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Search of human proteins with 239751010
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751010 PREDICTED: hypothetical protein [Homo sapiens]
(220 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751010 PREDICTED: hypothetical protein [Homo sapiens] 468 e-132
gi|38788260 bromodomain PHD finger transcription factor isoform ... 39 0.005
gi|38788274 bromodomain PHD finger transcription factor isoform ... 39 0.005
gi|239755776 PREDICTED: similar to Mucin-19 [Homo sapiens] 36 0.029
gi|239750277 PREDICTED: hypothetical protein XP_002347351 [Homo ... 36 0.029
gi|239744587 PREDICTED: hypothetical protein XP_002343203 [Homo ... 36 0.029
gi|169164483 PREDICTED: hypothetical protein [Homo sapiens] 35 0.038
gi|113414226 PREDICTED: hypothetical protein [Homo sapiens] 35 0.038
gi|113413437 PREDICTED: hypothetical protein [Homo sapiens] 35 0.038
gi|4758156 diacylglycerol kinase, iota [Homo sapiens] 35 0.038
gi|39652628 oxidative stress-associated Src activator [Homo sapi... 35 0.066
gi|27262638 sperm associated antigen 1 [Homo sapiens] 35 0.066
gi|27262636 sperm associated antigen 1 [Homo sapiens] 35 0.066
gi|222831660 family with sequence similarity 171, member A2 [Hom... 34 0.086
gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3... 34 0.086
gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1... 34 0.086
gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4... 34 0.086
gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [... 34 0.086
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 34 0.086
gi|239741753 PREDICTED: hypothetical protein [Homo sapiens] 33 0.15
gi|88501741 TRIO and F-actin binding protein isoform 2 [Homo sap... 33 0.15
gi|88501740 TRIO and F-actin binding protein isoform 1 [Homo sap... 33 0.15
gi|148886716 downstream of Stk11 [Homo sapiens] 33 0.15
gi|40805843 K(lysine) acetyltransferase 2B [Homo sapiens] 33 0.19
gi|26051271 voltage-gated potassium channel, subfamily H, member... 33 0.19
gi|4557729 voltage-gated potassium channel, subfamily H, member ... 33 0.19
gi|5902104 SRY (sex determining region Y)-box 10 [Homo sapiens] 33 0.19
gi|55956910 meningioma 1 [Homo sapiens] 33 0.19
gi|116256363 transmembrane protease, serine 13 [Homo sapiens] 33 0.19
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 33 0.25
>gi|239751010 PREDICTED: hypothetical protein [Homo sapiens]
Length = 220
Score = 468 bits (1205), Expect = e-132
Identities = 220/220 (100%), Positives = 220/220 (100%)
Query: 1 MAGESVSTRGQIFARWRGHPCALPPSSSTSPRALSPGSSNKVTLDWGGGSTTLFSGPKLG 60
MAGESVSTRGQIFARWRGHPCALPPSSSTSPRALSPGSSNKVTLDWGGGSTTLFSGPKLG
Sbjct: 1 MAGESVSTRGQIFARWRGHPCALPPSSSTSPRALSPGSSNKVTLDWGGGSTTLFSGPKLG 60
