Search of human proteins with 239750345

Search of human proteins with 239750345

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239750345 PREDICTED: hypothetical protein XP_002347375 [Homo
sapiens]
         (233 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755873 PREDICTED: hypothetical protein [Homo sapiens]           477   e-135
gi|239750345 PREDICTED: hypothetical protein XP_002347375 [Homo ...   477   e-135
gi|239744649 PREDICTED: hypothetical protein XP_002343213 [Homo ...   468   e-132
gi|42766424 hypothetical protein LOC389119 [Homo sapiens]              36   0.025
gi|58761508 midnolin [Homo sapiens]                                    36   0.032
gi|154146231 DMRT-like family A2 [Homo sapiens]                        34   0.094
gi|239758148 PREDICTED: similar to mucin 11 [Homo sapiens]             33   0.16 
gi|239757132 PREDICTED: hypothetical protein [Homo sapiens]            33   0.16 
gi|239752490 PREDICTED: similar to Mucin-12 [Homo sapiens]             33   0.16 
gi|5453579 bone morphogenetic protein 1 isoform 3 precursor [Hom...    33   0.21 
gi|153792575 hypothetical protein LOC90120 [Homo sapiens]              33   0.21 
gi|121114296 caudal type homeobox 1 [Homo sapiens]                     33   0.27 
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa...    32   0.36 
gi|32528301 EPH receptor B4 precursor [Homo sapiens]                   32   0.47 
gi|239749931 PREDICTED: FLJ43861 protein [Homo sapiens]                32   0.47 
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi...    32   0.61 
gi|38176300 nestin [Homo sapiens]                                      31   0.79 
gi|239757105 PREDICTED: hypothetical protein [Homo sapiens]            31   0.79 
gi|239751611 PREDICTED: hypothetical protein XP_002347929 [Homo ...    31   0.79 
gi|169177031 PREDICTED: similar to hCG30082, partial [Homo sapiens]    31   0.79 
gi|24497609 nucleoporin 62kDa [Homo sapiens]                           31   0.79 
gi|24497607 nucleoporin 62kDa [Homo sapiens]                           31   0.79 
gi|24497605 nucleoporin 62kDa [Homo sapiens]                           31   0.79 
gi|24497603 nucleoporin 62kDa [Homo sapiens]                           31   0.79 
gi|61676188 HECT, UBA and WWE domain containing 1 [Homo sapiens]       31   0.79 
gi|91208418 transcription elongation regulator 1 isoform 2 [Homo...    31   0.79 
gi|21327715 transcription elongation regulator 1 isoform 1 [Homo...    31   0.79 
gi|153946393 macrophage stimulating 1 receptor precursor [Homo s...    31   1.0  
gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens]              31   1.0  
gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens]              31   1.0  

>gi|239755873 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 577

 Score =  477 bits (1228), Expect = e-135
 Identities = 233/233 (100%), Positives = 233/233 (100%)

Query: 1   MSKAASVWMHDPPRRRSRSQPEGNQAHPRRILGMSHAAEAGVETDLAHLVSPRQEEVNHA 60
           MSKAASVWMHDPPRRRSRSQPEGNQAHPRRILGMSHAAEAGVETDLAHLVSPRQEEVNHA
Sbjct: 1   MSKAASVWMHDPPRRRSRSQPEGNQAHPRRILGMSHAAEAGVETDLAHLVSPRQEEVNHA 60

Query: 61  VGDHAAWEADELVVEAAPLPEAVPEAWGAGLHAQQLPISGLAVPGRSAPAVALACSRPFS 120
           VGDHAAWEADELVVEAAPLPEAVPEAWGAGLHAQQLPISGLAVPGRSAPAVALACSRPFS
Sbjct: 61  VGDHAAWEADELVVEAAPLPEAVPEAWGAGLHAQQLPISGLAVPGRSAPAVALACSRPFS 120

Query: 121 TPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLRES 180
           TPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLRES
Sbjct: 121 TPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLRES 180

Query: 181 SGLPFSLLAAHLAEGHEIVFHVGATNALWLVAVVSDDHGNRWVEAADTGDESP 233
           SGLPFSLLAAHLAEGHEIVFHVGATNALWLVAVVSDDHGNRWVEAADTGDESP
Sbjct: 181 SGLPFSLLAAHLAEGHEIVFHVGATNALWLVAVVSDDHGNRWVEAADTGDESP 233


