Guide to the Human Genome
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Name: C15orf27 Sequence: fasta or formatted (531aa) NCBI GI: 118442841
Description:

hypothetical protein LOC123591

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         46           2
 C cysteine            1.3          7           2
 D aspartate           4.9         26           2
 E glutamate           7.9         42           2
 F phenylalanine       3.4         18           2
 G glycine             3.8         20           2
 H histidine           1.3          7           1
 I isoleucine          6.2         33           2
 K lysine              3.2         17           1
 L leucine            10.5         56           2
 M methionine          2.3         12           1
 N asparagine          2.6         14           1
 P proline             6.8         36           3
 Q glutamine           7.2         38           3
 R arginine            4.1         22           1
 S serine             10.9         58           2
 T threonine           4.0         21           2
 V valine              8.1         43           2
 W tryptophan          1.3          7           1
 Y tyrosine            1.5          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC123591 
HVCN1                 0.056   hydrogen voltage-gated channel 1 
HVCN1                 0.056   hydrogen voltage-gated channel 1 
CACNA1I               0.024   calcium channel, voltage-dependent, T type, alpha 1I...
CACNA1I               0.024   calcium channel, voltage-dependent, T type, alpha 1I...
SCN3A                 0.020   sodium channel, voltage-gated, type III, alpha isof...
SCN3A                 0.020   sodium channel, voltage-gated, type III, alpha isof...
SCN3A                 0.020   sodium channel, voltage-gated, type III, alpha isof...
SETD1A                0.018   SET domain containing 1A 
CACNA1B               0.018   calcium channel, voltage-dependent, N type, alpha 1B ...
SCN2A                 0.017   sodium channel, voltage-gated, type II, alpha isofor...
SCN2A                 0.017   sodium channel, voltage-gated, type II, alpha isofor...
SCN2A                 0.017   sodium channel, voltage-gated, type II, alpha isofor...
SCN7A                 0.017   sodium channel, voltage-gated, type VII, alpha [Hom...
SCN4A                 0.016   voltage-gated sodium channel type 4 alpha 
BAZ2B                 0.015   bromodomain adjacent to zinc finger domain, 2B [Homo...
SCN5A                 0.015   voltage-gated sodium channel type V alpha isoform f...
SCN5A                 0.015   voltage-gated sodium channel type V alpha isoform e...
SCN5A                 0.015   voltage-gated sodium channel type V alpha isoform a ...
SCN5A                 0.015   voltage-gated sodium channel type V alpha isoform b ...
SCN5A                 0.015   voltage-gated sodium channel type V alpha isoform d...
SCN5A                 0.015   voltage-gated sodium channel type V alpha isoform c...
CACNA1G               0.015   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.015   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.015   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.015   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.015   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.015   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.015   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.015   voltage-dependent calcium channel alpha 1G subunit i...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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