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Search of human proteins with 239751923
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751923 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
(114 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757365 PREDICTED: hypothetical protein isoform 2 [Homo sap... 244 1e-65
gi|239751923 PREDICTED: hypothetical protein isoform 2 [Homo sap... 244 1e-65
gi|239746413 PREDICTED: hypothetical protein XP_002343708 isofor... 244 1e-65
gi|239753758 PREDICTED: hypothetical protein LOC401106 [Homo sap... 38 0.002
gi|169166137 PREDICTED: hypothetical protein LOC401106 [Homo sap... 38 0.002
gi|169165128 PREDICTED: hypothetical protein LOC401106 [Homo sap... 38 0.002
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 33 0.049
gi|239757110 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|186928827 dermokine isoform 5 precursor [Homo sapiens] 28 1.2
gi|186928825 dermokine isoform 3 precursor [Homo sapiens] 28 1.2
gi|27151736 DnaJ (Hsp40) homolog, subfamily B, member 2 isoform ... 28 1.2
gi|145309328 papilin [Homo sapiens] 28 1.2
gi|118402590 myosin XV [Homo sapiens] 28 1.6
gi|169215350 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|169169586 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|116268095 spermatid maturation 1 [Homo sapiens] 28 1.6
gi|21281675 growth arrest-specific 2 like 2 [Homo sapiens] 28 1.6
gi|56549696 E1A binding protein p400 [Homo sapiens] 28 2.0
gi|7661864 USP6 N-terminal like isoform 1 [Homo sapiens] 27 2.7
gi|122937432 USP6 N-terminal like isoform 2 [Homo sapiens] 27 2.7
gi|4758216 dishevelled 2 [Homo sapiens] 27 2.7
gi|209364594 acyl-Coenzyme A binding domain containing 4 isoform... 27 2.7
gi|209364589 acyl-Coenzyme A binding domain containing 4 isoform... 27 2.7
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 27 3.5
gi|123701326 zinc finger protein 831 [Homo sapiens] 27 3.5
gi|4758472 G protein pathway suppressor 2 [Homo sapiens] 27 4.6
gi|239756943 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6
gi|239751443 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6
gi|239745948 PREDICTED: hypothetical protein XP_002343622 [Homo ... 27 4.6
gi|150170670 piccolo isoform 2 [Homo sapiens] 27 4.6
>gi|239757365 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 114
Score = 244 bits (622), Expect = 1e-65
Identities = 114/114 (100%), Positives = 114/114 (100%)
Query: 1 MAEVEAADVLSLQLGKDLLQALPEALTWVHHQHPGPRAQHRVRQGHPPAMRVDPGCWAAQ 60
MAEVEAADVLSLQLGKDLLQALPEALTWVHHQHPGPRAQHRVRQGHPPAMRVDPGCWAAQ
Sbjct: 1 MAEVEAADVLSLQLGKDLLQALPEALTWVHHQHPGPRAQHRVRQGHPPAMRVDPGCWAAQ 60
Query: 61 LGQPQPHTQGWNGLGSQHKEGSRLPGTQARRVTQLSLQGPCRLAGPGIQLTKGD 114
LGQPQPHTQGWNGLGSQHKEGSRLPGTQARRVTQLSLQGPCRLAGPGIQLTKGD
Sbjct: 61 LGQPQPHTQGWNGLGSQHKEGSRLPGTQARRVTQLSLQGPCRLAGPGIQLTKGD 114
>gi|239751923 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 114
