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Search of human proteins with 239753274
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753274 PREDICTED: hypothetical protein [Homo sapiens]
(263 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753274 PREDICTED: hypothetical protein [Homo sapiens] 539 e-153
gi|239747844 PREDICTED: hypothetical protein XP_002346445 [Homo ... 536 e-153
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 46 4e-05
gi|13994287 BTE-binding protein 4 [Homo sapiens] 43 3e-04
gi|48762934 alpha 2 type I collagen [Homo sapiens] 43 3e-04
gi|169167405 PREDICTED: hypothetical protein [Homo sapiens] 42 7e-04
gi|169164474 PREDICTED: hypothetical protein [Homo sapiens] 41 0.001
gi|239747958 PREDICTED: hypothetical protein isoform 4 [Homo sap... 41 0.001
gi|239741853 PREDICTED: hypothetical protein isoform 2 [Homo sap... 41 0.001
gi|113423529 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|4758392 forkhead box D1 [Homo sapiens] 39 0.005
gi|239755739 PREDICTED: hypothetical protein [Homo sapiens] 39 0.006
gi|239754911 PREDICTED: hypothetical protein [Homo sapiens] 39 0.006
gi|239749451 PREDICTED: hypothetical protein [Homo sapiens] 39 0.006
gi|239743581 PREDICTED: hypothetical protein [Homo sapiens] 39 0.006
gi|42821110 hypothetical protein LOC340602 [Homo sapiens] 39 0.006
gi|239748099 PREDICTED: hypothetical protein [Homo sapiens] 38 0.008
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 38 0.008
gi|239756517 PREDICTED: hypothetical protein [Homo sapiens] 37 0.013
gi|239755142 PREDICTED: hypothetical protein [Homo sapiens] 37 0.013
gi|239753353 PREDICTED: hypothetical protein [Homo sapiens] 37 0.013
gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo ... 37 0.013
gi|239747921 PREDICTED: hypothetical protein XP_002346480 [Homo ... 37 0.013
gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo ... 37 0.013
gi|239741815 PREDICTED: hypothetical protein XP_002342320 [Homo ... 37 0.013
gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo ... 37 0.018
gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo ... 37 0.018
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 37 0.018
gi|39812496 Sp8 transcription factor isoform 1 [Homo sapiens] 37 0.023
gi|39812501 Sp8 transcription factor isoform 2 [Homo sapiens] 37 0.023
>gi|239753274 PREDICTED: hypothetical protein [Homo sapiens]
Length = 263
Score = 539 bits (1388), Expect = e-153
Identities = 263/263 (100%), Positives = 263/263 (100%)
Query: 1 MLGLWRCEVAHRPACVAGTGQPSPPSPERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGF 60
MLGLWRCEVAHRPACVAGTGQPSPPSPERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGF
Sbjct: 1 MLGLWRCEVAHRPACVAGTGQPSPPSPERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGF 60
Query: 61 CAASGGSRLGDQRQEVRAAAGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPP 120
CAASGGSRLGDQRQEVRAAAGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPP
Sbjct: 61 CAASGGSRLGDQRQEVRAAAGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPP 120
Query: 121 EDSAGPFLFLGREHVRGGARGGHGHCGAQGRRRRACRTSLRLGASRRLAWSPRTSPGLRG 180
EDSAGPFLFLGREHVRGGARGGHGHCGAQGRRRRACRTSLRLGASRRLAWSPRTSPGLRG
Sbjct: 121 EDSAGPFLFLGREHVRGGARGGHGHCGAQGRRRRACRTSLRLGASRRLAWSPRTSPGLRG 180
Query: 181 TSPAQAWPCLLQASESFSAFREPQRGTFPANAAAKESLGGVILTAFLASAGEQLGDTADA 240
TSPAQAWPCLLQASESFSAFREPQRGTFPANAAAKESLGGVILTAFLASAGEQLGDTADA
Sbjct: 181 TSPAQAWPCLLQASESFSAFREPQRGTFPANAAAKESLGGVILTAFLASAGEQLGDTADA 240
Query: 241 RASSPTTPRSAPSSDSFPRSAQK 263
RASSPTTPRSAPSSDSFPRSAQK
Sbjct: 241 RASSPTTPRSAPSSDSFPRSAQK 263
>gi|239747844 PREDICTED: hypothetical protein XP_002346445 [Homo
sapiens]
Length = 263
Score = 536 bits (1382), Expect = e-153
Identities = 262/263 (99%), Positives = 262/263 (99%)
Query: 1 MLGLWRCEVAHRPACVAGTGQPSPPSPERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGF 60
MLGLWRCEVAHRPACVAGTGQPSPPSPERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGF
Sbjct: 1 MLGLWRCEVAHRPACVAGTGQPSPPSPERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGF 60
