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Search of human proteins with 239752599
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752599 PREDICTED: transmembrane protein 114, partial
[Homo sapiens]
(217 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752599 PREDICTED: transmembrane protein 114, partial [Homo... 420 e-118
gi|239756473 PREDICTED: transmembrane protein 114 [Homo sapiens] 419 e-118
gi|226437592 transmembrane protein 114 [Homo sapiens] 419 e-118
gi|239745400 PREDICTED: transmembrane protein 114 [Homo sapiens] 233 1e-61
gi|93588650 claudin domain containing 1 protein isoform a [Homo ... 56 3e-08
gi|93588620 claudin domain containing 1 protein isoform b [Homo ... 56 3e-08
gi|93588614 claudin domain containing 1 protein isoform a [Homo ... 56 3e-08
gi|93588624 claudin domain containing 1 protein isoform a [Homo ... 56 3e-08
gi|11096340 claudin domain containing 1 protein isoform a [Homo ... 56 3e-08
gi|24586686 voltage-dependent calcium channel gamma-8 subunit [H... 56 3e-08
gi|5174405 voltage-dependent calcium channel gamma-2 subunit [Ho... 55 5e-08
gi|7656948 voltage-dependent calcium channel gamma-4 subunit [Ho... 55 6e-08
gi|5729756 voltage-dependent calcium channel gamma-3 subunit [Ho... 53 2e-07
gi|93588657 claudin domain containing 1 protein isoform d [Homo ... 51 7e-07
gi|22027551 voltage-dependent calcium channel gamma-5 subunit is... 47 1e-05
gi|7656950 voltage-dependent calcium channel gamma-5 subunit iso... 47 1e-05
gi|21361975 voltage-dependent calcium channel gamma-7 subunit [H... 39 0.003
gi|22748835 transmembrane protein 178 [Homo sapiens] 39 0.004
gi|50345279 claudin 18 isoform 2 [Homo sapiens] 36 0.022
gi|71999143 opsin 4 isoform 2 [Homo sapiens] 34 0.084
gi|7705961 claudin 18 isoform 1 [Homo sapiens] 34 0.084
gi|239916002 lens intrinsic membrane protein 2, 19kDa isoform 2 ... 34 0.11
gi|4503561 epithelial membrane protein 2 [Homo sapiens] 34 0.11
gi|5031949 natural killer cell group 7 sequence [Homo sapiens] 34 0.11
gi|169171558 PREDICTED: hypothetical protein [Homo sapiens] 32 0.32
gi|169171977 PREDICTED: hypothetical protein [Homo sapiens] 32 0.32
gi|169171016 PREDICTED: hypothetical protein [Homo sapiens] 32 0.32
gi|239509059 PREDICTED: hypothetical protein [Homo sapiens] 32 0.32
gi|4503563 epithelial membrane protein 3 [Homo sapiens] 32 0.54
gi|169167239 PREDICTED: claudin-24-like [Homo sapiens] 31 0.71
>gi|239752599 PREDICTED: transmembrane protein 114, partial [Homo
sapiens]
Length = 217
Score = 420 bits (1080), Expect = e-118
Identities = 217/217 (100%), Positives = 217/217 (100%)
Query: 1 GLAGAAALTGALSFVLLAAAIGTEFWYIIDTERLERTGPGAQDLLGSINRSQPEPLSSHS 60
GLAGAAALTGALSFVLLAAAIGTEFWYIIDTERLERTGPGAQDLLGSINRSQPEPLSSHS
Sbjct: 1 GLAGAAALTGALSFVLLAAAIGTEFWYIIDTERLERTGPGAQDLLGSINRSQPEPLSSHS 60
Query: 61 GLWRTCRVQSPCTPLMNPFRLENVTVSESSRQLLTMHGTFVILLPLSLILMVFGGMTGFL 120
GLWRTCRVQSPCTPLMNPFRLENVTVSESSRQLLTMHGTFVILLPLSLILMVFGGMTGFL
Sbjct: 61 GLWRTCRVQSPCTPLMNPFRLENVTVSESSRQLLTMHGTFVILLPLSLILMVFGGMTGFL 120
Query: 121 SFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCLLEEKALLDQVDISFG 180
SFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCLLEEKALLDQVDISFG
Sbjct: 121 SFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCLLEEKALLDQVDISFG 180
Query: 181 WSLALGWISFIAELLTGAAFLAAARELSLRRRQDQAI 217