Score = 244 bits (622), Expect = 1e-65
Identities = 114/114 (100%), Positives = 114/114 (100%)
Query: 1 MAEVEAADVLSLQLGKDLLQALPEALTWVHHQHPGPRAQHRVRQGHPPAMRVDPGCWAAQ 60
MAEVEAADVLSLQLGKDLLQALPEALTWVHHQHPGPRAQHRVRQGHPPAMRVDPGCWAAQ
Sbjct: 1 MAEVEAADVLSLQLGKDLLQALPEALTWVHHQHPGPRAQHRVRQGHPPAMRVDPGCWAAQ 60
Query: 61 LGQPQPHTQGWNGLGSQHKEGSRLPGTQARRVTQLSLQGPCRLAGPGIQLTKGD 114
LGQPQPHTQGWNGLGSQHKEGSRLPGTQARRVTQLSLQGPCRLAGPGIQLTKGD
Sbjct: 61 LGQPQPHTQGWNGLGSQHKEGSRLPGTQARRVTQLSLQGPCRLAGPGIQLTKGD 114
>gi|239746413 PREDICTED: hypothetical protein XP_002343708 isoform 2
[Homo sapiens]
Length = 114
Score = 244 bits (622), Expect = 1e-65
Identities = 114/114 (100%), Positives = 114/114 (100%)
Query: 1 MAEVEAADVLSLQLGKDLLQALPEALTWVHHQHPGPRAQHRVRQGHPPAMRVDPGCWAAQ 60
MAEVEAADVLSLQLGKDLLQALPEALTWVHHQHPGPRAQHRVRQGHPPAMRVDPGCWAAQ
Sbjct: 1 MAEVEAADVLSLQLGKDLLQALPEALTWVHHQHPGPRAQHRVRQGHPPAMRVDPGCWAAQ 60
Query: 61 LGQPQPHTQGWNGLGSQHKEGSRLPGTQARRVTQLSLQGPCRLAGPGIQLTKGD 114
LGQPQPHTQGWNGLGSQHKEGSRLPGTQARRVTQLSLQGPCRLAGPGIQLTKGD
Sbjct: 61 LGQPQPHTQGWNGLGSQHKEGSRLPGTQARRVTQLSLQGPCRLAGPGIQLTKGD 114
>gi|239753758 PREDICTED: hypothetical protein LOC401106 [Homo
sapiens]
Length = 297
Score = 37.7 bits (86), Expect = 0.002
Identities = 23/51 (45%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 18 LLQALPEALTWVHHQHPGPRAQHRVRQGHPPAMRVDPGCWAAQLGQPQPHT 68
L Q P+ALT +HQ PGP A R RQ P P WA L P P T
Sbjct: 39 LPQDFPKALT-TNHQAPGPHA--RPRQAARPPQAFAPTAWAPALASPAPDT 86
>gi|169166137 PREDICTED: hypothetical protein LOC401106 [Homo
sapiens]
Length = 297
Score = 37.7 bits (86), Expect = 0.002
Identities = 23/51 (45%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 18 LLQALPEALTWVHHQHPGPRAQHRVRQGHPPAMRVDPGCWAAQLGQPQPHT 68
L Q P+ALT +HQ PGP A R RQ P P WA L P P T
Sbjct: 39 LPQDFPKALT-TNHQAPGPHA--RPRQAARPPQAFAPTAWAPALASPAPDT 86
>gi|169165128 PREDICTED: hypothetical protein LOC401106 [Homo
sapiens]
Length = 297
Score = 37.7 bits (86), Expect = 0.002
Identities = 23/51 (45%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 18 LLQALPEALTWVHHQHPGPRAQHRVRQGHPPAMRVDPGCWAAQLGQPQPHT 68
L Q P+ALT +HQ PGP A R RQ P P WA L P P T
Sbjct: 39 LPQDFPKALT-TNHQAPGPHA--RPRQAARPPQAFAPTAWAPALASPAPDT 86
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 33.1 bits (74), Expect = 0.049
Identities = 24/64 (37%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 30 HHQHPGPRAQ---HRVRQGHPPAMRV-----DPGCWAAQLGQPQPHTQGWNGLGSQHKEG 81
HH H P Q H HPP M DP A LG PQP +GW G G G
Sbjct: 1003 HHHHHAPPPQPHHHHAHPPHPPEMETGGSPDDPPPRLA-LG-PQPSLRGWRGGGPSPTPG 1060
Query: 82 SRLP 85
+ P
Sbjct: 1061 APSP 1064
>gi|239757110 PREDICTED: hypothetical protein [Homo sapiens]
Length = 192
Score = 30.8 bits (68), Expect = 0.24
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 8/54 (14%)
Query: 33 HP---GPRAQHRVRQGHPPAMRVDPGCWAAQLGQ----PQPHTQGW-NGLGSQH 78