Query: 61 CAASGGSRLGDQRQEVRAAAGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPP 120
CAASGGSRLGDQRQEVRAAAGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPP
Sbjct: 61 CAASGGSRLGDQRQEVRAAAGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPP 120
Query: 121 EDSAGPFLFLGREHVRGGARGGHGHCGAQGRRRRACRTSLRLGASRRLAWSPRTSPGLRG 180
EDSAGPFLFL REHVRGGARGGHGHCGAQGRRRRACRTSLRLGASRRLAWSPRTSPGLRG
Sbjct: 121 EDSAGPFLFLSREHVRGGARGGHGHCGAQGRRRRACRTSLRLGASRRLAWSPRTSPGLRG 180
Query: 181 TSPAQAWPCLLQASESFSAFREPQRGTFPANAAAKESLGGVILTAFLASAGEQLGDTADA 240
TSPAQAWPCLLQASESFSAFREPQRGTFPANAAAKESLGGVILTAFLASAGEQLGDTADA
Sbjct: 181 TSPAQAWPCLLQASESFSAFREPQRGTFPANAAAKESLGGVILTAFLASAGEQLGDTADA 240
Query: 241 RASSPTTPRSAPSSDSFPRSAQK 263
RASSPTTPRSAPSSDSFPRSAQK
Sbjct: 241 RASSPTTPRSAPSSDSFPRSAQK 263
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 45.8 bits (107), Expect = 4e-05
Identities = 46/141 (32%), Positives = 57/141 (40%), Gaps = 23/141 (16%)
Query: 20 GQPSPPSPERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGFCAASGGSRLGDQRQEVRAA 79
GQP PP P +A G ++ + P G PG NG + G R G+ + A
Sbjct: 330 GQPGPPGPPGTAGFPGSPGAKGEVGPAGSPG------SNG----APGQR-GEPGPQGHAG 378
Query: 80 AGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPPEDSAGPFLFLGREHVRGGA 139
A PG G S PA P APGL+ +R PP GP G +RGGA
Sbjct: 379 AQGPPGPPG---INGSPGGKGEMGPAGIPGAPGLMGARGPP----GPAGANGAPGLRGGA 431
Query: 140 -----RGGHGHCGAQGRRRRA 155
G G G +G R A
Sbjct: 432 GEPGKNGAKGEPGPRGERGEA 452
Score = 44.3 bits (103), Expect = 1e-04
Identities = 56/194 (28%), Positives = 64/194 (32%), Gaps = 22/194 (11%)
Query: 13 PACVAGTGQPSPPSPERSACGCGLHLSRRKSAPRGGPGVL--PGTKLNGFCAASGGSRLG 70
P G G P P S G S PRG PGV+ PG K N G R G
Sbjct: 539 PGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGG 598
Query: 71 DQRQEVRAAAGQ--VPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPPEDSAGPFL 128
+ G+ G G T P P GL + PP ++ P
Sbjct: 599 PGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKP-- 656
Query: 129 FLGREHVRG-----GARGGHGHCGAQGRR---RRACRTSLRLGA------SRRLAWSPRT 174
G +G GA GG G GA G R A LR GA + A P
Sbjct: 657 --GEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPG 714
Query: 175 SPGLRGTSPAQAWP 188
PG GT Q P
Sbjct: 715 PPGAAGTPGLQGMP 728
Score = 33.5 bits (75), Expect = 0.19
Identities = 44/154 (28%), Positives = 49/154 (31%), Gaps = 24/154 (15%)
Query: 13 PACVAGTGQPSPPSPERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGFCAASGGSRLGDQ 72
P G P PP P A G R +S P GP PG + G R
Sbjct: 1040 PGAPGAPGHPGPPGPVGPAGKSG---DRGESGP-AGPAGAPGPAGSRGAPGPQGPRGDKG 1095
Query: 73 RQEVRAAAG--------------QVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRC 118
R AAG PG AG + A S A P P PG +
Sbjct: 1096 ETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSG 1155
Query: 119 PPEDSAGPFLFLGREHVRG--GARGGHGHCGAQG 150
P GP G RG G+ G GH G G
Sbjct: 1156 HP----GPIGPPGPRGNRGERGSEGSPGHPGQPG 1185
Score = 31.6 bits (70), Expect = 0.74
Identities = 40/142 (28%), Positives = 50/142 (35%), Gaps = 11/142 (7%)
Query: 13 PACVAGTGQPSPPSPERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGFCAASGGSRLGDQ 72
P G G PP P +A GL + RGG G PG K + G+
Sbjct: 701 PGPEGGKGAAGPPGPPGAAGTPGL---QGMPGERGGLG-SPGPKGDKGEPGGPGADGVPG 756
Query: 73 RQEVRAAAGQV--PGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPPEDSAGPFLFL 130
+ R G + PG AG + A P +PG PP GP F
Sbjct: 757 KDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPP----GPAGFP 812
Query: 131 GREHVRGGARGGHGHCGAQGRR 152
G + G GG G GA G +
Sbjct: 813 GAPG-QNGEPGGKGERGAPGEK 833
Score = 30.4 bits (67), Expect = 1.6
Identities = 31/106 (29%), Positives = 38/106 (35%), Gaps = 5/106 (4%)
Query: 47 GGPGVLPGTKLNGFCAASGGSRLGDQRQEVRAAAGQVPGEAGARRARSSAQLASRTAPAA 106
G PG+ L G A G +G + +PG AGAR + + P
Sbjct: 279 GAPGLKGENGLPGENGAPGP--MGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPG 336
Query: 107 PPCAPGLLASRCPPEDSAGPFLFLGREHVRG--GARGGHGHCGAQG 150
PP G S + GP G G G G GH GAQG
Sbjct: 337 PPGTAGFPGSP-GAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQG 381
>gi|13994287 BTE-binding protein 4 [Homo sapiens]