Query: 61 WYLGEFLGTQCVCAISTLGDPGDSSHSRGGRWGVGGGGGAALWRQRTVEAGCSPVGCALS 120
WYLGEFLGTQCVCAISTLGDPGDSSHSRGGRWGVGGGGGAALWRQRTVEAGCSPVGCALS
Sbjct: 61 WYLGEFLGTQCVCAISTLGDPGDSSHSRGGRWGVGGGGGAALWRQRTVEAGCSPVGCALS 120
Query: 121 AEKDFLRSPPITWISSGEGRIFFLEVPFFSTVEDLRLGSNRGGGCRARGAPPARRTPARS 180
AEKDFLRSPPITWISSGEGRIFFLEVPFFSTVEDLRLGSNRGGGCRARGAPPARRTPARS
Sbjct: 121 AEKDFLRSPPITWISSGEGRIFFLEVPFFSTVEDLRLGSNRGGGCRARGAPPARRTPARS 180
Query: 181 PGRRSPGWGGPCTPGGGSGGECSPSSRLAPSASQGRDRGR 220
PGRRSPGWGGPCTPGGGSGGECSPSSRLAPSASQGRDRGR
Sbjct: 181 PGRRSPGWGGPCTPGGGSGGECSPSSRLAPSASQGRDRGR 220
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 38.5 bits (88), Expect = 0.005
Identities = 22/47 (46%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 156 RLGSNRGGGCRARGAPPARRTP--ARSPGRRSPGWGGPCTPGGGSGG 200
RL S RGG R PP P +PGR G GG T GGG GG
Sbjct: 63 RLSSPRGGSSSRRKPPPPPPAPPSTSAPGRGGRGGGGGRTGGGGGGG 109
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 38.5 bits (88), Expect = 0.005
Identities = 22/47 (46%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 156 RLGSNRGGGCRARGAPPARRTP--ARSPGRRSPGWGGPCTPGGGSGG 200
RL S RGG R PP P +PGR G GG T GGG GG
Sbjct: 63 RLSSPRGGSSSRRKPPPPPPAPPSTSAPGRGGRGGGGGRTGGGGGGG 109
>gi|239755776 PREDICTED: similar to Mucin-19 [Homo sapiens]
Length = 1950
Score = 35.8 bits (81), Expect = 0.029
Identities = 44/179 (24%), Positives = 64/179 (35%), Gaps = 11/179 (6%)
Query: 24 PPSSSTSPRALSPGSSNKVTLDWGGGSTTLFSGPKLGWYLGEFLGTQCVCAISTLGDPGD 83
PP T P SPG + T +WG +TT +G LG T+ +T G+
Sbjct: 1718 PPGKLTRPSPGSPGHFSGGTTEWGNVATTGAAGENTSGALG---STEGSVEATTSAGSGN 1774
Query: 84 SSHSRGGRWGVGGGGGAALWRQRTVEAGCSP--VGCALSAEKDFLRSPPITWISSGEGRI 141
++ + G G G G A+ V G +P G + E D + SG +
Sbjct: 1775 TAGTSG--TGDTGPGNTAVSGTPVVSPGATPGAPGSSTPGEADIGNTSFGKSGKSGHDSL 1832
Query: 142 FFLEVPFFSTVEDLRLGSNRGGGCRARGAPPARRTPARSPGRRSPGWGGPCTPGGGSGG 200
L F + S ++ A T G + G P TPGG + G
Sbjct: 1833 TVLNPAFLRRTPTVSAASTTSSPV-SKHTDAASATAVTISGSKP---GTPGTPGGATSG 1887
>gi|239750277 PREDICTED: hypothetical protein XP_002347351 [Homo
sapiens]
Length = 2134
Score = 35.8 bits (81), Expect = 0.029
Identities = 44/179 (24%), Positives = 64/179 (35%), Gaps = 11/179 (6%)
Query: 24 PPSSSTSPRALSPGSSNKVTLDWGGGSTTLFSGPKLGWYLGEFLGTQCVCAISTLGDPGD 83
PP T P SPG + T +WG +TT +G LG T+ +T G+
Sbjct: 1902 PPGKLTRPSPGSPGHFSGGTTEWGNVATTGAAGENTSGALG---STEGSVEATTSAGSGN 1958
Query: 84 SSHSRGGRWGVGGGGGAALWRQRTVEAGCSP--VGCALSAEKDFLRSPPITWISSGEGRI 141
++ + G G G G A+ V G +P G + E D + SG +
Sbjct: 1959 TAGTSG--TGDTGPGNTAVSGTPVVSPGATPGAPGSSTPGEADIGNTSFGKSGKSGHDSL 2016
Query: 142 FFLEVPFFSTVEDLRLGSNRGGGCRARGAPPARRTPARSPGRRSPGWGGPCTPGGGSGG 200
L F + S ++ A T G + G P TPGG + G
Sbjct: 2017 TVLNPAFLRRTPTVSAASTTSSPV-SKHTDAASATAVTISGSKP---GTPGTPGGATSG 2071
>gi|239744587 PREDICTED: hypothetical protein XP_002343203 [Homo
