Search of human proteins with 239753510

Search of human proteins with 239753510

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239753510 PREDICTED: hypothetical protein [Homo sapiens]
         (284 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753510 PREDICTED: hypothetical protein [Homo sapiens]           578   e-165
gi|239742053 PREDICTED: hypothetical protein XP_002342380 [Homo ...   561   e-160
gi|239748155 PREDICTED: hypothetical protein XP_002346540 [Homo ...    94   1e-19
gi|239757587 PREDICTED: similar to Putative uncharacterized C21o...    36   0.044
gi|239752092 PREDICTED: hypothetical protein [Homo sapiens]            36   0.044
gi|239746589 PREDICTED: hypothetical protein XP_002343791 [Homo ...    36   0.044
gi|26051273 voltage-gated potassium channel, subfamily H, member...    35   0.075
gi|4557729 voltage-gated potassium channel, subfamily H, member ...    35   0.075
gi|38569491 serine/threonine-protein kinase QSK [Homo sapiens]         33   0.28 
gi|87162461 fragile X mental retardation 2 [Homo sapiens]              33   0.37 
gi|169184624 PREDICTED: similar to synaptotagmin XV-b [Homo sapi...    31   1.4  
gi|124001558 ubiquitin specific peptidase 54 [Homo sapiens]            31   1.4  
gi|116292168 KRAB A domain containing 1 [Homo sapiens]                 31   1.4  
gi|205830473 sialic acid binding Ig-like lectin 11 isoform 2 [Ho...    30   1.8  
gi|205830470 sialic acid binding Ig-like lectin 11 isoform 1 [Ho...    30   1.8  
gi|7661858 Rho GTPase activating protein 11A isoform 1 [Homo sap...    30   1.8  
gi|45580740 leukocyte specific transcript 1 isoform 4 [Homo sapi...    30   2.4  
gi|45505161 leukocyte specific transcript 1 isoform 2 [Homo sapi...    30   2.4  
gi|45505165 leukocyte specific transcript 1 isoform 1 [Homo sapi...    30   2.4  
gi|161353481 zinc finger protein 187 isoform a [Homo sapiens]          30   2.4  
gi|91754185 hypothetical protein LOC254268 [Homo sapiens]              30   3.1  
gi|171543825 gamma-glutamyltransferase 6 isoform a [Homo sapiens]      29   4.1  
gi|171543823 gamma-glutamyltransferase 6 isoform b [Homo sapiens]      29   4.1  
gi|161353483 zinc finger protein 187 isoform b [Homo sapiens]          29   4.1  
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    29   5.4  
gi|122937223 NOBOX oogenesis homeobox [Homo sapiens]                   29   5.4  
gi|56549666 tyrosine kinase, non-receptor, 2 isoform 1 [Homo sap...    28   7.0  
gi|58331191 tyrosine kinase, non-receptor, 2 isoform 2 [Homo sap...    28   7.0  
gi|93352558 rhomboid, veinlet-like 6 isoform 2 [Homo sapiens]          28   7.0  
gi|93352556 rhomboid, veinlet-like 6 isoform 1 [Homo sapiens]          28   7.0  

>gi|239753510 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 284

 Score =  578 bits (1489), Expect = e-165
 Identities = 284/284 (100%), Positives = 284/284 (100%)

Query: 1   MVQMEEVLNTGHPWGPSTQGPALGPVLADLRQAELRAGKDKSPLCLGILPTSPTGQPELH 60
           MVQMEEVLNTGHPWGPSTQGPALGPVLADLRQAELRAGKDKSPLCLGILPTSPTGQPELH
Sbjct: 1   MVQMEEVLNTGHPWGPSTQGPALGPVLADLRQAELRAGKDKSPLCLGILPTSPTGQPELH 60

Query: 61  MSLLTDCDDSSRACSKAPTCDGALQSRLKCAFQNSSLGPLRTLCKQLHESVGQLPKVLRI 120
           MSLLTDCDDSSRACSKAPTCDGALQSRLKCAFQNSSLGPLRTLCKQLHESVGQLPKVLRI
Sbjct: 61  MSLLTDCDDSSRACSKAPTCDGALQSRLKCAFQNSSLGPLRTLCKQLHESVGQLPKVLRI 120