WSLALGWISFIAELLTGAAFLAAARELSLRRRQDQAI
Sbjct: 181 WSLALGWISFIAELLTGAAFLAAARELSLRRRQDQAI 217
>gi|239756473 PREDICTED: transmembrane protein 114 [Homo sapiens]
Length = 223
Score = 419 bits (1077), Expect = e-118
Identities = 216/217 (99%), Positives = 217/217 (100%)
Query: 1 GLAGAAALTGALSFVLLAAAIGTEFWYIIDTERLERTGPGAQDLLGSINRSQPEPLSSHS 60
GLAGAAALTGALSFVLLAAAIGT+FWYIIDTERLERTGPGAQDLLGSINRSQPEPLSSHS
Sbjct: 7 GLAGAAALTGALSFVLLAAAIGTDFWYIIDTERLERTGPGAQDLLGSINRSQPEPLSSHS 66
Query: 61 GLWRTCRVQSPCTPLMNPFRLENVTVSESSRQLLTMHGTFVILLPLSLILMVFGGMTGFL 120
GLWRTCRVQSPCTPLMNPFRLENVTVSESSRQLLTMHGTFVILLPLSLILMVFGGMTGFL
Sbjct: 67 GLWRTCRVQSPCTPLMNPFRLENVTVSESSRQLLTMHGTFVILLPLSLILMVFGGMTGFL 126
Query: 121 SFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCLLEEKALLDQVDISFG 180
SFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCLLEEKALLDQVDISFG
Sbjct: 127 SFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCLLEEKALLDQVDISFG 186
Query: 181 WSLALGWISFIAELLTGAAFLAAARELSLRRRQDQAI 217
WSLALGWISFIAELLTGAAFLAAARELSLRRRQDQAI
Sbjct: 187 WSLALGWISFIAELLTGAAFLAAARELSLRRRQDQAI 223
>gi|226437592 transmembrane protein 114 [Homo sapiens]
Length = 223
Score = 419 bits (1077), Expect = e-118
Identities = 216/217 (99%), Positives = 217/217 (100%)
Query: 1 GLAGAAALTGALSFVLLAAAIGTEFWYIIDTERLERTGPGAQDLLGSINRSQPEPLSSHS 60
GLAGAAALTGALSFVLLAAAIGT+FWYIIDTERLERTGPGAQDLLGSINRSQPEPLSSHS
Sbjct: 7 GLAGAAALTGALSFVLLAAAIGTDFWYIIDTERLERTGPGAQDLLGSINRSQPEPLSSHS 66
Query: 61 GLWRTCRVQSPCTPLMNPFRLENVTVSESSRQLLTMHGTFVILLPLSLILMVFGGMTGFL 120
GLWRTCRVQSPCTPLMNPFRLENVTVSESSRQLLTMHGTFVILLPLSLILMVFGGMTGFL
Sbjct: 67 GLWRTCRVQSPCTPLMNPFRLENVTVSESSRQLLTMHGTFVILLPLSLILMVFGGMTGFL 126
Query: 121 SFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCLLEEKALLDQVDISFG 180
SFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCLLEEKALLDQVDISFG
Sbjct: 127 SFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCLLEEKALLDQVDISFG 186
Query: 181 WSLALGWISFIAELLTGAAFLAAARELSLRRRQDQAI 217
WSLALGWISFIAELLTGAAFLAAARELSLRRRQDQAI
Sbjct: 187 WSLALGWISFIAELLTGAAFLAAARELSLRRRQDQAI 223
>gi|239745400 PREDICTED: transmembrane protein 114 [Homo sapiens]
Length = 122
Score = 233 bits (593), Expect = 1e-61
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 96 MHGTFVILLPLSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYS 155
MHGTFVILLPLSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYS
Sbjct: 1 MHGTFVILLPLSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYS 60
Query: 156 AAAFREALCLLEEKALLDQVDISFGWSLALGWISFIAELLTGAAFLAAARELSLRRRQDQ 215
AAAFREALCLLEEKALLDQVDISFGWSLALGWISFIAELLTGAAFLAAARELSLRRRQDQ
Sbjct: 61 AAAFREALCLLEEKALLDQVDISFGWSLALGWISFIAELLTGAAFLAAARELSLRRRQDQ 120
Query: 216 AI 217
AI
Sbjct: 121 AI 122
>gi|93588650 claudin domain containing 1 protein isoform a [Homo
sapiens]
Length = 253
Score = 55.8 bits (133), Expect = 3e-08
Identities = 64/238 (26%), Positives = 99/238 (41%), Gaps = 51/238 (21%)
Query: 6 AALTGALSFVLLAAAIGTEFWYIIDTERLERTGPGAQDLLGSI----------NRSQPEP 55
A + +S + +AA+IGT+FWY E + DL SI ++ +
Sbjct: 12 ACVLSLISTIYMAASIGTDFWY----EYRSPVQENSSDLNKSIWDEFISDEADEKTYNDA 67
Query: 56 LSSHSG---LWRTC-RVQSPCTPLMNPFRLENV---------TVSESSRQLLTMHG---- 98
L ++G LWR C + P R E+ T++E + G
Sbjct: 68 LFRYNGTVGLWRRCITIPKNMHWYSPPERTESFDVVTKCVSFTLTEQFMEKFVDPGNHNS 127
