Guide to the Human Genome
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Name: LOC100289492 Sequence: fasta or formatted (201aa) NCBI GI: 239751780
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {201aa} PREDICTED: hypothetical protein XP_002343721
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         18           3
 C cysteine            2.0          4           1
 D aspartate           1.5          3           1
 E glutamate           2.5          5           1
 F phenylalanine       3.0          6           1
 G glycine            10.9         22           4
 H histidine           2.0          4           1
 I isoleucine          1.0          2           1
 K lysine              1.0          2           1
 L leucine            11.4         23           2
 M methionine          2.0          4           1
 N asparagine          2.0          4           1
 P proline            14.4         29           7
 Q glutamine           4.0          8           1
 R arginine           10.0         20           2
 S serine             11.4         23           2
 T threonine           3.5          7           1
 V valine              6.0         12           2
 W tryptophan          2.0          4           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100293535          1.000   PREDICTED: hypothetical protein 
LOC100289492          1.000   PREDICTED: hypothetical protein XP_002343721 
HTT                   0.053   huntingtin 
WASF3                 0.053   WAS protein family, member 3 
WIPF3                 0.051   WAS/WASL interacting protein family, member 3 [Homo...
FOXD1                 0.051   forkhead box D1 
ENAH                  0.051   enabled homolog isoform a 
ENAH                  0.051   enabled homolog isoform b 
PELP1                 0.051   proline, glutamic acid and leucine rich protein 1 [...
MYPOP                 0.048   Myb protein P42POP 
FMNL2                 0.048   formin-like 2 
WIPF1                 0.048   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.048   WAS/WASL interacting protein family, member 1 
WASL                  0.046   Wiskott-Aldrich syndrome gene-like protein 
ZFHX4                 0.046   zinc finger homeodomain 4 
SMARCA4               0.046   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.046   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.046   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.046   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.046   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.046   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.046   SWI/SNF-related matrix-associated actin-dependent re...
LOC100292845          0.046   PREDICTED: hypothetical protein 
LOC100289230          0.046   PREDICTED: hypothetical protein XP_002342600 
FHDC1                 0.046   FH2 domain containing 1 
PRB3                  0.046   proline-rich protein BstNI subfamily 3 precursor [H...
ZCCHC2                0.043   zinc finger, CCHC domain containing 2 
ZNF341                0.043   zinc finger protein 341 
WASF1                 0.043   Wiskott-Aldrich syndrome protein family member 1 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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