Query: 121 ELLVEALLTSKPPAHPSHLPLSWENTQPHVQLSLDTGKQDTGRSPGLPLRLAVFQEELAL 180
           ELLVEALLTSKPPAHPSHLPLSWENTQPHVQLSLDTGKQDTGRSPGLPLRLAVFQEELAL
Sbjct: 121 ELLVEALLTSKPPAHPSHLPLSWENTQPHVQLSLDTGKQDTGRSPGLPLRLAVFQEELAL 180

Query: 181 TAALGEQQGRDERVSTAFRHRASLKLREHKPGESCSQRPRSHKAACRAAALFLEQRTGTV 240
           TAALGEQQGRDERVSTAFRHRASLKLREHKPGESCSQRPRSHKAACRAAALFLEQRTGTV
Sbjct: 181 TAALGEQQGRDERVSTAFRHRASLKLREHKPGESCSQRPRSHKAACRAAALFLEQRTGTV 240

Query: 241 SMSMMVLGLSRRKTMGHANLGGIKATWACQKSQSQSPPPGRHRP 284
           SMSMMVLGLSRRKTMGHANLGGIKATWACQKSQSQSPPPGRHRP
Sbjct: 241 SMSMMVLGLSRRKTMGHANLGGIKATWACQKSQSQSPPPGRHRP 284


>gi|239742053 PREDICTED: hypothetical protein XP_002342380 [Homo
           sapiens]
          Length = 311

 Score =  561 bits (1445), Expect = e-160
 Identities = 283/311 (90%), Positives = 283/311 (90%), Gaps = 27/311 (8%)

Query: 1   MVQMEEVLNTGHPWGPSTQGPALGPVLADLRQAELRAGKDKSPLCLGILPTSPTGQPELH 60
           MVQMEEVLNTGHPWGPSTQGPALGPVLADLRQAELRAGKDKSPLCLGILPTSPTGQPELH
Sbjct: 1   MVQMEEVLNTGHPWGPSTQGPALGPVLADLRQAELRAGKDKSPLCLGILPTSPTGQPELH 60

Query: 61  MSLLTDCDDSSRACSKAPTCDGALQSRLK---------------------------CAFQ 93
           MSLLTDCDDSSRACSKAPTCDGALQSRLK                           CAFQ
Sbjct: 61  MSLLTDCDDSSRACSKAPTCDGALQSRLKGLCTQKQGGGRGLGAGSKRLHRPPGFQCAFQ 120

Query: 94  NSSLGPLRTLCKQLHESVGQLPKVLRIELLVEALLTSKPPAHPSHLPLSWENTQPHVQLS 153
           NSSLGPLRTLCKQLHESVGQLPKVLRIELLVEALLTSKPPAHPSHLP SWENTQPHVQLS
Sbjct: 121 NSSLGPLRTLCKQLHESVGQLPKVLRIELLVEALLTSKPPAHPSHLPSSWENTQPHVQLS 180

Query: 154 LDTGKQDTGRSPGLPLRLAVFQEELALTAALGEQQGRDERVSTAFRHRASLKLREHKPGE 213
           LDTGKQDTGRSPGLPLRLAVFQEELALTAALGEQQGRDERVSTAFRHRASLKLREHKPGE
Sbjct: 181 LDTGKQDTGRSPGLPLRLAVFQEELALTAALGEQQGRDERVSTAFRHRASLKLREHKPGE 240

Query: 214 SCSQRPRSHKAACRAAALFLEQRTGTVSMSMMVLGLSRRKTMGHANLGGIKATWACQKSQ 273
           SCSQRPRSHKAACRAAALFLEQRTGTVSMSMMVLGLSRRKTMGHANLGGIKATWACQKSQ
Sbjct: 241 SCSQRPRSHKAACRAAALFLEQRTGTVSMSMMVLGLSRRKTMGHANLGGIKATWACQKSQ 300