Query: 99 ------TFV----ILLP-LSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAG 147
T++ LLP +SL LM FG + G + + ++ + TGIL L + TL
Sbjct: 128 GIDLLRTYLWRCQFLLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGS 187
Query: 148 ISVYIAYSAAAFREALCLLEEK-ALLDQVDISFGWSLALGWISFIAELLTGAAFLAAA 204
+S Y+A + LL +K L D V FGWS L +S + + A F+ AA
Sbjct: 188 VSCYVA--------GIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAA 237
>gi|93588620 claudin domain containing 1 protein isoform b [Homo
sapiens]
Length = 276
Score = 55.8 bits (133), Expect = 3e-08
Identities = 64/238 (26%), Positives = 99/238 (41%), Gaps = 51/238 (21%)
Query: 6 AALTGALSFVLLAAAIGTEFWYIIDTERLERTGPGAQDLLGSI----------NRSQPEP 55
A + +S + +AA+IGT+FWY E + DL SI ++ +
Sbjct: 35 ACVLSLISTIYMAASIGTDFWY----EYRSPVQENSSDLNKSIWDEFISDEADEKTYNDA 90
Query: 56 LSSHSG---LWRTC-RVQSPCTPLMNPFRLENV---------TVSESSRQLLTMHG---- 98
L ++G LWR C + P R E+ T++E + G
Sbjct: 91 LFRYNGTVGLWRRCITIPKNMHWYSPPERTESFDVVTKCVSFTLTEQFMEKFVDPGNHNS 150
Query: 99 ------TFV----ILLP-LSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAG 147
T++ LLP +SL LM FG + G + + ++ + TGIL L + TL
Sbjct: 151 GIDLLRTYLWRCQFLLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGS 210
Query: 148 ISVYIAYSAAAFREALCLLEEK-ALLDQVDISFGWSLALGWISFIAELLTGAAFLAAA 204
+S Y+A + LL +K L D V FGWS L +S + + A F+ AA
Sbjct: 211 VSCYVA--------GIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAA 260
>gi|93588614 claudin domain containing 1 protein isoform a [Homo
sapiens]
Length = 253
Score = 55.8 bits (133), Expect = 3e-08
Identities = 64/238 (26%), Positives = 99/238 (41%), Gaps = 51/238 (21%)
Query: 6 AALTGALSFVLLAAAIGTEFWYIIDTERLERTGPGAQDLLGSI----------NRSQPEP 55
A + +S + +AA+IGT+FWY E + DL SI ++ +
Sbjct: 12 ACVLSLISTIYMAASIGTDFWY----EYRSPVQENSSDLNKSIWDEFISDEADEKTYNDA 67
Query: 56 LSSHSG---LWRTC-RVQSPCTPLMNPFRLENV---------TVSESSRQLLTMHG---- 98
L ++G LWR C + P R E+ T++E + G
Sbjct: 68 LFRYNGTVGLWRRCITIPKNMHWYSPPERTESFDVVTKCVSFTLTEQFMEKFVDPGNHNS 127
Query: 99 ------TFV----ILLP-LSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAG 147
T++ LLP +SL LM FG + G + + ++ + TGIL L + TL
Sbjct: 128 GIDLLRTYLWRCQFLLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGS 187
Query: 148 ISVYIAYSAAAFREALCLLEEK-ALLDQVDISFGWSLALGWISFIAELLTGAAFLAAA 204
+S Y+A + LL +K L D V FGWS L +S + + A F+ AA
Sbjct: 188 VSCYVA--------GIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAA 237
>gi|93588624 claudin domain containing 1 protein isoform a [Homo
sapiens]
Length = 253
Score = 55.8 bits (133), Expect = 3e-08
Identities = 64/238 (26%), Positives = 99/238 (41%), Gaps = 51/238 (21%)
Query: 6 AALTGALSFVLLAAAIGTEFWYIIDTERLERTGPGAQDLLGSI----------NRSQPEP 55
A + +S + +AA+IGT+FWY E + DL SI ++ +
Sbjct: 12 ACVLSLISTIYMAASIGTDFWY----EYRSPVQENSSDLNKSIWDEFISDEADEKTYNDA 67
Query: 56 LSSHSG---LWRTC-RVQSPCTPLMNPFRLENV---------TVSESSRQLLTMHG---- 98
L ++G LWR C + P R E+ T++E + G
Sbjct: 68 LFRYNGTVGLWRRCITIPKNMHWYSPPERTESFDVVTKCVSFTLTEQFMEKFVDPGNHNS 127
Query: 99 ------TFV----ILLP-LSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAG 147
T++ LLP +SL LM FG + G + + ++ + TGIL L + TL
Sbjct: 128 GIDLLRTYLWRCQFLLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGS 187
Query: 148 ISVYIAYSAAAFREALCLLEEK-ALLDQVDISFGWSLALGWISFIAELLTGAAFLAAA 204
+S Y+A + LL +K L D V FGWS L +S + + A F+ AA