Length = 252
Score = 42.7 bits (99), Expect = 3e-04
Identities = 61/220 (27%), Positives = 72/220 (32%), Gaps = 44/220 (20%)
Query: 10 AHRPACVAGTGQPSPPSPERSACGCGLHLSRRKSAP------RGGPGVLPGTKLNGFCAA 63
A R A GT P PP P S G G + A RGGPG PG
Sbjct: 46 ARREAASPGTPGPPPPPPAASGPGPGAAAAPHLLAASILADLRGGPGAAPG--------- 96
Query: 64 SGGSRLGDQRQEVRAAAGQVPGEAGARRARSSAQLASRTAPAAPPCAPGL-----LASRC 118
G S ++G+ PG A SA S P P CA L S
Sbjct: 97 -GASPASSSSAASSPSSGRAPGAA------PSAAAKSHRCPF-PDCAKAYYKSSHLKSHL 148
Query: 119 PPEDSAGPFLF----LGREHVRGGARGGHGHCGAQGRRRRACRT-SLRLGASRRLAWSPR 173
PF ++ R H H G +R +C S R S LA R
Sbjct: 149 RTHTGERPFACDWQGCDKKFARSDELARH-HRTHTGEKRFSCPLCSKRFTRSDHLAKHAR 207
Query: 174 TSPGL----------RGTSPAQAWPCLLQASESFSAFREP 203
PG R TSP+ + PC L S + S P
Sbjct: 208 RHPGFHPDLLRRPGARSTSPSDSLPCSLAGSPAPSPAPSP 247
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 42.7 bits (99), Expect = 3e-04
Identities = 46/152 (30%), Positives = 59/152 (38%), Gaps = 20/152 (13%)
Query: 16 VAGTGQPSPPSPERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGFCAASGGS-------- 67
+ G PP P+ + G+ + + P GP LPG + G GG
Sbjct: 606 IGSRGPSGPPGPDGNKGEPGVVGAVGTAGP-SGPSGLPGER--GAAGIPGGKGEKGEPGL 662
Query: 68 --RLGDQ-RQEVRAAAGQV--PGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCP--P 120
+G+ R R A G V PG AGA R A A PA P +PG P P
Sbjct: 663 RGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGP 722
Query: 121 EDSAGPFLFLGREHVRG--GARGGHGHCGAQG 150
AGP G+ +G GA+G G G G
Sbjct: 723 NGFAGPAGAAGQPGAKGERGAKGPKGENGVVG 754
Score = 30.0 bits (66), Expect = 2.1
Identities = 45/182 (24%), Positives = 56/182 (30%), Gaps = 27/182 (14%)
Query: 20 GQPSPPSPERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGFCAASGGSRLGDQRQEVRAA 79
G PP P G + + P G PG+ G A G R G
Sbjct: 367 GPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADG--RAG--------- 415
Query: 80 AGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASR--------CPPEDSAGPFLFLG 131
V G G+R A A + A P PGL+ R P GP G
Sbjct: 416 ---VMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPG 472
Query: 132 REHVRG-----GARGGHGHCGAQGRRRRACRTSLRLGASRRLAWSPRTSPGLRGTSPAQA 186
+ G GARG G+ G G + R +PG G + AQ
Sbjct: 473 IDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGAQG 532
Query: 187 WP 188
P
Sbjct: 533 PP 534
Score = 29.3 bits (64), Expect = 3.7
Identities = 41/136 (30%), Positives = 44/136 (32%), Gaps = 27/136 (19%)
Query: 20 GQPSPPSPERSACGCGLHLSRRKSAPRGGPG----VLPGTKLNGFCAASGGSRLGDQRQE 75
G P P G + PRG PG V P NGF +G
Sbjct: 682 GAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGP-NGFAGPAG---------- 730
Query: 76 VRAAAGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPPEDSAGPFLFLGREHV 135
AAGQ PG G R A+ P P A G PP GP G
Sbjct: 731 ---AAGQ-PGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPP----GPAGSRG---- 778
Query: 136 RGGARGGHGHCGAQGR 151
GG G G GA GR
Sbjct: 779 DGGPPGMTGFPGAAGR 794
Score = 28.5 bits (62), Expect = 6.2
Identities = 34/142 (23%), Positives = 44/142 (30%), Gaps = 6/142 (4%)
Query: 13 PACVAGTGQPSPPSPERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGFCAASGGSRLGDQ 72
P + G P P G H +R ++ P G G G G GD+
Sbjct: 951 PGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPRGPSGPQG--IRGDK 1008
Query: 73 RQEVRAAAGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCP--PEDSAGPFLFL 130
+ +PG G + +A P + G R P P AG
Sbjct: 1009 GEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDGRT 1068
Query: 131 GREHVRG--GARGGHGHCGAQG 150
G G G RG GH G G
Sbjct: 1069 GHPGTVGPAGIRGPQGHQGPAG 1090
>gi|169167405 PREDICTED: hypothetical protein [Homo sapiens]
Length = 141
Score = 41.6 bits (96), Expect = 7e-04
Identities = 46/145 (31%), Positives = 61/145 (42%), Gaps = 26/145 (17%)
Query: 17 AGTGQPSPPSPERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGFCAASGGSRLGDQR--Q 74
AG + P P +A +H RR SAPRGG PG G GG+R QR +
Sbjct: 4 AGRAREETPGPASTASRTRVHQQRRGSAPRGGESPDPGA---GAGDRRGGARQRPQRLSE 60
Query: 75 EVRAAAGQVPGEAGAR------RARSSAQLASRTAPAA------PPCAPGLLASRCPPED 122
+ A VPG A R S+ + R +PAA P C+ LA+R P+