sapiens]
Length = 2134
Score = 35.8 bits (81), Expect = 0.029
Identities = 44/179 (24%), Positives = 64/179 (35%), Gaps = 11/179 (6%)
Query: 24 PPSSSTSPRALSPGSSNKVTLDWGGGSTTLFSGPKLGWYLGEFLGTQCVCAISTLGDPGD 83
PP T P SPG + T +WG +TT +G LG T+ +T G+
Sbjct: 1902 PPGKLTRPSPGSPGHFSGGTTEWGNVATTGAAGENTSGALG---STEGSVEATTSAGSGN 1958
Query: 84 SSHSRGGRWGVGGGGGAALWRQRTVEAGCSP--VGCALSAEKDFLRSPPITWISSGEGRI 141
++ + G G G G A+ V G +P G + E D + SG +
Sbjct: 1959 TAGTSG--TGDTGPGNTAVSGTPVVSPGATPGAPGSSTPGEADIGNTSFGKSGKSGHDSL 2016
Query: 142 FFLEVPFFSTVEDLRLGSNRGGGCRARGAPPARRTPARSPGRRSPGWGGPCTPGGGSGG 200
L F + S ++ A T G + G P TPGG + G
Sbjct: 2017 TVLNPAFLRRTPTVSAASTTSSPV-SKHTDAASATAVTISGSKP---GTPGTPGGATSG 2071
>gi|169164483 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 35.4 bits (80), Expect = 0.038
Identities = 23/55 (41%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 164 GCRARGAPPARRTPARSPGR--RSPGWGGPCTPGGGSGGECSPSSRLAPSASQGR 216
G R GAPP+RRTP P R RSP G TP L P AS R
Sbjct: 196 GPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTTR 250
>gi|113414226 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 35.4 bits (80), Expect = 0.038
Identities = 23/55 (41%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 164 GCRARGAPPARRTPARSPGR--RSPGWGGPCTPGGGSGGECSPSSRLAPSASQGR 216
G R GAPP+RRTP P R RSP G TP L P AS R
Sbjct: 196 GPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTTR 250
>gi|113413437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 35.4 bits (80), Expect = 0.038
Identities = 23/55 (41%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 164 GCRARGAPPARRTPARSPGR--RSPGWGGPCTPGGGSGGECSPSSRLAPSASQGR 216
G R GAPP+RRTP P R RSP G TP L P AS R
Sbjct: 196 GPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTTR 250
>gi|4758156 diacylglycerol kinase, iota [Homo sapiens]
Length = 1065
Score = 35.4 bits (80), Expect = 0.038
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 162 GGGCRARGAPPARRTPARSPGRRSPGWGGPCTPGGGSGGECSPSSR-----LAPSASQGR 216
G GC P AR PAR+P + P PG SG C+PS+ + PS+S G
Sbjct: 5 GRGCHLLPLPAARG-PARAPAAAAAAAASP--PGPCSGAACAPSAAAGAGAMNPSSSAGE 61
Query: 217 DRG 219
++G
Sbjct: 62 EKG 64
>gi|39652628 oxidative stress-associated Src activator [Homo
sapiens]
Length = 1118
Score = 34.7 bits (78), Expect = 0.066
Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 16/104 (15%)
Query: 25 PSSSTSPR----ALSPGSSNKVTLD---WGGGSTTLFSGPKLGWYLGEFLGTQCVCAIST 77
P+ S SP A PGSS + D GG+T SG K+GW E G+
Sbjct: 439 PAQSGSPNHVDSAYFPGSSTSSSSDNDEGSGGATNHISGNKIGW---EKTGSH--SEPQA 493
Query: 78 LGDPGDSSHSRGGRWGVGGGGGAALWRQRTVEAG-CSPVGCALS 120
GDPGD + + G G+ L + + G P+ C LS
Sbjct: 494 RGDPGDQTKAEGSS---TASSGSQLAEGKGSQMGTVQPIPCLLS 534
>gi|27262638 sperm associated antigen 1 [Homo sapiens]
Length = 926