Sbjct: 188 VSCYVA--------GIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAA 237
>gi|11096340 claudin domain containing 1 protein isoform a [Homo
sapiens]
Length = 253
Score = 55.8 bits (133), Expect = 3e-08
Identities = 64/238 (26%), Positives = 99/238 (41%), Gaps = 51/238 (21%)
Query: 6 AALTGALSFVLLAAAIGTEFWYIIDTERLERTGPGAQDLLGSI----------NRSQPEP 55
A + +S + +AA+IGT+FWY E + DL SI ++ +
Sbjct: 12 ACVLSLISTIYMAASIGTDFWY----EYRSPVQENSSDLNKSIWDEFISDEADEKTYNDA 67
Query: 56 LSSHSG---LWRTC-RVQSPCTPLMNPFRLENV---------TVSESSRQLLTMHG---- 98
L ++G LWR C + P R E+ T++E + G
Sbjct: 68 LFRYNGTVGLWRRCITIPKNMHWYSPPERTESFDVVTKCVSFTLTEQFMEKFVDPGNHNS 127
Query: 99 ------TFV----ILLP-LSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAG 147
T++ LLP +SL LM FG + G + + ++ + TGIL L + TL
Sbjct: 128 GIDLLRTYLWRCQFLLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGS 187
Query: 148 ISVYIAYSAAAFREALCLLEEK-ALLDQVDISFGWSLALGWISFIAELLTGAAFLAAA 204
+S Y+A + LL +K L D V FGWS L +S + + A F+ AA
Sbjct: 188 VSCYVA--------GIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAA 237
>gi|24586686 voltage-dependent calcium channel gamma-8 subunit [Homo
sapiens]
Length = 425
Score = 55.8 bits (133), Expect = 3e-08
Identities = 61/218 (27%), Positives = 96/218 (44%), Gaps = 23/218 (10%)
Query: 13 SFVLLAAAIGTEFWY-----IIDTERLERTGPGAQDLLGSINRSQPEPLS--SHSGLWRT 65
+F L+ AI T++W I +T L G G S+ + +HSGLWR
Sbjct: 31 AFGLMTIAISTDYWLYTRALICNTTNLTAGGDDGTPHRGGGGASEKKDPGGLTHSGLWRI 90
Query: 66 CRVQS----PCTPLMNPFRLENVTVSESSRQLLTMHGTFVILLPLSLILMVFGGMTGFLS 121
C ++ C + N F + +S+ LL + I LS IL++ GG+ S
Sbjct: 91 CCLEGLKRGVCVKI-NHFPEDTDYDHDSAEYLLRVVRASSIFPILSAILLLLGGVCVAAS 149
Query: 122 FLLQAYLLLLL-TGILFLFGAMVTLAGISVYIAYSAAAFREALCLLEEKALLDQVDISFG 180
+ ++ ++L GILF+ + + G+ VYI SA A EEK + S+G
Sbjct: 150 RVYKSKRNIILGAGILFVAAGLSNIIGVIVYI--SANAGEPGPKRDEEK----KNHYSYG 203
Query: 181 WSLALGWISFIAELLTGA----AFLAAARELSLRRRQD 214
WS G +SFI + G ++ +RE + R D
Sbjct: 204 WSFYFGGLSFILAEVIGVLAVNIYIERSREAHCQSRSD 241
>gi|5174405 voltage-dependent calcium channel gamma-2 subunit [Homo
sapiens]
Length = 323
Score = 55.1 bits (131), Expect = 5e-08
Identities = 49/189 (25%), Positives = 88/189 (46%), Gaps = 18/189 (9%)
Query: 13 SFVLLAAAIGTEFWYIIDTERLERTGPGAQDLLGSINRSQPEPLSSHSGLWRTCRVQSPC 72
+F L+ A+GT++W + + + +T +++ N E + +HSGLWRTC ++
Sbjct: 20 AFSLMTIAVGTDYW--LYSRGVCKTKSVSENETSKKN----EEVMTHSGLWRTCCLEGNF 73
Query: 73 TPL---MNPFRLENVTVSESSRQLLTMHGTFVILLPLSLILMVFGGMTGFLS-FLLQAYL 128
L ++ F + ++++ L I LS+IL+ GG+ S F +
Sbjct: 74 KGLCKQIDHFPEDADYEADTAEYFLRAVRASSIFPILSVILLFMGGLCIAASEFYKTRHN 133
Query: 129 LLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCLLEEKALLDQVDISFGWSLALGWI 188
++L GI F+ + + GI VYI+ +A K+ + S+GWS G +
Sbjct: 134 IILSAGIFFVSAGLSNIIGIIVYISANAGD--------PSKSDSKKNSYSYGWSFYFGAL 185
Query: 189 SFIAELLTG 197
SFI + G
Sbjct: 186 SFIIAEMVG 194
>gi|7656948 voltage-dependent calcium channel gamma-4 subunit [Homo
sapiens]
Length = 327
Score = 54.7 bits (130), Expect = 6e-08
Identities = 61/224 (27%), Positives = 97/224 (43%), Gaps = 20/224 (8%)
Query: 1 GLAGAAALTGALS-FVLLAAAIGTEFWYIIDTERLERTGPGAQDLLGSINRSQPEPLSSH 59
GL GA + F L+A AIGT++W T D G R L+ H
Sbjct: 7 GLQMLLTTAGAFAAFSLMAIAIGTDYWLYSSAHICNGTNLTMDD--GPPPRRARGDLT-H 63
Query: 60 SGLWRTCRVQ----SPCTPLMNPFRLENVTVSESSRQLLTMHGTFVILLPLSLILMVFGG 115