Sbjct: 61 PRQPQAVPVPGAASYRLGLPPTLTSLSSSVPGRASPAARLRNRRPGCS---LATRLRPDG 117
Query: 123 ---SAGPFLFLGREHVRGGARGGHG 144
++GP R R G + G G
Sbjct: 118 VWATSGPAPLTPR---RAGDQEGRG 139
>gi|169164474 PREDICTED: hypothetical protein [Homo sapiens]
Length = 259
Score = 40.8 bits (94), Expect = 0.001
Identities = 40/119 (33%), Positives = 49/119 (41%), Gaps = 14/119 (11%)
Query: 27 PERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGFCA-ASGGSRLG---DQRQEVRAAAGQ 82
P RS CG G S R GG T+ G CA A+ G LG A AG
Sbjct: 63 PARSVCGWGGARSGRPGGGAGGRRCARATRGGGGCARATRGGDLGWAVALPHRPSALAGP 122
Query: 83 VPGEAGARRARSSA-QLASRTAPAAPPCAPGLLASR----CPPEDSAGPFLFLGREHVR 136
+P + R+AR +L +A A P PG R C P D L+ GRE +R
Sbjct: 123 LPSQTAERQARPLVRELGRGSAAAGCPSLPGATTPRPRRCCVPRD-----LWGGRESLR 176
>gi|239747958 PREDICTED: hypothetical protein isoform 4 [Homo
sapiens]
Length = 259
Score = 40.8 bits (94), Expect = 0.001
Identities = 40/119 (33%), Positives = 49/119 (41%), Gaps = 14/119 (11%)
Query: 27 PERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGFCA-ASGGSRLG---DQRQEVRAAAGQ 82
P RS CG G S R GG T+ G CA A+ G LG A AG
Sbjct: 63 PARSVCGWGGARSGRPGGGAGGRRCARATRGGGGCARATRGGDLGWAVALPHRPSALAGP 122
Query: 83 VPGEAGARRARSSA-QLASRTAPAAPPCAPGLLASR----CPPEDSAGPFLFLGREHVR 136
+P + R+AR +L +A A P PG R C P D L+ GRE +R
Sbjct: 123 LPSQTAERQARPLVRELGRGSAAAGCPSLPGATTPRPRRCCVPRD-----LWGGRESLR 176
>gi|239741853 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 259
Score = 40.8 bits (94), Expect = 0.001
Identities = 40/119 (33%), Positives = 49/119 (41%), Gaps = 14/119 (11%)
Query: 27 PERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGFCA-ASGGSRLG---DQRQEVRAAAGQ 82
P RS CG G S R GG T+ G CA A+ G LG A AG
Sbjct: 63 PARSVCGWGGARSGRPGGGAGGRRCARATRGGGGCARATRGGDLGWAVALPHRPSALAGP 122
Query: 83 VPGEAGARRARSSA-QLASRTAPAAPPCAPGLLASR----CPPEDSAGPFLFLGREHVR 136
+P + R+AR +L +A A P PG R C P D L+ GRE +R
Sbjct: 123 LPSQTAERQARPLVRELGRGSAAAGCPSLPGATTPRPRRCCVPRD-----LWGGRESLR 176
>gi|113423529 PREDICTED: hypothetical protein [Homo sapiens]
Length = 276
Score = 40.0 bits (92), Expect = 0.002
Identities = 39/132 (29%), Positives = 49/132 (37%), Gaps = 38/132 (28%)
Query: 65 GGSRLGDQRQEVRAAAGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPPEDSA 124
GG R G+ R+E G G R++R A A R P PG
Sbjct: 46 GGRRGGEGRREA--------GGGGGRKSREGAACARRLIRCPSPAPPG------------ 85
Query: 125 GPFLFLGREHVRGGARGGHGHCGAQGRRRRACRTSLRLGASRRLAWSPRTSP-------- 176
G + G + G G G G RR CR RL +SR WS + +P
Sbjct: 86 ------GAGGLGEGRQDGGGEVGRAG--RRCCRRHRRLRSSR--LWSFKLTPPGRSCAGA 135
Query: 177 GLRGTSPAQAWP 188
G RG S + WP
Sbjct: 136 GSRGESKSFPWP 147
>gi|4758392 forkhead box D1 [Homo sapiens]
Length = 465
Score = 38.9 bits (89), Expect = 0.005
Identities = 33/124 (26%), Positives = 46/124 (37%), Gaps = 8/124 (6%)
Query: 22 PSPPSPERSACGCGLHLSRRKSAPRGG--PGVLPGTKLNGFCAASGGSRLGDQRQEVRA- 78
P PP P +A + P G PG LP + G S L + +
Sbjct: 310 PPPPPPHGAAAELARTAFGYRPHPLGAALPGPLPASAAKA--GGPGASALARSPFSIESI 367
Query: 79 ---AAGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPPEDSAGPFLFLGREHV 135
+ G A A +A ++AQ + +P A P APG C + + GP L R V
Sbjct: 368 IGGSLGPAAAAAAAAQAAAAAQASPSPSPVAAPPAPGSSGGGCAAQAAVGPAAALTRSLV 427
Query: 136 RGGA 139
A
Sbjct: 428 AAAA 431
>gi|239755739 PREDICTED: hypothetical protein [Homo sapiens]
Length = 202
Score = 38.5 bits (88), Expect = 0.006
Identities = 53/171 (30%), Positives = 66/171 (38%), Gaps = 29/171 (16%)
Query: 12 RPACVAGTGQPSPPSPERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGFCAASGGSRLGD 71
R AG GQ PP P R + ++ ++ GG P G AA GG+R G
Sbjct: 35 RAGLAAGKGQ-RPPGPGR------VRAAQARARRGGGARERPAEGARGPRAARGGARAGP 87
Query: 72 QRQEVRAAAGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRC--PPEDSAGPFLF 129
Q +RAA R R+ AQ AA CA +C P PF
Sbjct: 88 DAQ-LRAA----------RTHRARAQTPQLRREAA--CAGSFFFRKCRQSPRSHGQPFPQ 134
Query: 130 LGREHVRGGARGGHGHCGAQGRRRRACRTSLRLGASRRLAWSPRTSPGLRG 180
L R H + +G G GRR S R A+ RT+PGLRG
Sbjct: 135 L-RSHWQAPRQGWPAQEGG-GRR-----PSRREEAAALAGGGKRTAPGLRG 178