HP GP + R G P R P W + + P+P T W NG QH
Sbjct: 11 HPTPGGPASARRAHSGRPHQARRHPAAWGLPVRRPSHPPRPTTSSWANGSNRQH 64
>gi|186928827 dermokine isoform 5 precursor [Homo sapiens]
Length = 398
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 45 GHPPAMRVDPGC---WAAQLGQPQPHTQGWNGLGSQHKEGSRLPGTQARRVTQLSLQG 99
G+ R D G W + G + G +G G+ HK G PG +AR + +QG
Sbjct: 291 GNSGGSRGDSGSESSWGSSTGSSSGN-HGGSGGGNGHKPGCEKPGNEARGSGESGIQG 347
>gi|186928825 dermokine isoform 3 precursor [Homo sapiens]
Length = 416
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 45 GHPPAMRVDPGC---WAAQLGQPQPHTQGWNGLGSQHKEGSRLPGTQARRVTQLSLQG 99
G+ R D G W + G + G +G G+ HK G PG +AR + +QG
Sbjct: 291 GNSGGSRGDSGSESSWGSSTGSSSGN-HGGSGGGNGHKPGCEKPGNEARGSGESGIQG 347
>gi|27151736 DnaJ (Hsp40) homolog, subfamily B, member 2 isoform b
[Homo sapiens]
Length = 324
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/28 (53%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 35 GPRAQHRVRQGHPPAMRVDPGCWAAQLG 62
G AQHR RQG P A DPG Q G
Sbjct: 276 GREAQHR-RQGRPKAQHQDPGLGGTQEG 302
>gi|145309328 papilin [Homo sapiens]
Length = 1251
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 28 WVHHQHPGPRAQHRVRQGHPPAMRVDPGCWAAQLGQPQPHTQ 69
W +HP R HR +G P R D G + LG P P Q
Sbjct: 549 WAAQEHPSARGDHRGERGDP---RGDQGTHLSALG-PAPSLQ 586
>gi|118402590 myosin XV [Homo sapiens]
Length = 3530
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 39 QHRVRQGHPPAMRVDPGCWAAQLGQPQPHTQGWNGLGSQHKEGSRLPGTQARR 91
Q R G P A+R D G + +P PH + L Q + PGTQ R
Sbjct: 2584 QQPFRGGRPEALRKDGG--KVFMKRPDPHEEALMILKGQMTHLAAAPGTQVSR 2634
>gi|169215350 PREDICTED: hypothetical protein [Homo sapiens]
Length = 707
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 23 PEALTWV--HHQHPGPRAQHRVRQGHPPAMRVDPGCWAAQLGQPQPHTQ 69
P+ L W H P PR Q R PP RV P C ++ P P Q
Sbjct: 487 PQILLWAPRHVSSPPPRVQPPCRVSSPPP-RVQPPC---RVSSPLPRVQ 531
>gi|169169586 PREDICTED: hypothetical protein [Homo sapiens]
Length = 251
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 65 QPHTQGWNGLGSQ--HKEGSRLPGTQ 88
+PH QG G G Q H+ SR PGT+
Sbjct: 5 RPHQQGGGGGGGQGRHRHSSRAPGTR 30
>gi|116268095 spermatid maturation 1 [Homo sapiens]
Length = 309
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 15/67 (22%)
Query: 34 PGPRAQHRVRQGHPPAMRVDPGCWAAQLGQPQPH------------TQGWNGLGSQHKEG 81
P P +HR R+G P P WA +PH + W G QH +G
Sbjct: 106 PPPAHRHR-RRGSPTRCAHCPVAWAPDTDDEKPHQYPAICSYHWDVPEDWEGF--QHTQG 162
Query: 82 SRLPGTQ 88
+ +P +Q
Sbjct: 163 TWVPWSQ 169
>gi|21281675 growth arrest-specific 2 like 2 [Homo sapiens]
Length = 880
Score = 28.1 bits (61), Expect = 1.6
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 28 WVHHQHPGPRAQHRVRQGHPPAMRVDPGCW-AAQLGQPQPHTQGWNGLGSQHKEGSRLPG 86
W P +A + QG P ++VD W AA G P+P G + K G+R G
Sbjct: 644 WPEPGGPYDKAIQELAQGSPSLLKVDLEAWKAAPTGSPKPAVTPGPG-SLKGKLGARQSG 702
Query: 87 TQARRVTQLSLQG 99
+ + LS +G
Sbjct: 703 PRTK--ASLSAKG 713