Query: 274 SQSPPPGRHRP 284
           SQSPPPGRHRP
Sbjct: 301 SQSPPPGRHRP 311


>gi|239748155 PREDICTED: hypothetical protein XP_002346540 [Homo
           sapiens]
          Length = 43

 Score = 94.0 bits (232), Expect = 1e-19
 Identities = 43/43 (100%), Positives = 43/43 (100%)

Query: 242 MSMMVLGLSRRKTMGHANLGGIKATWACQKSQSQSPPPGRHRP 284
           MSMMVLGLSRRKTMGHANLGGIKATWACQKSQSQSPPPGRHRP
Sbjct: 1   MSMMVLGLSRRKTMGHANLGGIKATWACQKSQSQSPPPGRHRP 43


>gi|239757587 PREDICTED: similar to Putative uncharacterized
           C21orf104 protein [Homo sapiens]
          Length = 265

 Score = 35.8 bits (81), Expect = 0.044
 Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 7/72 (9%)

Query: 74  CSKAPTCDGALQSRLKCAFQNSS---LGPLRTLCKQLHESVGQLPKVL--RIELLVEALL 128
           C++A     +L  R K   QN S   L P    C QLH    Q+P++   R+ L  EAL 
Sbjct: 190 CAQAQLQQASLPERAKS--QNKSRPLLLPDTHRCPQLHPRTAQIPQIAVKRVSLCSEALS 247

Query: 129 TSKPPAHPSHLP 140
            S+PP  P   P
Sbjct: 248 NSEPPRVPDPAP 259


>gi|239752092 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 265

 Score = 35.8 bits (81), Expect = 0.044
 Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 7/72 (9%)

Query: 74  CSKAPTCDGALQSRLKCAFQNSS---LGPLRTLCKQLHESVGQLPKVL--RIELLVEALL 128
           C++A     +L  R K   QN S   L P    C QLH    Q+P++   R+ L  EAL 
Sbjct: 190 CAQAQLQQASLPERAKS--QNKSRPLLLPDTHRCPQLHPRTAQIPQIAVKRVSLCSEALS 247

Query: 129 TSKPPAHPSHLP 140
            S+PP  P   P
Sbjct: 248 NSEPPRVPDPAP 259


>gi|239746589 PREDICTED: hypothetical protein XP_002343791 [Homo
           sapiens]
          Length = 265

 Score = 35.8 bits (81), Expect = 0.044
 Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 7/72 (9%)

Query: 74  CSKAPTCDGALQSRLKCAFQNSS---LGPLRTLCKQLHESVGQLPKVL--RIELLVEALL 128
           C++A     +L  R K   QN S   L P    C QLH    Q+P++   R+ L  EAL 
Sbjct: 190 CAQAQLQQASLPERAKS--QNKSRPLLLPDTHRCPQLHPRTAQIPQIAVKRVSLCSEALS 247

Query: 129 TSKPPAHPSHLP 140
            S+PP  P   P
Sbjct: 248 NSEPPRVPDPAP 259


>gi|26051273 voltage-gated potassium channel, subfamily H, member 2
           isoform c [Homo sapiens]
          Length = 819

 Score = 35.0 bits (79), Expect = 0.075
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 11  GHPWGPSTQGPALGPVLADLRQAELRAGKDKSPLCLGILPTS---PTGQPELHMSLLTDC 67
           G P GP  + P+ GP   +  + E   G+  SPL L  +P S   P G+P     L+ DC
Sbjct: 581 GRPGGPWGESPSSGPSSPESSEDE-GPGRSSSPLRL--VPFSSPRPPGEPPGGEPLMEDC 637

Query: 68  DDSSRACS 75
           + SS  C+
Sbjct: 638 EKSSDTCN 645


>gi|4557729 voltage-gated potassium channel, subfamily H, member 2
           isoform a [Homo sapiens]
          Length = 1159