>gi|239754911 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 38.5 bits (88), Expect = 0.006
Identities = 47/164 (28%), Positives = 60/164 (36%), Gaps = 25/164 (15%)
Query: 25 PSPERSACGCGL---HLSRRKSAP--RGGPGVLPGTKLNGFCAASGGSRLGDQRQEVRAA 79
P P +A C L L +SAP R GP LP + C R +
Sbjct: 121 PQPHGAASSCSLPRCRLCPERSAPPRRRGPPPLPTS-----C------------HWARRS 163
Query: 80 AGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPPEDSAGPFLFLGREHV--RG 137
G A + R A+ AP+ P +P SRCPP A FL G+
Sbjct: 164 CALRRGGAASWRRGPGTPAAAPEAPSPPDHSPSPWTSRCPPCPHASSFLPPGQSRCLRLP 223
Query: 138 GARGGHGHCGAQGR-RRRACRTSLRLGASRRLAWSPRTSPGLRG 180
GG G QGR + +A + +R R P PG RG
Sbjct: 224 LPGGGGGQRALQGRLKTQAGKRGVRKRGGWRERERPSADPGERG 267
>gi|239749451 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 38.5 bits (88), Expect = 0.006
Identities = 47/164 (28%), Positives = 60/164 (36%), Gaps = 25/164 (15%)
Query: 25 PSPERSACGCGL---HLSRRKSAP--RGGPGVLPGTKLNGFCAASGGSRLGDQRQEVRAA 79
P P +A C L L +SAP R GP LP + C R +
Sbjct: 121 PQPHGAASSCSLPRCRLCPERSAPPRRRGPPPLPTS-----C------------HWARRS 163
Query: 80 AGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPPEDSAGPFLFLGREHV--RG 137
G A + R A+ AP+ P +P SRCPP A FL G+
Sbjct: 164 CALRRGGAASWRRGPGTPAAAPEAPSPPDHSPSPWTSRCPPCPHASSFLPPGQSRCLRLP 223
Query: 138 GARGGHGHCGAQGR-RRRACRTSLRLGASRRLAWSPRTSPGLRG 180
GG G QGR + +A + +R R P PG RG
Sbjct: 224 LPGGGGGQRALQGRLKTQAGKRGVRKRGGWRERERPSADPGERG 267
>gi|239743581 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 38.5 bits (88), Expect = 0.006
Identities = 47/164 (28%), Positives = 60/164 (36%), Gaps = 25/164 (15%)
Query: 25 PSPERSACGCGL---HLSRRKSAP--RGGPGVLPGTKLNGFCAASGGSRLGDQRQEVRAA 79
P P +A C L L +SAP R GP LP + C R +
Sbjct: 121 PQPHGAASSCSLPRCRLCPERSAPPRRRGPPPLPTS-----C------------HWARRS 163
Query: 80 AGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPPEDSAGPFLFLGREHV--RG 137
G A + R A+ AP+ P +P SRCPP A FL G+
Sbjct: 164 CALRRGGAASWRRGPGTPAAAPEAPSPPDHSPSPWTSRCPPCPHASSFLPPGQSRCLRLP 223
Query: 138 GARGGHGHCGAQGR-RRRACRTSLRLGASRRLAWSPRTSPGLRG 180
GG G QGR + +A + +R R P PG RG
Sbjct: 224 LPGGGGGQRALQGRLKTQAGKRGVRKRGGWRERERPSADPGERG 267
>gi|42821110 hypothetical protein LOC340602 [Homo sapiens]
Length = 503
Score = 38.5 bits (88), Expect = 0.006
Identities = 45/150 (30%), Positives = 57/150 (38%), Gaps = 26/150 (17%)
Query: 19 TGQPSPPSPERSACGCGLHLSRRKSAPRGGPGV-------LPGTKLNGFCAASGGSRLGD 71
T QP P P R+ HL + +P PG +PG G +A G +R G
Sbjct: 239 TAQPGPAFPHRAT-----HLDPARLSPESAPGPARRGRASVPGPARRGCDSAPGPARRGR 293
Query: 72 QRQEVRAAAGQVPGEAGARRARSSA---QLASRTAPA-----APPCAPGL-LASRCPPED 122
V A G+ ARR R SA L RTA + + PG L SR +
Sbjct: 294 DSAPVSAPRGRDSAPGSARRGRDSAPGPALRVRTARSDAGHRSTSTTPGTGLRSRSTQQR 353
Query: 123 SAGPFLFLGREHVRGGARGGHGHCGAQGRR 152
SA L R + G A + CG R
Sbjct: 354 SA----LLSRRSLSGSA-DENPSCGTGSER 378
Score = 28.5 bits (62), Expect = 6.2
Identities = 60/245 (24%), Positives = 82/245 (33%), Gaps = 51/245 (20%)
Query: 57 LNGFCAASGGSRLGDQRQEVRAAAGQVPGEAG---------------ARRARSSAQLASR 101
LN A + G G Q+ A+ V +A A A S+A +
Sbjct: 22 LNNETALASGDACGTGNQDPAASVTTVSSQASPSGGAALSSSTAGSSAAAATSAAIFITD 81
Query: 102 TAPAAPPCAPGLLASRCPPEDSAGPFLFLGREHVRGGARGGHGHCGAQG----------- 150
A P A L +D P G GG++ G A G
Sbjct: 82 EASGLPIIAAVLTERHSDRQDCRSPHEVFGCVVPEGGSQAAVGPQKATGHADEHLAQTKS 141
Query: 151 -----RRRRACRTS---LRLGASRRLAWS--PRTSPGLRGTS-----------PAQAWPC 189
RR++ CR + RRL P +SPG R +S Q P
Sbjct: 142 PGNSRRRKQPCRNQAAPAQKPPGRRLFPEPLPPSSPGFRPSSYPCSGASTSSQATQPGPA 201
Query: 190 LL-QASESFSAFREPQRGTFPANAAAKESLG-GVILTAFLASAGEQLGDTADARASSPTT 247
LL ASE+ A R R T A+A + + G G ++ A G A + +
Sbjct: 202 LLSHASEARPATR--SRITLVASALRRRASGPGPVIRGCTAQPGPAFPHRATHLDPARLS 259
Query: 248 PRSAP 252
P SAP
Sbjct: 260 PESAP 264
>gi|239748099 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 38.1 bits (87), Expect = 0.008
Identities = 55/181 (30%), Positives = 67/181 (37%), Gaps = 33/181 (18%)
Query: 76 VRAAAGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPPEDSAGPFLFLGREHV 135
V +AG GE G R + A+RT PA G+L GP +
Sbjct: 72 VGKSAGAAAGEEGGARLQ-----ATRTWPA------GIL--------EGGP-----QVAA 107