SGLWR C ++ C + N F +N +SS LL + + LS IL++ GG
Sbjct: 64 SGLWRVCCIEGIYKGHCFRI-NHFPEDNDYDHDSSEYLLRIVRASSVFPILSTILLLLGG 122
Query: 116 M-TGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCLLEEKALLDQ 174
+ G + ++L GILF+ + + GI VYI+ + + E+K +
Sbjct: 123 LCIGAGRIYSRKNNIVLSAGILFVAAGLSNIIGIIVYISSNTGDPSDKRD--EDK----K 176
Query: 175 VDISFGWSLALGWISFIAELLTGA----AFLAAARELSLRRRQD 214
++GWS G +SFI G ++ +EL + +++
Sbjct: 177 NHYNYGWSFYFGALSFIVAETVGVLAVNIYIEKNKELRFKTKRE 220
>gi|5729756 voltage-dependent calcium channel gamma-3 subunit [Homo
sapiens]
Length = 315
Score = 53.1 bits (126), Expect = 2e-07
Identities = 48/189 (25%), Positives = 85/189 (44%), Gaps = 19/189 (10%)
Query: 13 SFVLLAAAIGTEFWYIIDTERLERTGPGAQDLLGSINRSQPEPLSSHSGLWRTCRVQSPC 72
+F L+ A+GT++W + + + RT + + N E + +HSGLWRTC ++
Sbjct: 20 AFSLMTIAVGTDYW--LYSRGVCRTKSTSDNETSRKN----EEVMTHSGLWRTCCLEGAF 73
Query: 73 TPL---MNPFRLENVTVSESSRQLLTMHGTFVILLPLSLILMVFGGMTGFLS-FLLQAYL 128
+ ++ F + +++ LL + LS+ L+ FGG+ S F +
Sbjct: 74 RGVCKKIDHFPEDADYEQDTAEYLLRAVRASSVFPILSVTLLFFGGLCVAASEFHRSRHN 133
Query: 129 LLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCLLEEKALLDQVDISFGWSLALGWI 188
++L GI F+ + + GI VYI+ +A + + S+GWS G
Sbjct: 134 VILSAGIFFVSAGLSNIIGIIVYISANAG---------DPGQRDSKKSYSYGWSFYFGAF 184
Query: 189 SFIAELLTG 197
SFI + G
Sbjct: 185 SFIIAEIVG 193
>gi|93588657 claudin domain containing 1 protein isoform d [Homo
sapiens]
Length = 158
Score = 51.2 bits (121), Expect = 7e-07
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 103 LLP-LSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFRE 161
LLP +SL LM FG + G + + ++ + TGIL L + TL +S Y+A
Sbjct: 47 LLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVA-------- 98
Query: 162 ALCLLEEK-ALLDQVDISFGWSLALGWISFIAELLTGAAFLAAA 204
+ LL +K L D V FGWS L +S + + A F+ AA
Sbjct: 99 GIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAA 142
>gi|22027551 voltage-dependent calcium channel gamma-5 subunit
isoform a [Homo sapiens]
Length = 275
Score = 47.4 bits (111), Expect = 1e-05
Identities = 41/181 (22%), Positives = 76/181 (41%), Gaps = 21/181 (11%)
Query: 16 LLAAAIGTEFWYIIDTERLERTGPGAQDLLGSINRSQPEPLSSHSGLWRTC----RVQSP 71
LL A+ T++W ++ + ++ N+S +S HSGLWR C +
Sbjct: 23 LLGIAVSTDYWLYLE-----------EGVIVPQNQSTEIKMSLHSGLWRVCFLAGEERGR 71
Query: 72 CTPLMNPFRLENVTVSESSRQLLTMHGTFVILLPLSLILMVFGGMTGFLSFLL-QAYLLL 130
C + + SES+ +L M + +SL M G + + + +L
Sbjct: 72 CFTIEYVMPMNTQLTSESTVNVLKMIRSATPFPLVSLFFMFIGFILNNIGHIRPHRTILA 131
Query: 131 LLTGILFLFGAMVTLAGISVYIAYSAAAFREALCLLEEKALLDQVDISFGWSLALGWISF 190
++GI F+ + + G+ +YI ++ + + L K + +GWS A ISF
Sbjct: 132 FVSGIFFILSGLSLVVGLVLYI----SSINDEM-LNRTKDAETYFNYKYGWSFAFAAISF 186
Query: 191 I 191
+
Sbjct: 187 L 187
>gi|7656950 voltage-dependent calcium channel gamma-5 subunit
isoform b [Homo sapiens]
Length = 296
Score = 47.4 bits (111), Expect = 1e-05
Identities = 41/181 (22%), Positives = 76/181 (41%), Gaps = 21/181 (11%)
Query: 16 LLAAAIGTEFWYIIDTERLERTGPGAQDLLGSINRSQPEPLSSHSGLWRTC----RVQSP 71
LL A+ T++W ++ + ++ N+S +S HSGLWR C +
Sbjct: 23 LLGIAVSTDYWLYLE-----------EGVIVPQNQSTEIKMSLHSGLWRVCFLAGEERGR 71
Query: 72 CTPLMNPFRLENVTVSESSRQLLTMHGTFVILLPLSLILMVFGGMTGFLSFLL-QAYLLL 130
C + + SES+ +L M + +SL M G + + + +L
Sbjct: 72 CFTIEYVMPMNTQLTSESTVNVLKMIRSATPFPLVSLFFMFIGFILNNIGHIRPHRTILA 131
