15/142 (10%)
Query: 19 PSATQKQPSLPSDGKNYAEENLQRDRSSATKTDNLRGLTAERNTTQNKLPRVAAVFRAAD 78
P+ +++ P P G+ R SA T G R R VFRAAD
Sbjct: 125 PNPSRRLPPAPPGGR--------RTWLSALATGPAAGGAGRRR-------RSPPVFRAAD 169
Query: 79 WGFGRSEQHLRGLTLIISCTLSHKPASLRRSGTQAWGPRGLPLRATPESFKGSPDCTGPE 138
WGFGRSEQHLRGLTLIISCTLSHKPASLRRSGTQAWGPRGLPLRATPESFKGSPDCTGPE
Sbjct: 170 WGFGRSEQHLRGLTLIISCTLSHKPASLRRSGTQAWGPRGLPLRATPESFKGSPDCTGPE 229
Query: 139 IGFDMELLRSSLERRPAHSSRS 160
IGFDMELLRSSLERRPAHSSRS
Sbjct: 230 IGFDMELLRSSLERRPAHSSRS 251
>gi|68800350 interleukin-1 receptor-associated kinase 1 isoform 3
[Homo sapiens]
Length = 633
Score = 30.8 bits (68), Expect = 0.52
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 17/71 (23%)
Query: 87 HLRGLTLIISCTLSHKPASLRRSGT--------------QAWGPRGLPLRAT---PESFK 129
HL+ L T H PA L GT +AW PR LP A+ +F
Sbjct: 89 HLQLLRARDIITAWHPPAPLPSPGTTAPRPSSIPAPAEAEAWSPRKLPSSASTFLSPAFP 148
Query: 130 GSPDCTGPEIG 140
GS +GPE+G
Sbjct: 149 GSQTHSGPELG 159
>gi|68800343 interleukin-1 receptor-associated kinase 1 isoform 2
[Homo sapiens]
Length = 682
Score = 30.8 bits (68), Expect = 0.52
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 17/71 (23%)
Query: 87 HLRGLTLIISCTLSHKPASLRRSGT--------------QAWGPRGLPLRAT---PESFK 129
HL+ L T H PA L GT +AW PR LP A+ +F
Sbjct: 89 HLQLLRARDIITAWHPPAPLPSPGTTAPRPSSIPAPAEAEAWSPRKLPSSASTFLSPAFP 148
Query: 130 GSPDCTGPEIG 140
GS +GPE+G
Sbjct: 149 GSQTHSGPELG 159
>gi|68800243 interleukin-1 receptor-associated kinase 1 isoform 1
[Homo sapiens]
Length = 712
Score = 30.8 bits (68), Expect = 0.52
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 17/71 (23%)
Query: 87 HLRGLTLIISCTLSHKPASLRRSGT--------------QAWGPRGLPLRAT---PESFK 129
HL+ L T H PA L GT +AW PR LP A+ +F
Sbjct: 89 HLQLLRARDIITAWHPPAPLPSPGTTAPRPSSIPAPAEAEAWSPRKLPSSASTFLSPAFP 148
Query: 130 GSPDCTGPEIG 140
GS +GPE+G
Sbjct: 149 GSQTHSGPELG 159
>gi|138175817 zinc finger protein 236 [Homo sapiens]
Length = 1845
Score = 29.6 bits (65), Expect = 1.2
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 2 MVQMPSGKACALTTWLLPSATQKQPSLPSDGKNYAEENLQRDRSS 46
++Q PS +TT L+ ++Q++ L + G + E+N + R S
Sbjct: 922 LLQAPSSDGMNVTTRLIQESSQEELDLQAQGSQFLEDNEDQSRRS 966
>gi|150170718 zinc finger protein 292 [Homo sapiens]
Length = 2723
Score = 29.3 bits (64), Expect = 1.5
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 20 SATQKQPSLPSDGKN-YAEENLQRDRSSATKTDNLRGLTAERNTTQNKLPRV--AAVFRA 76
++ + Q + S+ N + E+NL + S K NL+ + E+N +QNK +V A A
Sbjct: 2498 TSVETQANTSSNVSNDFQEDNLCQ--SERQKASNLKRVNKEKNVSQNKKRKVEKAEPASA 2555
Query: 77 ADWGFGRSEQHLRGLTLIISCTLSHKPASLRRSGTQAWG 115
A+ R E+ T + T+ PAS S + G
Sbjct: 2556 AELSSVRKEEE----TAVAIQTIEEHPASFDWSSFKPMG 2590
>gi|30023820 hypothetical protein LOC162427 [Homo sapiens]
Length = 466
Score = 28.1 bits (61), Expect = 3.4
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 91 LTLIISCTLSHKPASLRRSGTQAWGPRGLPLRATPESFKGSP--DCTGPEIGFDMELL-R 147
LT ++ +S L SG GP G P + F SP D G D ELL +
Sbjct: 393 LTSNLASLVSQGMIQLALSGASQPGPSGAPAQRATRGFLRSPSSDLDTDAEGDDFELLDQ 452
Query: 148 SSLERRPAHSSRS 160