>gi|56549696 E1A binding protein p400 [Homo sapiens]
Length = 3122
Score = 27.7 bits (60), Expect = 2.0
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 13/93 (13%)
Query: 31 HQHPGPRAQHRVRQGHPPAMRVDPGCWAAQLGQPQP------HTQGWNGLGSQ----HKE 80
HQ P + HP +R A+ GQP P H G + L + +
Sbjct: 1499 HQ-PASASSTAASPAHPAKLRAQTTAQASTPGQPPPQPQAPSHAAGQSALPQRLVLPSQA 1557
Query: 81 GSRLPGTQARRVTQL-SLQGP-CRLAGPGIQLT 111
+RLP + ++ QL S+ GP R+A P +T
Sbjct: 1558 QARLPSGEVVKIAQLASITGPQSRVAQPETPVT 1590
>gi|7661864 USP6 N-terminal like isoform 1 [Homo sapiens]
Length = 828
Score = 27.3 bits (59), Expect = 2.7
Identities = 24/88 (27%), Positives = 31/88 (35%), Gaps = 23/88 (26%)
Query: 16 KDLLQALPEALTW-VHHQHPGPRAQHRVRQGHPPAMRVDPGCWAAQLGQPQPHTQGWNGL 74
K L Q PE +W VHH G R+ +G+P P G
Sbjct: 368 KPLGQLPPELQSWGVHHLSNGQRS----------------------VGRPSPLASGRRES 405
Query: 75 GSQHKEGSRLPGTQARRVTQLSLQGPCR 102
G+ H+ P Q+R T Q P R
Sbjct: 406 GAPHRRHEHSPHPQSRTGTPERAQPPRR 433
>gi|122937432 USP6 N-terminal like isoform 2 [Homo sapiens]
Length = 845
Score = 27.3 bits (59), Expect = 2.7
Identities = 24/88 (27%), Positives = 31/88 (35%), Gaps = 23/88 (26%)
Query: 16 KDLLQALPEALTW-VHHQHPGPRAQHRVRQGHPPAMRVDPGCWAAQLGQPQPHTQGWNGL 74
K L Q PE +W VHH G R+ +G+P P G
Sbjct: 385 KPLGQLPPELQSWGVHHLSNGQRS----------------------VGRPSPLASGRRES 422
Query: 75 GSQHKEGSRLPGTQARRVTQLSLQGPCR 102
G+ H+ P Q+R T Q P R
Sbjct: 423 GAPHRRHEHSPHPQSRTGTPERAQPPRR 450
>gi|4758216 dishevelled 2 [Homo sapiens]
Length = 736
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 20/77 (25%)
Query: 16 KDLLQALPEALTW-----VHHQHPGPRAQHRVRQGHPPAMRVDPGCWAAQLGQPQPHTQG 70
+D L LP A W +Q+P P HP + + P + +T G
Sbjct: 533 QDTLAPLPGATPWPLLPTFSYQYPAP---------HPYSPQPPP------YHELSSYTYG 577
Query: 71 WNGLGSQHKEGSRLPGT 87
SQH EGSR G+
Sbjct: 578 GGSASSQHSEGSRSSGS 594
>gi|209364594 acyl-Coenzyme A binding domain containing 4 isoform 1
[Homo sapiens]
Length = 341
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 8/75 (10%)
Query: 34 PGPRAQHRVRQGHPPAMRVDPGCWAAQLG--QPQPHTQGWNGLGS-QHKEGSRLPGT--- 87
P P + V PP + PG W + + W G S QH E S +PGT
Sbjct: 165 PSPASLWAVTLPTPPQSPIHPGTWTPRFSVIPWSSWSLSWFGQSSGQHLEESVIPGTAPC 224
Query: 88 --QARRVTQLSLQGP 100
Q +R + +GP
Sbjct: 225 PPQRKRGCGAARRGP 239
>gi|209364589 acyl-Coenzyme A binding domain containing 4 isoform 1
[Homo sapiens]
Length = 341
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 8/75 (10%)
Query: 34 PGPRAQHRVRQGHPPAMRVDPGCWAAQLG--QPQPHTQGWNGLGS-QHKEGSRLPGT--- 87
P P + V PP + PG W + + W G S QH E S +PGT
Sbjct: 165 PSPASLWAVTLPTPPQSPIHPGTWTPRFSVIPWSSWSLSWFGQSSGQHLEESVIPGTAPC 224
Query: 88 --QARRVTQLSLQGP 100
Q +R + +GP
Sbjct: 225 PPQRKRGCGAARRGP 239
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 8/61 (13%)
Query: 31 HQHPGPRAQHRVRQGHPPAMRVDPGCWAAQLG--------QPQPHTQGWNGLGSQHKEGS 82
H G RA+ R + P + PG + G P PH + W+ S K S