>gi|239750345 PREDICTED: hypothetical protein XP_002347375 [Homo
           sapiens]
          Length = 233

 Score =  477 bits (1228), Expect = e-135
 Identities = 233/233 (100%), Positives = 233/233 (100%)

Query: 1   MSKAASVWMHDPPRRRSRSQPEGNQAHPRRILGMSHAAEAGVETDLAHLVSPRQEEVNHA 60
           MSKAASVWMHDPPRRRSRSQPEGNQAHPRRILGMSHAAEAGVETDLAHLVSPRQEEVNHA
Sbjct: 1   MSKAASVWMHDPPRRRSRSQPEGNQAHPRRILGMSHAAEAGVETDLAHLVSPRQEEVNHA 60

Query: 61  VGDHAAWEADELVVEAAPLPEAVPEAWGAGLHAQQLPISGLAVPGRSAPAVALACSRPFS 120
           VGDHAAWEADELVVEAAPLPEAVPEAWGAGLHAQQLPISGLAVPGRSAPAVALACSRPFS
Sbjct: 61  VGDHAAWEADELVVEAAPLPEAVPEAWGAGLHAQQLPISGLAVPGRSAPAVALACSRPFS 120

Query: 121 TPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLRES 180
           TPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLRES
Sbjct: 121 TPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLRES 180

Query: 181 SGLPFSLLAAHLAEGHEIVFHVGATNALWLVAVVSDDHGNRWVEAADTGDESP 233
           SGLPFSLLAAHLAEGHEIVFHVGATNALWLVAVVSDDHGNRWVEAADTGDESP
Sbjct: 181 SGLPFSLLAAHLAEGHEIVFHVGATNALWLVAVVSDDHGNRWVEAADTGDESP 233


>gi|239744649 PREDICTED: hypothetical protein XP_002343213 [Homo
           sapiens]
          Length = 232

 Score =  468 bits (1205), Expect = e-132
 Identities = 231/233 (99%), Positives = 231/233 (99%), Gaps = 1/233 (0%)

Query: 1   MSKAASVWMHDPPRRRSRSQPEGNQAHPRRILGMSHAAEAGVETDLAHLVSPRQEEVNHA 60
           MSKAASVWMHDPPRRRSRSQPEGNQAHPRRILGMSHAAEAGVETDLAHLVSPRQEEVNHA
Sbjct: 1   MSKAASVWMHDPPRRRSRSQPEGNQAHPRRILGMSHAAEAGVETDLAHLVSPRQEEVNHA 60

Query: 61  VGDHAAWEADELVVEAAPLPEAVPEAWGAGLHAQQLPISGLAVPGRSAPAVALACSRPFS 120
           VGDHAAWEADELVVEAAPLPEAVPEAWGAGLHAQQLPI  LAVPGRSAPAVALACSRPFS
Sbjct: 61  VGDHAAWEADELVVEAAPLPEAVPEAWGAGLHAQQLPIR-LAVPGRSAPAVALACSRPFS 119

Query: 121 TPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLRES 180
           TPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLRES
Sbjct: 120 TPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLRES 179

Query: 181 SGLPFSLLAAHLAEGHEIVFHVGATNALWLVAVVSDDHGNRWVEAADTGDESP 233
           SGLPFSLLAAHLAEGHEIVFHVGATNALWLVAVVSDDHGNRWVEAADTGDESP
Sbjct: 180 SGLPFSLLAAHLAEGHEIVFHVGATNALWLVAVVSDDHGNRWVEAADTGDESP 232


>gi|42766424 hypothetical protein LOC389119 [Homo sapiens]
          Length = 287

 Score = 36.2 bits (82), Expect = 0.025
 Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 12/85 (14%)

Query: 47  AHLVSPRQEEVNHAVG----DHAAWEADELVVEAAPLPEAVPEAWGAGLHAQQLPISGLA 102
           A L  PR+  ++   G      + W  +EL V   P P A P      L  Q L +SGL 
Sbjct: 82  AALGGPREHALDWDSGFSEVSGSTWREEELPVSQRPAPSAQP------LRRQCLSVSGLP 135

Query: 103 VPGRS--APAVALACSRPFSTPTSC 125
           +P R+  A    +   RP STP +C
Sbjct: 136 MPSRAPVASVPPVHHPRPKSTPDAC 160


>gi|58761508 midnolin [Homo sapiens]
          Length = 468

 Score = 35.8 bits (81), Expect = 0.032
 Identities = 39/139 (28%), Positives = 54/139 (38%), Gaps = 18/139 (12%)