Query: 131 LLTGILFLFGAMVTLAGISVYIAYSAAAFREALCLLEEKALLDQVDISFGWSLALGWISF 190
++GI F+ + + G+ +YI ++ + + L K + +GWS A ISF
Sbjct: 132 FVSGIFFILSGLSLVVGLVLYI----SSINDEM-LNRTKDAETYFNYKYGWSFAFAAISF 186
Query: 191 I 191
+
Sbjct: 187 L 187
>gi|21361975 voltage-dependent calcium channel gamma-7 subunit [Homo
sapiens]
Length = 275
Score = 39.3 bits (90), Expect = 0.003
Identities = 38/191 (19%), Positives = 77/191 (40%), Gaps = 21/191 (10%)
Query: 6 AALTGALSFVLLAAAIGTEFWYIIDTERLERTGPGAQDLLGSINRSQPEPLSSHSGLWRT 65
+++ GA +L+ A+ T++W ++ + + N++ ++ H+GLWR
Sbjct: 13 SSVFGACGLLLVGIAVSTDYWLYME-----------EGTVLPQNQTTEVKMALHAGLWRV 61
Query: 66 C----RVQSPCTPLMNPFRLENVTVSESSRQLLTMHGTFVILLPLSLILMVFGGMTGFLS 121
C R + C E V+E++ +L T +SL L+ + +
Sbjct: 62 CFFAGREKGRCVASEYFLEPEINLVTENTENILKTVRTATPFPMVSLFLVFTAFVISNIG 121
Query: 122 FLL-QAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCLLEEKALLDQVDISFG 180
+ Q +L ++GI F+ + + G+ +YI+ E+ +G
Sbjct: 122 HIRPQRTILAFVSGIFFILSGLSLVVGLVLYISSINDEVMNRPSSSEQ-----YFHYRYG 176
Query: 181 WSLALGWISFI 191
WS A SF+
Sbjct: 177 WSFAFAASSFL 187
>gi|22748835 transmembrane protein 178 [Homo sapiens]
Length = 297
Score = 38.5 bits (88), Expect = 0.004
Identities = 42/191 (21%), Positives = 73/191 (38%), Gaps = 36/191 (18%)
Query: 33 RLERTGPGAQDL--------LGSINRSQPEPL-SSHSGLWRTCR---------------V 68
RL GPG D LG ++ P+ +++SGLWR C +
Sbjct: 76 RLLPGGPGRADPESWRSLLGLGGLDAECGRPVFATYSGLWRKCYFLGIDRDIDTLILKGI 135
Query: 69 QSPCTPLM----NPFRLENV------TVSESSRQLLTMHGTFVILLPLSLILMVFGGMTG 118
CT + P RL N+ T+ + LL + L +++ +++ G +
Sbjct: 136 AQRCTAIKYHFSQPIRLRNIPFNLTKTIQQDEWHLLHLRRITAGFLGMAVAVLLCGCIVA 195
Query: 119 FLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCLLEEKALLDQVDIS 178
+SF + L + G+LFL + + Y A + L+ +L V+
Sbjct: 196 TVSFFWEESLTQHVAGLLFLMTGIFCTISLCTYAASISYDLNRLPKLI--YSLPADVEHG 253
Query: 179 FGWSLALGWIS 189
+ WS+ W S
Sbjct: 254 YSWSIFCAWCS 264
>gi|50345279 claudin 18 isoform 2 [Homo sapiens]
Length = 261
Score = 36.2 bits (82), Expect = 0.022
Identities = 38/168 (22%), Positives = 72/168 (42%), Gaps = 11/168 (6%)
Query: 58 SHSGLWRTC-RVQSPCTPLMNPFRLENVTVSESSRQLLTMHGTFVILLPLSLILMVFGGM 116
++ GLWR+C R S T F L + + + L + G ++L + L++ +F
Sbjct: 45 NYQGLWRSCVRESSGFTECRGYFTLLGLPAMLQAVRALMIVG--IVLGAIGLLVSIFALK 102
Query: 117 T---GFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCLLEE----K 169
G + +A + L +GI+F+ + +AG+SV+ F + +
Sbjct: 103 CIRIGSMEDSAKANMTLT-SGIMFIVSGLCAIAGVSVFANMLVTNFWMSTANMYTGMGGM 161
Query: 170 ALLDQVDISFGWSLALGWISFIAELLTGAAFLAAARELSLRRRQDQAI 217
Q +FG +L +GW++ L+ G A R L+ +A+
Sbjct: 162 VQTVQTRYTFGAALFVGWVAGGLTLIGGVMMCIACRGLAPEETNYKAV 209
>gi|71999143 opsin 4 isoform 2 [Homo sapiens]
Length = 489
Score = 34.3 bits (77), Expect = 0.084
Identities = 43/135 (31%), Positives = 56/135 (41%), Gaps = 15/135 (11%)
Query: 81 LENVTVSESSRQLLTMHGTFVILLPLSLILMVFGGMTGFLSFLLQAYLLLLLTGILF--- 137
L VTV SR L T F+I L +S LM F F + L L TG F
Sbjct: 100 LRGVTVMMQSRSLRTPANMFIINLAVSDFLMSFTQAPVFFTSSLYKQWLFGETGCEFYAF 159
Query: 138 ---LFG--AMVTLAGIS----VYIAYSAAAFREALCLLEEKALLDQVDISFGWSLA--LG 186
LFG +M+TL I+ + I A F A LL + WSL G
Sbjct: 160 CGALFGISSMITLTAIALDRYLVITRPLATFGVASKRRAAFVLLGVWLYALAWSLPPFFG 219
Query: 187 WISFIAE-LLTGAAF 200
W +++ E LLT ++
Sbjct: 220 WSAYVPEGLLTSCSW 234
>gi|7705961 claudin 18 isoform 1 [Homo sapiens]
Length = 261