S L + SSRS
Sbjct: 453 SELSQLDPASSRS 465
>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
Length = 1712
Score = 27.7 bits (60), Expect = 4.4
Identities = 13/23 (56%), Positives = 13/23 (56%)
Query: 115 GPRGLPLRATPESFKGSPDCTGP 137
GPRGLP A E F G P GP
Sbjct: 717 GPRGLPGDAGREGFPGPPGFIGP 739
>gi|132566538 chorionic gonadotropin, beta polypeptide 2 [Homo
sapiens]
Length = 163
Score = 27.7 bits (60), Expect = 4.4
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 67 LPRVAAVFRAADWGFGRSEQHLRGLTLIIS--CTLSHKPASLRRSGTQAWGPRGLPLRAT 124
LP+V +R + R RG+ ++S LS + A RRS T GP+ PL
Sbjct: 70 LPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGGPKDHPLTCD 129
Query: 125 PESFKGSPDCTGP 137
F+ S P
Sbjct: 130 DPRFQASSSSKAP 142
>gi|15451750 chorionic gonadotropin, beta polypeptide 7 precursor
[Homo sapiens]
Length = 165
Score = 27.7 bits (60), Expect = 4.4
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 67 LPRVAAVFRAADWGFGRSEQHLRGLTLIIS--CTLSHKPASLRRSGTQAWGPRGLPLRAT 124
LP+V +R + R RG+ ++S LS + A RRS T GP+ PL
Sbjct: 72 LPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGGPKDHPLTCD 131
Query: 125 PESFKGSPDCTGP 137
F+ S P
Sbjct: 132 DPRFQASSSSKAP 144
>gi|4502789 chorionic gonadotropin beta 3 subunit precursor [Homo
sapiens]
Length = 165
Score = 27.3 bits (59), Expect = 5.7
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 67 LPRVAAVFRAADWGFGRSEQHLRGLTLIIS--CTLSHKPASLRRSGTQAWGPRGLPLRAT 124
LP+V +R + R RG+ ++S LS + A RRS T GP+ PL
Sbjct: 72 LPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGGPKDHPLTCD 131
Query: 125 PESFKGSPDCTGP 137
F+ S P
Sbjct: 132 DPRFQDSSSSKAP 144
>gi|15451748 chorionic gonadotropin, beta polypeptide 5 precursor
[Homo sapiens]
Length = 165
Score = 27.3 bits (59), Expect = 5.7
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 67 LPRVAAVFRAADWGFGRSEQHLRGLTLIIS--CTLSHKPASLRRSGTQAWGPRGLPLRAT 124
LP+V +R + R RG+ ++S LS + A RRS T GP+ PL
Sbjct: 72 LPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGGPKDHPLTCD 131
Query: 125 PESFKGSPDCTGP 137
F+ S P
Sbjct: 132 DPRFQDSSSSKAP 144
>gi|29570782 additional sex combs like 1 [Homo sapiens]
Length = 1541
Score = 27.3 bits (59), Expect = 5.7
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 106 LRRSGTQAWGPRGLPLRATPESFKGSPDCTGPEIGFDMELLRSSLERRPAHSSRS 160
L + G P GL P + +PD GPE F +E + S ++ P + +R+
Sbjct: 448 LYKDGEAKTDPAGLSSPHLPGTSSAAPDLEGPE--FPVESVASRIQAEPDNLARA 500
>gi|132566537 chorionic gonadotropin, beta polypeptide 1 [Homo
sapiens]
Length = 155
Score = 27.3 bits (59), Expect = 5.7
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 67 LPRVAAVFRAADWGFGRSEQHLRGLTLIIS--CTLSHKPASLRRSGTQAWGPRGLPLRAT 124
LP+V +R + R RG+ ++S LS + A RRS T GP+ PL
Sbjct: 70 LPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGGPKDHPLTCD 129
Query: 125 PESFKGSPDCTGP 137
F+ S P
Sbjct: 130 DPRFQDSSSSKAP 142
>gi|15426252 chorionic gonadotropin, beta polypeptide 8 precursor
[Homo sapiens]
Length = 165
Score = 27.3 bits (59), Expect = 5.7
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 67 LPRVAAVFRAADWGFGRSEQHLRGLTLIIS--CTLSHKPASLRRSGTQAWGPRGLPLRAT 124