Score = 34.7 bits (78), Expect = 0.066
Identities = 21/53 (39%), Positives = 23/53 (43%), Gaps = 9/53 (16%)
Query: 158 GSNRGGGCRARGAPPARRTPARSPGRRSP---------GWGGPCTPGGGSGGE 201
G GG ARGAP +TP +RSP G G PGGG G E
Sbjct: 391 GKAEGGKRPARGAPQRGQTPEAGADKRSPRRASAAAAAGGGATGHPGGGQGAE 443
>gi|27262636 sperm associated antigen 1 [Homo sapiens]
Length = 926
Score = 34.7 bits (78), Expect = 0.066
Identities = 21/53 (39%), Positives = 23/53 (43%), Gaps = 9/53 (16%)
Query: 158 GSNRGGGCRARGAPPARRTPARSPGRRSP---------GWGGPCTPGGGSGGE 201
G GG ARGAP +TP +RSP G G PGGG G E
Sbjct: 391 GKAEGGKRPARGAPQRGQTPEAGADKRSPRRASAAAAAGGGATGHPGGGQGAE 443
>gi|222831660 family with sequence similarity 171, member A2 [Homo
sapiens]
Length = 826
Score = 34.3 bits (77), Expect = 0.086
Identities = 26/65 (40%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 155 LRLGSNRGG-GCRARGAPP-------ARRTPARSPGR-RSPGWGGPCTPGGGSGGECSPS 205
+RLG G G APP AR P P R + PG GP GGG GGE +
Sbjct: 547 VRLGGEAGAAGVGDEPAPPEGTAPGPARAFPQPDPQRPQMPGHSGPGGEGGGGGGEGWGA 606
Query: 206 SRLAP 210
R AP
Sbjct: 607 GRAAP 611
Score = 29.3 bits (64), Expect = 2.8
Identities = 46/164 (28%), Positives = 58/164 (35%), Gaps = 40/164 (24%)
Query: 81 PGDSSHSRGGRWGVGGGGGAALWRQRTV-----------EAGCSPVGCALSA--EKDFL- 126
PG S GG G GGG G R V E+ + + L A EK L
Sbjct: 587 PGHSGP--GGEGGGGGGEGWGAGRAAPVSGSVTIPVLFNESTMAQLNGELQALTEKKLLE 644
Query: 127 ---RSPPITWISSGEGRIFFLEVPFFSTVEDLRLGSNRGGGCRARGAP-----------P 172
+ P W S +GR S V + GGG R+ A P
Sbjct: 645 LGVKPHPRAWFVSLDGRSN-------SQVRHSYIDLQAGGGARSTDASLDSGVDVHEARP 697
Query: 173 ARRTPARSPGRRSPGWGGPCTPGGGSGGECSPSSRLAPSASQGR 216
ARR PAR R+P P P + + S PS+S+ R
Sbjct: 698 ARRRPAREERERAPPAAPPPPP---APPRLALSEDTEPSSSESR 738
>gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3
[Homo sapiens]
Length = 535
Score = 34.3 bits (77), Expect = 0.086
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 161 RGGGCRARGAPPARRTPARSPGRRSPGW---GGPCTPGGGS-GGECSPSSRLAPSASQG 215
RGGG RGAPP R P R G+ G P P GS GG P+ + S+G
Sbjct: 404 RGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRG 462
>gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1
[Homo sapiens]
Length = 636
Score = 34.3 bits (77), Expect = 0.086
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 161 RGGGCRARGAPPARRTPARSPGRRSPGW---GGPCTPGGGS-GGECSPSSRLAPSASQG 215
RGGG RGAPP R P R G+ G P P GS GG P+ + S+G
Sbjct: 505 RGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRG 563
>gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4
[Homo sapiens]
Length = 532
Score = 34.3 bits (77), Expect = 0.086
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 161 RGGGCRARGAPPARRTPARSPGRRSPGW---GGPCTPGGGS-GGECSPSSRLAPSASQG 215
RGGG RGAPP R P R G+ G P P GS GG P+ + S+G
Sbjct: 401 RGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRG 459
>gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2
[Homo sapiens]
Length = 633
Score = 34.3 bits (77), Expect = 0.086
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 161 RGGGCRARGAPPARRTPARSPGRRSPGW---GGPCTPGGGS-GGECSPSSRLAPSASQG 215
RGGG RGAPP R P R G+ G P P GS GG P+ + S+G
Sbjct: 502 RGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRG 560
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 34.3 bits (77), Expect = 0.086
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 171 PPARRTPARSPGRRSPGWGGPCTPGGGSGGECSPSSRLAPSASQGRD 217
PP TP PG R P W G G +GGE + P+ G D
Sbjct: 1265 PPLTLTPFPGPGPRRPPWEG--ADAGAAGGEAGGAGAPGPAEEDGED 1309
>gi|239741753 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 33.5 bits (75), Expect = 0.15
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 166 RARGAPPARRTPARSPGRRSPGWGGPCTPGGGSGGECSPSSRLAPSASQGRDRGR 220
RA G RR + GRR GWG PGG + + L P S +D+ R
Sbjct: 30 RAAGVESRRRAGEGAAGRRDGGWG---PPGGAGDHQTLQRASLLPGGSADKDQER 81
>gi|88501741 TRIO and F-actin binding protein isoform 2 [Homo
sapiens]
Length = 431
Score = 33.5 bits (75), Expect = 0.15
Identities = 21/47 (44%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 153 EDLRLGSNRGGGCRARGAPPARRTPARSPGRRS-----PGWGGPCTP 194
E R + RGGG G PA R+PAR P RS P WG TP
Sbjct: 17 EARRRAAERGGG-GGGGGVPAPRSPAREPRPRSCLLLPPPWGAAMTP 62
>gi|88501740 TRIO and F-actin binding protein isoform 1 [Homo
sapiens]
Length = 652
Score = 33.5 bits (75), Expect = 0.15
Identities = 21/47 (44%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 153 EDLRLGSNRGGGCRARGAPPARRTPARSPGRRS-----PGWGGPCTP 194
E R + RGGG G PA R+PAR P RS P WG TP
Sbjct: 17 EARRRAAERGGG-GGGGGVPAPRSPAREPRPRSCLLLPPPWGAAMTP 62
>gi|148886716 downstream of Stk11 [Homo sapiens]
Length = 447
Score = 33.5 bits (75), Expect = 0.15
Identities = 30/87 (34%), Positives = 35/87 (40%), Gaps = 21/87 (24%)
Query: 123 KDFLRSPPITWISSGEGRIFFLEVPFFSTVEDLRLGSNRGGGCR-ARGAPPARRTPARSP 181
+ FL SPP GR F ++ G RGG +PP RR RSP
Sbjct: 367 RPFLASPP-----PALGRYFSVD------------GGARGGPVGPCPPSPPPRRPRERSP 409
Query: 182 G---RRSPGWGGPCTPGGGSGGECSPS 205
G RSP G P GG G SP+
Sbjct: 410 GPVDTRSPASSGKAPPRGGLTGATSPA 436
>gi|40805843 K(lysine) acetyltransferase 2B [Homo sapiens]
Length = 832
Score = 33.1 bits (74), Expect = 0.19
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 163 GGCRA---RGAPPARRTPARSPGRRSPGWGGPCTPGGGSGGECSPSSRLAPSAS 213
GGC A GA P P + +P G PC G G C P++ +A + +
Sbjct: 10 GGCGAGAGAGAGPGALPPQPAALPPAPPQGSPCAAAAGGSGACGPATAVAAAGT 63
>gi|26051271 voltage-gated potassium channel, subfamily H, member 2
isoform b [Homo sapiens]
Length = 888
Score = 33.1 bits (74), Expect = 0.19
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 127 RSPPITWISSGEGRIFFLEVPFFSTVEDLRLGSNRGGGCRARGAPPA 173