Query: 136 RGGARGGHGHCGAQGRRRRACRTSLRLGASRRLAWSPRTSPGLRGTSPAQAWPCLLQASE 195
RGG RG G G G RR A + R GASR LA P R W +A E
Sbjct: 108 RGGGRGWEG--GGLGARR-AVTAARRGGASRPLAGEPWREAARRRPQQCPQWG---RARE 161
Query: 196 SFSAFREPQRGTFPANAAAKESLGGVILTAFLASAGEQLGDTADARASSPTTPRSAPSSD 255
S SA R + A + G L A +G + ARA P P P+
Sbjct: 162 SRSAALASPRVSNAPTTPASRNPG---LRAQERQSGRRAAGGGGARAEPPRVPPCRPAGC 218
Query: 256 S 256
S
Sbjct: 219 S 219
Score = 29.6 bits (65), Expect = 2.8
Identities = 29/108 (26%), Positives = 41/108 (37%), Gaps = 7/108 (6%)
Query: 5 WRCEVAHRPACVAGTGQPSPPSPERSACGCGLHLSRRKSAPRG-GPGVLPGTKLNGFCAA 63
WR RP G+ RSA +S + P PG+ + +G AA
Sbjct: 142 WREAARRRPQQCPQWGRARE---SRSAALASPRVSNAPTTPASRNPGLRAQERQSGRRAA 198
Query: 64 SGGSRLGDQRQEVRAAAGQVPGEAGARRARSSAQLASRTAPAAPPCAP 111
GG G + + R + G +G R+R +A RT PP P
Sbjct: 199 GGG---GARAEPPRVPPCRPAGCSGGNRSRRAAGAGPRTTRRKPPPRP 243
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 38.1 bits (87), Expect = 0.008
Identities = 59/247 (23%), Positives = 85/247 (34%), Gaps = 48/247 (19%)
Query: 20 GQPSPPSPERSACGCGLHLSR----------RKSAPRGGPGVLPGTKLNGFCAASGGSRL 69
G+P+P P + GL L R R+ +P P P AA+ G
Sbjct: 464 GEPAPAPPAADSRWGGLDLRRKILTQRRERYRQRSPSPAPAPAP--------AAAAGPPT 515
Query: 70 GDQRQEVRAAAGQVPGEAGARRARSSAQLASRTAPAAP-PCAPGLLASRCPPEDSAGPFL 128
+ + R +G+ A+ +A +S T PA P P +P + G
Sbjct: 516 RKKSRRERKRSGE---------AKEAASSSSGTQPAPPAPASPWDSKKHRSRDRKPG--- 563
Query: 129 FLGREHVRGGARG-GHGHCGAQGRRRRACRTSLRLGASRRLAWSPRTSPGLRGTSPAQAW 187
H AR ++ RRR+ T R G SRR + R SP A
Sbjct: 564 ----SHASSSARRRSRSRSRSRSTRRRSRSTDRRRGGSRRSRSREKRRRRRRSASPPPA- 618
Query: 188 PCLLQASESFSAFREPQRGTFPANAAAKESLGGVILTAFLASAGEQLGDTADARASSPTT 247
S S S+ RE RG +K+ S GE+ +A +P
Sbjct: 619 -----TSSSSSSRRERHRGKHRDGGGSKKK------KKRSRSRGEKRSGDGSEKAPAPAP 667
Query: 248 PRSAPSS 254
P S +S
Sbjct: 668 PPSGSTS 674
>gi|239756517 PREDICTED: hypothetical protein [Homo sapiens]
Length = 316
Score = 37.4 bits (85), Expect = 0.013
Identities = 54/170 (31%), Positives = 62/170 (36%), Gaps = 23/170 (13%)
Query: 98 LASRTAPAAPPCAPGLLASRCPPEDSAGPFLFLGREHVRGGARGGHGHCGAQGRRRRACR 157
L+S + P +L + AGP R RGGA GG G C +GR R C
Sbjct: 56 LSSPSLGGGPAAGSAILRAGSRSPRGAGPGAAGPRAAGRGGAGGG-GRCCTRGRGRFPCA 114
Query: 158 TSLRLGASRRLAWSP---RTS-------PGLRG-TSPAQAWPCLLQASESFSAFREPQRG 206
S GA R SP R+S P LRG + +A P LL R
Sbjct: 115 GSGGRGARSRGCHSPSCCRSSSCAWHRWPQLRGREADPRASPALL------ICIAPRPRP 168
Query: 207 TFPA----NAAAKESLGGVILTAFLASAGEQLGDTADARASSPTTPRSAP 252
PA A A L L SAG RAS PT PR P
Sbjct: 169 ALPAALHIGARATAGLAAKRAQPQLCSAGTAARGRR-TRASPPTPPRPRP 217
>gi|239755142 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 37.4 bits (85), Expect = 0.013
Identities = 38/131 (29%), Positives = 52/131 (39%), Gaps = 21/131 (16%)
Query: 3 GLWRCEVAHRPACVAGTGQPSPPSPERSACGCGLHLSRRKSAPR-----GGPGVLPGTKL 57
G W + P A P+ R +C L +RR SA R GG G L
Sbjct: 75 GGWSAALGSLPPPPAAACTALKPATRRGSCSAPLGPARRCSARRPRLHQGGAGRL----- 129
Query: 58 NGFCAASGGSRLGDQRQEVRAAAGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASR 117
A+GG+ G++R R A + + AR +A R+A PP G+ A R
Sbjct: 130 -----AAGGAEAGERRSPNRGATSSL-----SPIARGAADTGVRSAAEDPPRRDGIAADR 179
Query: 118 CPPEDSAGPFL 128
P + S G L
Sbjct: 180 -PWQGSWGRLL 189
>gi|239753353 PREDICTED: hypothetical protein [Homo sapiens]
Length = 448
Score = 37.4 bits (85), Expect = 0.013
Identities = 47/163 (28%), Positives = 63/163 (38%), Gaps = 10/163 (6%)
Query: 65 GGSRLGDQRQEVRAAAGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPPEDSA 124
GG R G + + AA+ PGE R+ SA+ ASR A+ P L R
Sbjct: 25 GGGRAGGTGRSITAASELSPGERARRKKPQSAREASRAWEASISRDPALSPGR--GRRQT 82
Query: 125 GPFLFLGREHVRGGARGGHG-HCGAQGRRRRACRTSLRLGASRRLAWSPRTSPGLRGT-- 181
G GR+ VRGGAR ++ R R L G+ R A S S GL
Sbjct: 83 GSPGGEGRQ-VRGGARNSRDPGLRSEMRPFREAFAKLLSGSPERGALSGEFSLGLENRPR 141
Query: 182 ----SPAQAWPCLLQASESFSAFREPQRGTFPANAAAKESLGG 220
+PA ++ S ++ +RG P A L G
Sbjct: 142 AHRGAPAAVMVVVVMRLRGLSGVQQRRRGLQPELPAPLPPLPG 184
>gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo
sapiens]
Length = 304