LP+V +R + R RG+ ++S LS + A RRS T GP+ PL
Sbjct: 72 LPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGGPKDHPLTCD 131
Query: 125 PESFKGSPDCTGP 137
F+ S P
Sbjct: 132 DPRFQDSSSSKAP 144
>gi|239753928 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1179
Score = 26.9 bits (58), Expect = 7.5
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 132 PDCTGPEIGFDME-LLRSSLERRPAH 156
P C GP++GF LLR+S ++ +H
Sbjct: 968 PGCQGPDVGFASNLLLRNSFPKKASH 993
>gi|11386161 alpha 2 type IX collagen [Homo sapiens]
Length = 689
Score = 26.9 bits (58), Expect = 7.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 115 GPRGLPLRATPESFKGSPDCTGPE 138
GPRG P RA + +GSP GP+
Sbjct: 268 GPRGPPGRAGEKGDEGSPGIRGPQ 291
>gi|39777606 Rho guanine nucleotide exchange factor 1 isoform 1
[Homo sapiens]
Length = 927
Score = 26.9 bits (58), Expect = 7.5
Identities = 18/51 (35%), Positives = 21/51 (41%)
Query: 104 ASLRRSGTQAWGPRGLPLRATPESFKGSPDCTGPEIGFDMELLRSSLERRP 154
A L + GP L A PES + PE G + E RS LE P
Sbjct: 357 APLELGDSSPQGPMSLESLAPPESTDEGAETESPEPGDEGEPGRSGLELEP 407
>gi|39777604 Rho guanine nucleotide exchange factor 1 isoform 3
[Homo sapiens]
Length = 879
Score = 26.9 bits (58), Expect = 7.5
Identities = 18/51 (35%), Positives = 21/51 (41%)
Query: 104 ASLRRSGTQAWGPRGLPLRATPESFKGSPDCTGPEIGFDMELLRSSLERRP 154
A L + GP L A PES + PE G + E RS LE P
Sbjct: 309 APLELGDSSPQGPMSLESLAPPESTDEGAETESPEPGDEGEPGRSGLELEP 359
>gi|15011972 Rho guanine nucleotide exchange factor 1 isoform 2
[Homo sapiens]
Length = 912
Score = 26.9 bits (58), Expect = 7.5
Identities = 18/51 (35%), Positives = 21/51 (41%)
Query: 104 ASLRRSGTQAWGPRGLPLRATPESFKGSPDCTGPEIGFDMELLRSSLERRP 154
A L + GP L A PES + PE G + E RS LE P
Sbjct: 342 APLELGDSSPQGPMSLESLAPPESTDEGAETESPEPGDEGEPGRSGLELEP 392
>gi|239745068 PREDICTED: similar to hCG2042704 [Homo sapiens]
Length = 618
Score = 26.6 bits (57), Expect = 9.8
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 21 ATQKQPSLPSDGKNYAEENLQRDRSSATKTDNLRGLTAERNTTQNKL--PRVAAVFRAAD 78
A + P P KNYAE D S DN T E +T +NK P+ + + D
Sbjct: 523 AVLRAPVPPGGAKNYAES----DHSEDEDNDN-NSATTEESTKKNKKKPPKKTSRYERTD 577
Query: 79 WG 80
G
Sbjct: 578 TG 579
>gi|55770870 l(3)mbt-like 3 isoform a [Homo sapiens]
Length = 780
Score = 26.6 bits (57), Expect = 9.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 9 KACALTTWLLPSATQKQPSLPS 30
KA A TTW++P+A + S PS
Sbjct: 57 KATATTTWMVPTAQEAPTSPPS 78
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.128 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,594,619
Number of Sequences: 37866
Number of extensions: 295598
Number of successful extensions: 1030
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1016
Number of HSP's gapped (non-prelim): 28
length of query: 160
length of database: 18,247,518
effective HSP length: 94
effective length of query: 66
effective length of database: 14,688,114
effective search space: 969415524
effective search space used: 969415524
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.