 Score = 35.0 bits (79), Expect = 0.075
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 11  GHPWGPSTQGPALGPVLADLRQAELRAGKDKSPLCLGILPTS---PTGQPELHMSLLTDC 67
           G P GP  + P+ GP   +  + E   G+  SPL L  +P S   P G+P     L+ DC
Sbjct: 921 GRPGGPWGESPSSGPSSPESSEDE-GPGRSSSPLRL--VPFSSPRPPGEPPGGEPLMEDC 977

Query: 68  DDSSRACS 75
           + SS  C+
Sbjct: 978 EKSSDTCN 985


>gi|38569491 serine/threonine-protein kinase QSK [Homo sapiens]
          Length = 1263

 Score = 33.1 bits (74), Expect = 0.28
 Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 34/162 (20%)

Query: 99  PLRTLCKQLHESVGQLPKVLRIELLVEALLTSKPPAHPS-HL---------PLSWENTQP 148
           PL+  C+     +    + LRI+       +S PP HP+ HL         P+S    QP
Sbjct: 648 PLQAACENQPALLTHQLQRLRIQP------SSPPPNHPNNHLFRQPSNSPPPMSSAMIQP 701

Query: 149 HVQLSLDTGKQDTGRSPGLPLRLAVFQEE---------LALTAALGEQQGRDERVSTAFR 199
           H       G   + +  GLP R A+FQ++         +ALT    +Q  + ++V+   +
Sbjct: 702 H-------GAASSSQFQGLPSRSAIFQQQPENCSSPPNVALTCLGMQQPAQSQQVT--IQ 752

Query: 200 HRASLKLREHKPGESCSQRPRSHKAACRAAALFLEQRTGTVS 241
            +  + +  + PG +     R    +  A  + ++ RT  ++
Sbjct: 753 VQEPVDMLSNMPGTAAGSSGRGISISPSAGQMQMQHRTNLMA 794


>gi|87162461 fragile X mental retardation 2 [Homo sapiens]
          Length = 1311

 Score = 32.7 bits (73), Expect = 0.37
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 11/97 (11%)

Query: 68  DDSSRACSKAPTCDGALQSRLKCAFQNSSLGPLRTLCKQLHESVGQLPKVLRIELLVEAL 127
           D ++RA +K+ +    L+  LK +     L P++TL  Q   +            L +A+
Sbjct: 407 DPTTRASTKSVSFKSMLEDDLKLSSDEDDLEPVKTLTTQCTATE-----------LYQAV 455

Query: 128 LTSKPPAHPSHLPLSWENTQPHVQLSLDTGKQDTGRS 164
             +KP  +P + PL+     P VQ S  +G      S
Sbjct: 456 EKAKPRNNPVNPPLATPQPPPAVQASGGSGSSSESES 492


>gi|169184624 PREDICTED: similar to synaptotagmin XV-b [Homo
           sapiens]
          Length = 267

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 35/114 (30%), Positives = 41/114 (35%), Gaps = 24/114 (21%)

Query: 8   LNTGHPWGPSTQGPAL--------------GPVLADLRQAELRAGKDKSPLCLGILPTSP 53
           L  G PW P   GPAL               P    L   + RAG    P   G LP   
Sbjct: 86  LAAGSPWRPWRPGPALAGALRFPGAHGRLCAPPPPGLGLGQGRAGAGLRPRGAGSLPLPC 145

Query: 54  TGQ---PELHMSLLTDCDDSSRACSKAPTCDGALQSRLKCAFQNSSLGPLRTLC 104
           T +   P+L  S  TD     R C++     GAL+  L  A Q     P R  C
Sbjct: 146 TARLPAPQLGTSSTTD-----RPCARPTAPRGALRDGL--AAQPQPPRPARPAC 192


>gi|124001558 ubiquitin specific peptidase 54 [Homo sapiens]
          Length = 1684

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 140  PLSWENTQPHVQLSLDTGKQDTGRSPGLPLRLA---VFQEELA 179
            PLSWE +  H  L+L++G  +   S G   RLA   ++QE+L+
Sbjct: 1196 PLSWEESTEHSSLALNSGLPNGETSSGGQPRLAEPDIYQEKLS 1238