Score = 37.4 bits (85), Expect = 0.013
Identities = 54/170 (31%), Positives = 62/170 (36%), Gaps = 23/170 (13%)
Query: 98 LASRTAPAAPPCAPGLLASRCPPEDSAGPFLFLGREHVRGGARGGHGHCGAQGRRRRACR 157
L+S + P +L + AGP R RGGA GG G C +GR R C
Sbjct: 56 LSSPSLGGGPAAGSAILRAGSRSPRGAGPGAAGPRAAGRGGAGGG-GRCCTRGRGRFPCA 114
Query: 158 TSLRLGASRRLAWSP---RTS-------PGLRG-TSPAQAWPCLLQASESFSAFREPQRG 206
S GA R SP R+S P LRG + +A P LL R
Sbjct: 115 GSGGRGARSRGCHSPSCCRSSSCAWHRWPQLRGREAEPRASPALL------ICIAPRPRP 168
Query: 207 TFPA----NAAAKESLGGVILTAFLASAGEQLGDTADARASSPTTPRSAP 252
PA A A L L SAG RAS PT PR P
Sbjct: 169 ALPAALHIGARATAGLAAKRAQPQLCSAGTAARGRR-TRASPPTPPRPRP 217
>gi|239747921 PREDICTED: hypothetical protein XP_002346480 [Homo
sapiens]
Length = 448
Score = 37.4 bits (85), Expect = 0.013
Identities = 47/163 (28%), Positives = 63/163 (38%), Gaps = 10/163 (6%)
Query: 65 GGSRLGDQRQEVRAAAGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPPEDSA 124
GG R G + + AA+ PGE R+ SA+ ASR A+ P L R
Sbjct: 25 GGGRAGGTGRSITAASELSPGERARRKKPQSAREASRAWEASISRDPALSPGR--GRRQT 82
Query: 125 GPFLFLGREHVRGGARGGHG-HCGAQGRRRRACRTSLRLGASRRLAWSPRTSPGLRGT-- 181
G GR+ VRGGAR ++ R R L G+ R A S S GL
Sbjct: 83 GSPGGEGRQ-VRGGARNSRDPGLRSEMRPFREAFAKLLSGSPERGALSGEFSLGLENRPR 141
Query: 182 ----SPAQAWPCLLQASESFSAFREPQRGTFPANAAAKESLGG 220
+PA ++ S ++ +RG P A L G
Sbjct: 142 AHRGAPAAVMVVVVMRLRGLSGVQQRRRGLQPELPAPLPPLPG 184
>gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo
sapiens]
Length = 304
Score = 37.4 bits (85), Expect = 0.013
Identities = 54/170 (31%), Positives = 62/170 (36%), Gaps = 23/170 (13%)
Query: 98 LASRTAPAAPPCAPGLLASRCPPEDSAGPFLFLGREHVRGGARGGHGHCGAQGRRRRACR 157
L+S + P +L + AGP R RGGA GG G C +GR R C
Sbjct: 56 LSSPSLGGGPAAGSAILRAGSRSPRGAGPGAAGPRAAGRGGAGGG-GRCCTRGRGRFPCA 114
Query: 158 TSLRLGASRRLAWSP---RTS-------PGLRG-TSPAQAWPCLLQASESFSAFREPQRG 206
S GA R SP R+S P LRG + +A P LL R
Sbjct: 115 GSGGRGARSRGCHSPSCCRSSSCAWHRWPQLRGREAEPRASPALL------ICIAPRPRP 168
Query: 207 TFPA----NAAAKESLGGVILTAFLASAGEQLGDTADARASSPTTPRSAP 252
PA A A L L SAG RAS PT PR P
Sbjct: 169 ALPAALHIGARATAGLAAKRAQPQLCSAGTAARGRR-TRASPPTPPRPRP 217
>gi|239741815 PREDICTED: hypothetical protein XP_002342320 [Homo
sapiens]
Length = 448
Score = 37.4 bits (85), Expect = 0.013
Identities = 47/163 (28%), Positives = 63/163 (38%), Gaps = 10/163 (6%)
Query: 65 GGSRLGDQRQEVRAAAGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPPEDSA 124
GG R G + + AA+ PGE R+ SA+ ASR A+ P L R
Sbjct: 25 GGGRAGGTGRSITAASELSPGERARRKKPQSAREASRAWEASISRDPALSPGR--GRRQT 82
Query: 125 GPFLFLGREHVRGGARGGHG-HCGAQGRRRRACRTSLRLGASRRLAWSPRTSPGLRGT-- 181
G GR+ VRGGAR ++ R R L G+ R A S S GL
Sbjct: 83 GSPGGEGRQ-VRGGARNSRDPGLRSEMRPFREAFAKLLSGSPERGALSGEFSLGLENRPR 141
Query: 182 ----SPAQAWPCLLQASESFSAFREPQRGTFPANAAAKESLGG 220
+PA ++ S ++ +RG P A L G
Sbjct: 142 AHRGAPAAVMVVVVMRLRGLSGVQQRRRGLQPELPAPLPPLPG 184
>gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo
sapiens]
Length = 459
Score = 37.0 bits (84), Expect = 0.018
Identities = 53/196 (27%), Positives = 74/196 (37%), Gaps = 44/196 (22%)
Query: 77 RAAAGQVPGEAGARRARSSAQLASRTAPA----------APPCAPGLLASRCPPEDSAGP 126
R AA PG + AR +A R P PP APG ++ PP P
Sbjct: 61 RKAAQLQPGRGKSCGARRAALPLLRYPPEPGVFPFLVLWTPPFAPGRIS---PP----AP 113
Query: 127 FLFLGREHVRGGARGGHGHCGAQGRR--RRACRTSLRLGASRRLAWSPRTSPGLRGTSPA 184
FL + + GG G A+G+R R A R G +RR+ +P ++ G SP+
Sbjct: 114 QAFLAQRSPARASPGG-GFTSAEGKRKTRPAGRGG---GRTRRVVAAPESAAAAPGRSPS 169
Query: 185 QAWPCLLQASESFSAFREPQRGTFPANAAAKESLGGVILTAFLASAGEQLGDTADARASS 244
A P ++ R R AA ++ G A +R++S
Sbjct: 170 PADPGSTSSATRVPRARRSSRRALQPRHAAPDAPG------------------APSRSTS 211
Query: 245 PTTPRSAPSSDSFPRS 260
TP AP FP S
Sbjct: 212 QATPPPAP---RFPAS 224
>gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo
sapiens]
Length = 459
Score = 37.0 bits (84), Expect = 0.018
Identities = 53/196 (27%), Positives = 74/196 (37%), Gaps = 44/196 (22%)
Query: 77 RAAAGQVPGEAGARRARSSAQLASRTAPA----------APPCAPGLLASRCPPEDSAGP 126
R AA PG + AR +A R P PP APG ++ PP P
Sbjct: 61 RKAAQLQPGRGKSCGARRAALPLLRYPPEPGVFPFLVLWTPPFAPGRIS---PP----AP 113