Score = 34.3 bits (77), Expect = 0.084
Identities = 38/170 (22%), Positives = 72/170 (42%), Gaps = 17/170 (10%)
Query: 59 HSGLWRTCRVQSP----CTPLMNPFRLENVTVSESSRQLLTMHGTFVILLPLSLILMVFG 114
+ GLWR+C QS C P L + ++ R L+ + ++L + L++ +F
Sbjct: 46 YEGLWRSCVRQSSGFTECRPYFTILGLP--AMLQAVRALMIVG---IVLGAIGLLVSIFA 100
Query: 115 GMT---GFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCLLEE--- 168
G + +A + L +GI+F+ + +AG+SV+ F + +
Sbjct: 101 LKCIRIGSMEDSAKANMTLT-SGIMFIVSGLCAIAGVSVFANMLVTNFWMSTANMYTGMG 159
Query: 169 -KALLDQVDISFGWSLALGWISFIAELLTGAAFLAAARELSLRRRQDQAI 217
Q +FG +L +GW++ L+ G A R L+ +A+
Sbjct: 160 GMVQTVQTRYTFGAALFVGWVAGGLTLIGGVMMCIACRGLAPEETNYKAV 209
>gi|239916002 lens intrinsic membrane protein 2, 19kDa isoform 2
[Homo sapiens]
Length = 173
Score = 33.9 bits (76), Expect = 0.11
Identities = 33/158 (20%), Positives = 58/158 (36%), Gaps = 31/158 (19%)
Query: 58 SHSGLWRTCRVQSPCTPLMNPFRLENVTVSESSRQLLTMHGTFVILLPLSLILMVFGGMT 117
+H GLWR C + + C + N T + F+IL S + + G +
Sbjct: 38 AHQGLWRYC-LGNKCYLQTDSIAYWNATRA------------FMIL---SALCAISGIIM 81
Query: 118 GFLSFLLQAYLLLLL----TGILFLFGAMVTLAGISVYIAYSAAAFREALCLLEEKALLD 173
G ++F Q + GI+F + + +++Y + +
Sbjct: 82 GIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYTGVTVSFLGRRFG--------- 132
Query: 174 QVDISFGWSLALGWISFIAELLTGAAFLAAARELSLRR 211
D F WS LGW++ + G ++ A R RR
Sbjct: 133 --DWRFSWSYILGWVAVLMTFFAGIFYMCAYRVHECRR 168
>gi|4503561 epithelial membrane protein 2 [Homo sapiens]
Length = 167
Score = 33.9 bits (76), Expect = 0.11
Identities = 33/145 (22%), Positives = 59/145 (40%), Gaps = 26/145 (17%)
Query: 62 LWRTCRVQSPCTPLMNPFRLENVTVSESSRQLLTMHGTFVILLPLSLILMVFGGMTGFLS 121
+WR C + CT +++S ++ T+ ++ LS IL F
Sbjct: 38 VWRICTNNTNCT-----------VINDSFQEYSTLQAVQATMI-LSTILCCIA----FFI 81
Query: 122 FLLQAYLL-----LLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCLLEEKALLDQVD 176
F+LQ + L +LT I+ L + + S+Y RE + K +
Sbjct: 82 FVLQLFRLKQGERFVLTSIIQLMSCLCVMIAASIYTDR-----REDIHDKNAKFYPVTRE 136
Query: 177 ISFGWSLALGWISFIAELLTGAAFL 201
S+G+S L W++F ++G +L
Sbjct: 137 GSYGYSYILAWVAFACTFISGMMYL 161
>gi|5031949 natural killer cell group 7 sequence [Homo sapiens]
Length = 165
Score = 33.9 bits (76), Expect = 0.11
Identities = 48/199 (24%), Positives = 72/199 (36%), Gaps = 54/199 (27%)
Query: 6 AALTGALSFVLLAAAIGTEFWYIIDTERLERTGPGAQDLLGSINRSQPEPLSSHSGLWRT 65
A L G+L + A+ T+FW+ E GP S+HSGLW T
Sbjct: 8 ALLGGSLGLMFCLIALSTDFWF-------EAVGPTH---------------SAHSGLWPT 45
Query: 66 CRVQSPCTPLMNPFRLENVTVSESSRQLLTMHGTFVILLPL-SLILMVFGGMTGFLSFLL 124
+ + + TF I+ L +L+ + F ++ F S
Sbjct: 46 GH-------------------GDIISGYIHVTQTFSIMAVLWALVSVSFLVLSCFPSLFP 86
Query: 125 QAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCLLEEKALLDQVDISFGWSLA 184
+ L+ T F A IS+ +A + ++ Q+ F WS
Sbjct: 87 PGHGPLVSTTAAFA-------AAISMVVAMAVYTSERW-----DQPPHPQIQTFFSWSFY 134
Query: 185 LGWISFIAELLTGAAFLAA 203
LGW+S I L TGA L A
Sbjct: 135 LGWVSAILLLCTGALSLGA 153
>gi|169171558 PREDICTED: hypothetical protein [Homo sapiens]
Length = 303
Score = 32.3 bits (72), Expect = 0.32
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 106 LSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCL 165
+++ +++FG + G L L+ + G+LFL G T IS+ + F +
Sbjct: 186 MAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGG--TFCIISLCTCVAGINFELSRYP 243