R PP +W++ G + F L++P + R S R GG GAP A
Sbjct: 148 RGPPTSWLAPGRAKTFRLKLPALLAL-TARESSVRSGGAGGAGAPGA 193
>gi|4557729 voltage-gated potassium channel, subfamily H, member 2
isoform a [Homo sapiens]
Length = 1159
Score = 33.1 bits (74), Expect = 0.19
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 127 RSPPITWISSGEGRIFFLEVPFFSTVEDLRLGSNRGGGCRARGAPPA 173
R PP +W++ G + F L++P + R S R GG GAP A
Sbjct: 148 RGPPTSWLAPGRAKTFRLKLPALLAL-TARESSVRSGGAGGAGAPGA 193
>gi|5902104 SRY (sex determining region Y)-box 10 [Homo sapiens]
Length = 466
Score = 33.1 bits (74), Expect = 0.19
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 23 LPPSSSTSPRALSPGSSNKVTLDWGGGSTTLFSGPKLG 60
L P S PR LSPGS+ + D GGG + L + P G
Sbjct: 12 LSPVGSEEPRCLSPGSAPSLGPDGGGGGSGLRASPGPG 49
>gi|55956910 meningioma 1 [Homo sapiens]
Length = 1320
Score = 33.1 bits (74), Expect = 0.19
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 169 GAPPARRTPARSPGRRSP---GWGGPCTPGGGSGGECSPSSRLAPS 211
GA + TP PG SP G GG + GGG GG P PS
Sbjct: 749 GAAGRQSTPHSGPGVNSPPSAGGGGGSSGGGGGGGAYPPQPDFQPS 794
>gi|116256363 transmembrane protease, serine 13 [Homo sapiens]
Length = 567
Score = 33.1 bits (74), Expect = 0.19
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 169 GAPPARRTPARS------PGRRSPGWGGP--CTPGGGSGGECSPSSRLAPSASQGR 216
G PP R +PA++ PGR SPG P +P S SP+ +S GR
Sbjct: 48 GTPPGRASPAQASPAGTPPGRASPGRASPAQASPAQASPARASPALASLSRSSSGR 103
Score = 32.7 bits (73), Expect = 0.25
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 13/61 (21%)
Query: 169 GAPPARRTPARS-----------PGRRSPGWGGPC--TPGGGSGGECSPSSRLAPSASQG 215
G PP R +PA++ PGR SP P PG S G SP+ AS
Sbjct: 28 GTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQASPAQASPA 87
Query: 216 R 216
R
Sbjct: 88 R 88
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 32.7 bits (73), Expect = 0.25
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 156 RLGSNRGGGCRARGAPPARRTPARSPGRRSPGWGGPCTPGG-GSGGECSPSSRLAPSASQ 214
R G G R P PA PG P GGP PG G+ GE P+ P +Q
Sbjct: 334 RTGPAGAAGARGNDGQPG---PAGPPGPVGPA-GGPGFPGAPGAKGEAGPTGARGPEGAQ 389
Query: 215 G 215
G
Sbjct: 390 G 390
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.137 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,646,491
Number of Sequences: 37866
Number of extensions: 700318
Number of successful extensions: 6280
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 245
Number of HSP's that attempted gapping in prelim test: 5652
Number of HSP's gapped (non-prelim): 839
length of query: 220
length of database: 18,247,518
effective HSP length: 98
effective length of query: 122
effective length of database: 14,536,650
effective search space: 1773471300
effective search space used: 1773471300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.