>gi|116292168 KRAB A domain containing 1 [Homo sapiens]
          Length = 1030

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 24/57 (42%), Positives = 26/57 (45%), Gaps = 8/57 (14%)

Query: 34  ELRAGKDKSPL--CLGILPTSPTGQPELHMSLLTDCDDSSRACSKAPTCDGALQSRL 88
           E  A ++  PL   L  LP  PT QP     L T   DSS  CS  PT DG   S L
Sbjct: 103 EAAAAREPCPLRGLLSCLPDGPTSQPH----LATTPTDSS--CSSGPTGDGVQGSPL 153


>gi|205830473 sialic acid binding Ig-like lectin 11 isoform 2 [Homo
           sapiens]
          Length = 602

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 2   VQMEEVLNTGHPWGPSTQGPALGPVLAD-----LRQAELRAGKDKSPLCLGI 48
           V  + VL++ HPWGP T G  L  V A        +AE R G  +  L L +
Sbjct: 300 VLQDRVLSSSHPWGPRTLGLELRGVRAGDSGRYTCRAENRLGSQQQALDLSV 351


>gi|205830470 sialic acid binding Ig-like lectin 11 isoform 1 [Homo
           sapiens]
          Length = 698

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 2   VQMEEVLNTGHPWGPSTQGPALGPVLAD-----LRQAELRAGKDKSPLCLGI 48
           V  + VL++ HPWGP T G  L  V A        +AE R G  +  L L +
Sbjct: 300 VLQDRVLSSSHPWGPRTLGLELRGVRAGDSGRYTCRAENRLGSQQQALDLSV 351


>gi|7661858 Rho GTPase activating protein 11A isoform 1 [Homo
           sapiens]
          Length = 1023

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 11/109 (10%)

Query: 56  QPELHMSLLTDCDDSSRACSKAPTCDGALQSRLKCAFQNSSL-----GPLRTLCKQLHES 110
           QP  H   L    D++    K+ +CDGAL S ++ A ++SS+     GP         ES
Sbjct: 854 QPTGHK--LASLGDTASPLVKSVSCDGALSSCIESASKDSSVSCIKSGPKEQKSMSCEES 911

Query: 111 -VGQLPKVLRIELLVEALLTSKPPAHPSHLPLSWENTQPHVQLSLDTGK 158
            +G + K   +EL  ++ L  K   HP  +  S  +T  + Q  L  G+
Sbjct: 912 NIGAISK-SSMELPSKSFL--KMRKHPDSVNASLRSTTVYKQKILSDGQ 957


>gi|45580740 leukocyte specific transcript 1 isoform 4 [Homo
           sapiens]
          Length = 63

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 12/20 (60%), Positives = 14/20 (70%)

Query: 121 ELLVEALLTSKPPAHPSHLP 140
           EL + ALL + PP HP HLP
Sbjct: 30  ELTMPALLRTNPPEHPRHLP 49


>gi|45505161 leukocyte specific transcript 1 isoform 2 [Homo
           sapiens]
          Length = 75

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 12/20 (60%), Positives = 14/20 (70%)

Query: 121 ELLVEALLTSKPPAHPSHLP 140
           EL + ALL + PP HP HLP
Sbjct: 42  ELTMPALLRTNPPEHPRHLP 61


>gi|45505165 leukocyte specific transcript 1 isoform 1 [Homo
           sapiens]
          Length = 118

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 12/20 (60%), Positives = 14/20 (70%)

Query: 121 ELLVEALLTSKPPAHPSHLP 140
           EL + ALL + PP HP HLP
Sbjct: 85  ELTMPALLRTNPPEHPRHLP 104


>gi|161353481 zinc finger protein 187 isoform a [Homo sapiens]
          Length = 479

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 6/129 (4%)