Query: 166 LEEKALLDQVDISFGWSLALGWISFIAELLTG 197
L D + +GWS+ W L++G
Sbjct: 244 RYLYGLPDDISHGYGWSMFCAWGGLGLTLISG 275
>gi|169171977 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 32.3 bits (72), Expect = 0.32
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 106 LSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCL 165
+++ +++FG + G L L+ + G+LFL G T IS+ + F +
Sbjct: 78 MAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGG--TFCIISLCTCVAGINFELSRYP 135
Query: 166 LEEKALLDQVDISFGWSLALGWISFIAELLTG 197
L D + +GWS+ W L++G
Sbjct: 136 RYLYGLPDDISHGYGWSMFCAWGGLGLTLISG 167
>gi|169171016 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 32.3 bits (72), Expect = 0.32
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 106 LSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCL 165
+++ +++FG + G L L+ + G+LFL G T IS+ + F +
Sbjct: 78 MAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGG--TFCIISLCTCVAGINFELSRYP 135
Query: 166 LEEKALLDQVDISFGWSLALGWISFIAELLTG 197
L D + +GWS+ W L++G
Sbjct: 136 RYLYGLPDDISHGYGWSMFCAWGGLGLTLISG 167
>gi|239509059 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 32.3 bits (72), Expect = 0.32
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 106 LSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFREALCL 165
+++ +++FG + G L L+ + G+LFL G T IS+ + F +
Sbjct: 78 MAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGG--TFCIISLCTCVAGINFELSRYP 135
Query: 166 LEEKALLDQVDISFGWSLALGWISFIAELLTG 197
L D + +GWS+ W L++G
Sbjct: 136 RYLYGLPDDISHGYGWSMFCAWGGLGLTLISG 167
>gi|4503563 epithelial membrane protein 3 [Homo sapiens]
Length = 163
Score = 31.6 bits (70), Expect = 0.54
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 20/105 (19%)
Query: 102 ILLPLSLILMVFGGMTGFLSFLLQAYL-----LLLLTGILFLFGAMVTLAGISVYIAYSA 156
+L+ LSLIL F+ F+ Q Y L TG+ L ++ G +Y ++
Sbjct: 68 VLMVLSLILCCLS----FILFMFQLYTMRRGGLFYATGLCQLCTSVAVFTGALIYAIHA- 122
Query: 157 AAFREALCLLEEKALLDQVDISFGWSLALGWISFIAELLTGAAFL 201
EE SFG+ AL W++F L++G ++
Sbjct: 123 ----------EEILEKHPRGGSFGYCFALAWVAFPLALVSGIIYI 157
>gi|169167239 PREDICTED: claudin-24-like [Homo sapiens]
Length = 220
Score = 31.2 bits (69), Expect = 0.71
Identities = 38/154 (24%), Positives = 55/154 (35%), Gaps = 25/154 (16%)
Query: 61 GLWRTCRVQSPCTPLMNPFRLENVTVSESSRQLLTMHGTFVILLPLSLILMVFGGMTGFL 120
GLW+TC +Q F +E L +S ILM GFL
Sbjct: 49 GLWQTCVIQEEVGMQCKDFDSFLALPAE---------------LRVSRILMFLSNGLGFL 93
Query: 121 SFLLQAYLLLLLT----------GILFLFGAMVTLAGISVYIAYSAAAFREALCLLEEKA 170
L+ + L L +L L G + +GI+ + S A + +E
Sbjct: 94 GLLVSGFGLDCLRIGESQRDLKRRLLILGGILSWASGITALVPVSWVAHKTVQEFWDENV 153
Query: 171 LLDQVDISFGWSLALGWISFIAELLTGAAFLAAA 204
FG +L LGW + ++ LL G AA
Sbjct: 154 PDFVPRWEFGEALFLGWFAGLSLLLGGCLLNCAA 187
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.139 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,038,978
Number of Sequences: 37866
Number of extensions: 280985
Number of successful extensions: 1093
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1033
Number of HSP's gapped (non-prelim): 63
length of query: 217
length of database: 18,247,518
effective HSP length: 98
effective length of query: 119
effective length of database: 14,536,650
effective search space: 1729861350
effective search space used: 1729861350
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.