Guide to the Human Genome
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Name: LOC100290667 Sequence: fasta or formatted (355aa) NCBI GI: 239752008
Description:

PREDICTED: hypothetical protein XP_002348065

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         26           2
 C cysteine            2.5          9           2
 D aspartate           6.5         23           1
 E glutamate           4.5         16           1
 F phenylalanine       5.6         20           1
 G glycine             8.2         29           3
 H histidine           2.0          7           1
 I isoleucine          5.4         19           1
 K lysine              3.1         11           1
 L leucine            14.1         50           2
 M methionine          1.1          4           1
 N asparagine          2.3          8           1
 P proline             7.3         26           2
 Q glutamine           2.0          7           1
 R arginine            8.5         30           1
 S serine              6.5         23           2
 T threonine           4.5         16           1
 V valine              6.2         22           2
 W tryptophan          0.8          3           1
 Y tyrosine            1.7          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348065 
LOC100287002          0.784   PREDICTED: hypothetical protein XP_002343745 
LOC100292485          0.014   PREDICTED: hypothetical protein 
LOC100287491          0.014   PREDICTED: hypothetical protein 
LOC100287491          0.014   PREDICTED: hypothetical protein XP_002342841 
LOC100294080          0.014   PREDICTED: similar to RAB19, member RAS oncogene fa...
MSI2                  0.013   musashi 2 isoform a 
MSI1                  0.012   musashi 1 
LOC100292407          0.012   PREDICTED: hypothetical protein 
USH1C                 0.010   harmonin isoform b3 
CAMK2B                0.010   calcium/calmodulin-dependent protein kinase II beta ...
POU6F2                0.010   POU domain, class 6, transcription factor 2 
ZC3H13                0.010   zinc finger CCCH-type containing 13 
RGMB                  0.009   RGM domain family, member B 
MAZ                   0.009   MYC-associated zinc finger protein isoform 2 
MAZ                   0.009   MYC-associated zinc finger protein isoform 1 
LOC100292723          0.009   PREDICTED: hypothetical protein 
LOC100290128          0.009   PREDICTED: hypothetical protein XP_002346712 
LOC100288963          0.009   PREDICTED: hypothetical protein XP_002342546 
TBC1D10B              0.009   TBC1 domain family, member 10B 
SEMA6C                0.009   semaphorin Y 
NACA                  0.009   nascent polypeptide-associated complex alpha subuni...
KLHL29                0.009   PREDICTED: kelch-like 29 (Drosophila) 
LOC100133655          0.009   PREDICTED: hypothetical protein 
KLHL29                0.009   PREDICTED: kelch-like 29 (Drosophila) 
KLHL29                0.009   PREDICTED: kelch repeat and BTB (POZ) domain contai...
DGKQ                  0.009   diacylglycerol kinase, theta 
C16orf11              0.009   hypothetical protein LOC146325 
SAMD1                 0.009   sterile alpha motif domain containing 1 
LOC100291627          0.007   PREDICTED: hypothetical protein XP_002345251 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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