Query: 70  SSRACSKAPTCDGALQSRLK-CAFQNSSLGPLRTLCKQLHESVGQLPKVLRIELLVEALL 128
           +S+   + P C    Q R +       +L  LR LC+Q  +      + +   L++E  L
Sbjct: 41  NSKGLGQEPLCKQFRQLRYEETTGPREALSRLRELCQQWLQPETHTKEQILELLVLEQFL 100

Query: 129 TSKPPAHPS----HLPLSWENTQPHVQ-LSLDTGKQDTGRSPGLPLRLAVFQEELALTAA 183
              P    +    H P S E+    ++ L LD G+      P  P +  +  EE+A    
Sbjct: 101 IILPKELQARVQEHHPESREDVVVVLEDLQLDLGETGQQVDPDQPKKQKILVEEMAPLKG 160

Query: 184 LGEQQGRDE 192
           + EQQ R E
Sbjct: 161 VQEQQVRHE 169


>gi|91754185 hypothetical protein LOC254268 [Homo sapiens]
          Length = 836

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 7/95 (7%)

Query: 59  LHMSLLTDCDDSSRACSKAPTCDGALQSRLKCAFQNSSLGPLRTLCKQLHESVGQL-PKV 117
           +H  LLT  +  +     +PT      S     FQ  S G  + +C++L E   QL  KV
Sbjct: 338 IHQELLTGIESEASLSKLSPTSQKGTSSSSSYIFQKISQG--KQMCQKLKEQTDQLKTKV 395

Query: 118 LRIELLVEALLTSKPPAHPSHLPLSWENTQPHVQL 152
                 ++       P H     L  E  Q H++L
Sbjct: 396 QEFSKRIK----QDSPYHLQDKKLVLEKLQGHLEL 426


>gi|171543825 gamma-glutamyltransferase 6 isoform a [Homo sapiens]
          Length = 493

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 32/108 (29%), Positives = 43/108 (39%), Gaps = 17/108 (15%)

Query: 17  STQGPALGPVLADLRQAELRAGKDKSPLCLGILPTSPTGQPELHMSLLTDCDDSSRACSK 76
           +T  P+ GP L  L +A LR+G      C   L T+ +  PE   S L   D S      
Sbjct: 310 TTPSPSAGPELLALLEAALRSGAPIPDPCPPFLQTAVS--PE--SSALAAVDSSGSVL-- 363

Query: 77  APTCDGALQSRLKCAFQNSSLGP-----LRTLCKQLHESVGQLPKVLR 119
                  L S L C+F ++ L P     L  L  +   S    P +LR
Sbjct: 364 ------LLTSSLNCSFGSAHLSPSTGVLLSNLVAKSTTSAWACPLILR 405


>gi|171543823 gamma-glutamyltransferase 6 isoform b [Homo sapiens]
          Length = 461

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 32/108 (29%), Positives = 43/108 (39%), Gaps = 17/108 (15%)

Query: 17  STQGPALGPVLADLRQAELRAGKDKSPLCLGILPTSPTGQPELHMSLLTDCDDSSRACSK 76
           +T  P+ GP L  L +A LR+G      C   L T+ +  PE   S L   D S      
Sbjct: 278 TTPSPSAGPELLALLEAALRSGAPIPDPCPPFLQTAVS--PE--SSALAAVDSSGSVL-- 331

Query: 77  APTCDGALQSRLKCAFQNSSLGP-----LRTLCKQLHESVGQLPKVLR 119
                  L S L C+F ++ L P     L  L  +   S    P +LR
Sbjct: 332 ------LLTSSLNCSFGSAHLSPSTGVLLSNLVAKSTTSAWACPLILR 373


>gi|161353483 zinc finger protein 187 isoform b [Homo sapiens]
          Length = 478

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 13/132 (9%)

Query: 70  SSRACSKAPTCDGALQSRLK-CAFQNSSLGPLRTLCKQLHESVGQLPKVLRIELLVEALL 128
           +S+   + P C    Q R +       +L  LR LC+Q  +      + +   L++E  L
Sbjct: 41  NSKGLGQEPLCKQFRQLRYEETTGPREALSRLRELCQQWLQPETHTKEQILELLVLEQFL 100