Query: 127 FLFLGREHVRGGARGGHGHCGAQGRR--RRACRTSLRLGASRRLAWSPRTSPGLRGTSPA 184
FL + + GG G A+G+R R A R G +RR+ +P ++ G SP+
Sbjct: 114 QAFLAQRSPARASPGG-GFTSAEGKRKTRPAGRGG---GRTRRVVAAPESAAAAPGRSPS 169
Query: 185 QAWPCLLQASESFSAFREPQRGTFPANAAAKESLGGVILTAFLASAGEQLGDTADARASS 244
A P ++ R R AA ++ G A +R++S
Sbjct: 170 PADPGSTSSATRVPRARRSSRRALQPRHAAPDAPG------------------APSRSTS 211
Query: 245 PTTPRSAPSSDSFPRS 260
TP AP FP S
Sbjct: 212 QATPPPAP---RFPAS 224
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 37.0 bits (84), Expect = 0.018
Identities = 72/257 (28%), Positives = 87/257 (33%), Gaps = 56/257 (21%)
Query: 24 PPSPERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGFCAASGGSRLGD---QRQEVRAAA 80
P SP + CG S S R GP ++ G A+ LGD EV A
Sbjct: 127 PDSPPSTFCGDS-GFSGSSSYGRLGP-----SEPRGIYASERPKSLGDASPSAPEVVGAR 180
Query: 81 GQVP----------GEAGARRARSSAQLASRTAPAAPPCAPGLLASRCPPEDSAGPFLFL 130
VP G + A SSA+ +R P P +A R P P
Sbjct: 181 AAVPRSFSAPYPTAGGSAGPEACSSAERRARAGPFLTPSPLHAVAMRSPRPCGRPP---T 237
Query: 131 GREHVRGGARGGHGHCGAQGRRRRACRTSLRLGASRRLAWSPRTSPG------LRGTSPA 184
G R G+ A RRRR RR A PRTSPG R S
Sbjct: 238 DSPDAGGAGRPLDGYISALLRRRR-----------RRGAGQPRTSPGGADGGPRRQNSVR 286
Query: 185 QAWPCLLQASESFSAFREP---QRGTFPANAAAKESLGGVILTAFLASAGEQLGDTADAR 241
Q P + S REP + G P + AA L+ AS+ E
Sbjct: 287 QRPPDASPSPGSARPAREPSLERVGGHPTSPAA--------LSRAWASSWE------SEA 332
Query: 242 ASSPTTPRSAPSSDSFP 258
A P P +APS P
Sbjct: 333 APEPAAPPAAPSPPDSP 349
Score = 34.3 bits (77), Expect = 0.11
Identities = 41/135 (30%), Positives = 46/135 (34%), Gaps = 26/135 (19%)
Query: 14 ACVAGTGQPSPPSPERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGFCAASGGSRLGDQR 73
A +G P P+ ER R PR GP + G C R
Sbjct: 434 ASAVPSGPPKYPTAERE--------EPRPPRPRRGPAPTLAAQAAGSC------RRWRST 479
Query: 74 QEVRAAAGQVPGEAGARRARSSAQLASRTAPAAPPCAPGL-LASRCPPEDS---AGPFLF 129
E+ AA G RR R A A P P AP L C DS AG
Sbjct: 480 AEIDAADG--------RRVRPRAPAARVPGPGPSPSAPQRRLLYGCAGSDSECSAGRLGP 531
Query: 130 LGREHVRGGARGGHG 144
LGR GG GG+G
Sbjct: 532 LGRRGPAGGVGGGYG 546
>gi|39812496 Sp8 transcription factor isoform 1 [Homo sapiens]
Length = 508
Score = 36.6 bits (83), Expect = 0.023
Identities = 41/138 (29%), Positives = 51/138 (36%), Gaps = 13/138 (9%)
Query: 18 GTGQPSPPS--PERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGFCAASGGSRLGDQRQE 75
G+ PSP S S+ G G H +R S+ + G+ L+ F SG SR G
Sbjct: 28 GSPSPSPSSLSDSSSSFGKGFHPWKRSSSSSSASCNVVGSSLSSF-GVSGASRNGGSSSA 86
Query: 76 VRAAAGQVPGEA---------GARRARSSAQLASRTAPAAPPCAPGLLASRCPPEDSAGP 126
AAA A G S+ L S +A AA A AS P +
Sbjct: 87 AAAAAAAAAAAAALVSDSFSCGGSPGSSAFSLTSSSA-AAAAAAAAAAASSSPFANDYSV 145
Query: 127 FLFLGREHVRGGARGGHG 144
F G GG GG G
Sbjct: 146 FQAPGVSGGSGGGGGGGG 163
>gi|39812501 Sp8 transcription factor isoform 2 [Homo sapiens]
Length = 490
Score = 36.6 bits (83), Expect = 0.023
Identities = 41/138 (29%), Positives = 51/138 (36%), Gaps = 13/138 (9%)
Query: 18 GTGQPSPPS--PERSACGCGLHLSRRKSAPRGGPGVLPGTKLNGFCAASGGSRLGDQRQE 75
G+ PSP S S+ G G H +R S+ + G+ L+ F SG SR G
Sbjct: 10 GSPSPSPSSLSDSSSSFGKGFHPWKRSSSSSSASCNVVGSSLSSF-GVSGASRNGGSSSA 68
Query: 76 VRAAAGQVPGEA---------GARRARSSAQLASRTAPAAPPCAPGLLASRCPPEDSAGP 126
AAA A G S+ L S +A AA A AS P +
Sbjct: 69 AAAAAAAAAAAAALVSDSFSCGGSPGSSAFSLTSSSA-AAAAAAAAAAASSSPFANDYSV 127
Query: 127 FLFLGREHVRGGARGGHG 144
F G GG GG G
Sbjct: 128 FQAPGVSGGSGGGGGGGG 145
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.131 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,875,143
Number of Sequences: 37866
Number of extensions: 721643
Number of successful extensions: 4898
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 373
Number of HSP's that attempted gapping in prelim test: 4367
Number of HSP's gapped (non-prelim): 875
length of query: 263
length of database: 18,247,518
effective HSP length: 100
effective length of query: 163
effective length of database: 14,460,918
effective search space: 2357129634
effective search space used: 2357129634
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.