Sbjct: 451 HGGHGKRAKERPPRARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRS 510
Query: 83 R 83
R
Sbjct: 511 R 511
>gi|123701326 zinc finger protein 831 [Homo sapiens]
Length = 1677
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 45 GHPPAMRVDPGCWAAQLGQPQPHTQGWNGLG-SQHKEGSRLPGTQARRVTQ 94
G P + PG + L +PQ GW L S H SR T++ TQ
Sbjct: 1121 GPDPCSPLQPGSFLTALTRPQGVPPGWPELALSSHSGTSRSHSTRSPHSTQ 1171
>gi|4758472 G protein pathway suppressor 2 [Homo sapiens]
Length = 327
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/58 (29%), Positives = 24/58 (41%)
Query: 31 HQHPGPRAQHRVRQGHPPAMRVDPGCWAAQLGQPQPHTQGWNGLGSQHKEGSRLPGTQ 88
+Q G +R HP A+ PG A+ Q G +G + + G RLP Q
Sbjct: 260 NQQTGFSDSSSLRPMHPQALHPAPGLLASPQLPVQMQPAGKSGFAATSQPGPRLPFIQ 317
>gi|239756943 PREDICTED: hypothetical protein [Homo sapiens]
Length = 783
Score = 26.6 bits (57), Expect = 4.6
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 25 ALTWVHHQHPGPRAQHRVRQGHPPAMRVDPGCWAAQLGQPQPHTQGWNGLGSQHKEGSRL 84
ALTW P R+ Q R G A + +P P GW+G +G L
Sbjct: 491 ALTWDSPPAPLQRSVWGQLQPQAGGGRGWEGRGAGRWARPGP---GWDGGARAGTQGLPL 547
Query: 85 PGTQA 89
PGT+A
Sbjct: 548 PGTEA 552
>gi|239751443 PREDICTED: hypothetical protein [Homo sapiens]
Length = 783
Score = 26.6 bits (57), Expect = 4.6
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 25 ALTWVHHQHPGPRAQHRVRQGHPPAMRVDPGCWAAQLGQPQPHTQGWNGLGSQHKEGSRL 84
ALTW P R+ Q R G A + +P P GW+G +G L
Sbjct: 491 ALTWDSPPAPLQRSVWGQLQPQAGGGRGWEGRGAGRWARPGP---GWDGGARAGTQGLPL 547
Query: 85 PGTQA 89
PGT+A
Sbjct: 548 PGTEA 552
>gi|239745948 PREDICTED: hypothetical protein XP_002343622 [Homo
sapiens]
Length = 791
Score = 26.6 bits (57), Expect = 4.6
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 25 ALTWVHHQHPGPRAQHRVRQGHPPAMRVDPGCWAAQLGQPQPHTQGWNGLGSQHKEGSRL 84
ALTW P R+ Q R G A + +P P GW+G +G L
Sbjct: 499 ALTWDSPPAPLQRSVWGQLQPQAGGGRGWEGRGAGRWARPGP---GWDGGARAGTQGLPL 555
Query: 85 PGTQA 89
PGT+A
Sbjct: 556 PGTEA 560
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 26.6 bits (57), Expect = 4.6
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 12 LQLGKDLLQALPEALTWVHHQHPGPRAQHRVRQGHPPAMR-VDPGCWAAQLGQPQPHTQG 70
L+ G L + LPE L H P + Q ++ Q + M + P + HT
Sbjct: 4453 LENGHGLDRKLPERLV---HSRPLSQHQEQIIQMNGKTMHYIFPHARIKITRDSKDHTVS 4509
Query: 71 WNGLGSQHKEGSRLPG 86
NGLG + G +PG
Sbjct: 4510 GNGLGIRIVGGKEIPG 4525
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,686,231
Number of Sequences: 37866
Number of extensions: 301867
Number of successful extensions: 848
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 824
Number of HSP's gapped (non-prelim): 60
length of query: 114
length of database: 18,247,518
effective HSP length: 84
effective length of query: 30
effective length of database: 15,066,774
effective search space: 452003220
effective search space used: 452003220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.