Query: 129 TSKPPAHPS----HLPLSWENTQ---PHVQLSL-DTGKQDTGRSPGLPLRLAVFQEELAL 180
              P    +    H P S E+       +QL L +TG+QD    P  P +  +  EE+A 
Sbjct: 101 IILPKELQARVQEHHPESREDVVVVLEDLQLDLGETGQQD----PDQPKKQKILVEEMAP 156

Query: 181 TAALGEQQGRDE 192
              + EQQ R E
Sbjct: 157 LKGVQEQQVRHE 168


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 11  GHPWGPSTQGPALGPVLADLRQAELRAGKDKSPLCLGILPTSPTGQP 57
           GHP GP T  PA+ P  A        A    +P   G  P   +GQP
Sbjct: 285 GHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGG--PAGVSGQP 329


>gi|122937223 NOBOX oogenesis homeobox [Homo sapiens]
          Length = 490

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 4/46 (8%)

Query: 16  PSTQGP----ALGPVLADLRQAELRAGKDKSPLCLGILPTSPTGQP 57
           P TQG      +G V    R      GK K P  +G+ PTS  G P
Sbjct: 178 PQTQGEDCSLPVGEVKIGKRSYSPAPGKQKKPNAMGLAPTSSPGAP 223


>gi|56549666 tyrosine kinase, non-receptor, 2 isoform 1 [Homo
           sapiens]
          Length = 1038

 Score = 28.5 bits (62), Expect = 7.0
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 133 PAHPSHLPLSWENTQPHVQLS-LDTGKQDTGRSPG 166
           P  P  +P+    T+PHVQLS    G+++T + PG
Sbjct: 737 PQVPPRVPIPPRPTRPHVQLSPAPPGEEETSQWPG 771


>gi|58331191 tyrosine kinase, non-receptor, 2 isoform 2 [Homo
           sapiens]
          Length = 1086

 Score = 28.5 bits (62), Expect = 7.0
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 133 PAHPSHLPLSWENTQPHVQLS-LDTGKQDTGRSPG 166
           P  P  +P+    T+PHVQLS    G+++T + PG
Sbjct: 815 PQVPPRVPIPPRPTRPHVQLSPAPPGEEETSQWPG 849


>gi|93352558 rhomboid, veinlet-like 6 isoform 2 [Homo sapiens]
          Length = 827

 Score = 28.5 bits (62), Expect = 7.0
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 41  KSPLCLGILPTSPTGQPELHMSLLTDCDDSSRACSKAPTCDGALQSRLKCAFQNSSLGPL 100
           K P+C     ++ TG   LHM    DC+   R C         + +R  C F +      
Sbjct: 544 KWPICTEQARSNHTGF--LHM----DCEIKGRPCCIGTKGSCEITTREYCEFMHGYFHEE 597

Query: 101 RTLCKQLH 108
            TLC Q+H
Sbjct: 598 ATLCSQVH 605


>gi|93352556 rhomboid, veinlet-like 6 isoform 1 [Homo sapiens]
          Length = 856

 Score = 28.5 bits (62), Expect = 7.0
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 41  KSPLCLGILPTSPTGQPELHMSLLTDCDDSSRACSKAPTCDGALQSRLKCAFQNSSLGPL 100
           K P+C     ++ TG   LHM    DC+   R C         + +R  C F +      
Sbjct: 573 KWPICTEQARSNHTGF--LHM----DCEIKGRPCCIGTKGSCEITTREYCEFMHGYFHEE 626

Query: 101 RTLCKQLH 108
            TLC Q+H
Sbjct: 627 ATLCSQVH 634


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.131    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,666,866
Number of Sequences: 37866
Number of extensions: 589001
Number of successful extensions: 1856
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1826
Number of HSP's gapped (non-prelim): 51
length of query: 284
length of database: 18,247,518
effective HSP length: 101
effective length of query: 183
effective length of database: 14,423,052
effective search space: 2639418516
effective search space used: 2639418516
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.