Query: 37  AAEAGVETDLAHLVSPRQE-EVNHAVGDHAAWEADELVVEAAPLPEAVPEAWGAGLHAQQ 95
           A E+  ET ++  +S R    +   VGDH  +   +L  + APL            H   
Sbjct: 120 ALESLTETQVSDFLSGRSPLTLALRVGDHMMFVQLQLAAQHAPLQ-----------HRHV 168

Query: 96  LPISGLAVPGRSAPAVALACS---RPFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKT 152
           L  +  A   R  P++A   S   RP S+     P PT  S    S  T+ S R  A  T
Sbjct: 169 LAAAAAAAAARGDPSIASPVSSPCRPVSSAARVPPVPTSPSPASPSPITAGSFRSHAAST 228

Query: 153 ---KSSSTHSTWSSNHYPG 168
              +      T SS+  PG
Sbjct: 229 TCPEQMDCSPTASSSASPG 247


>gi|154146231 DMRT-like family A2 [Homo sapiens]
          Length = 542

 Score = 34.3 bits (77), Expect = 0.094
 Identities = 40/148 (27%), Positives = 57/148 (38%), Gaps = 19/148 (12%)

Query: 49  LVSPRQEEVNH-----AVGDHAAWEADELVVEAAPLPEAVPEAWGAGLHAQQLPISGLAV 103
           +V   ++ +NH     A G   A   D+  V AA    A  +AW + + A     +    
Sbjct: 343 VVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAA---AADDAWPSRVDAAAAAAAAAGG 399

Query: 104 PGRSAPAVALACSRPFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSS 163
           PG  AP  A   + P   P         + G       SLSSR      + +++H    +
Sbjct: 400 PGLPAPLQAGPAAPPHHRPLLAGAMAPGALG-------SLSSRSAFSPLQPNASHFGADA 452

Query: 164 NHYPGGCRLRAHPLRESSGLPFSLLAAH 191
             YP G  L   PLR    L +S  AAH
Sbjct: 453 GAYPLGAPLGLSPLR----LAYSAAAAH 476


>gi|239758148 PREDICTED: similar to mucin 11 [Homo sapiens]
          Length = 587

 Score = 33.5 bits (75), Expect = 0.16
 Identities = 30/87 (34%), Positives = 38/87 (43%), Gaps = 10/87 (11%)

Query: 118 PFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWS--------SNHYPGG 169
           P STPT+  P  + +SG  S  ST   S   A  T  SS HST S        S+  PG 
Sbjct: 327 PGSTPTTHFPASSTTSG-HSEKSTIFHSSPDASGTTPSSAHSTTSGVSEESSTSHSQPGS 385

Query: 170 CRLRAHP-LRESSGLPFSLLAAHLAEG 195
               A P    +SGL      +H ++G
Sbjct: 386 THTTAFPDSTTTSGLSQEPTTSHSSQG 412



 Score = 30.4 bits (67), Expect = 1.4
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 20/69 (28%)

Query: 116 SRPFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHST------------WSS 163
           S P S  T+ SP  T SSGV   ++TS S        +  STH+T            W +
Sbjct: 496 SSPRSPDTTLSPASTTSSGVSEESTTSHS--------RPGSTHTTAFPGSTTMPGQHWIA 547

Query: 164 NHYPGGCRL 172
            H    CRL
Sbjct: 548 THNTVPCRL 556



 Score = 28.5 bits (62), Expect = 5.2
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 8/45 (17%)

Query: 116 SRPFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHST 160
           S P S  T+ SP  T SSGV   ++TS S        +  STH+T
Sbjct: 130 SSPRSPATTLSPASTTSSGVSEESTTSHS--------RPGSTHTT 166


>gi|239757132 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 583

 Score = 33.5 bits (75), Expect = 0.16
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 8/89 (8%)

Query: 82  AVP--EAWGAGLHAQQLPISGLAVP-GRSAPAVA--LACSRPFSTPTSCSPCPTRSSGVR 136
           AVP  E WG GL  Q+   S +A+P G++ PA A  ++ SR     +S S   T+SSG  
Sbjct: 216 AVPLREEWGQGLGEQR---SRMALPAGQTPPATAPSVSVSRSLDCSSSVSRWDTKSSGRM 272

Query: 137 SSTSTSLSSRVRAVKTKSSSTHSTWSSNH 165
                 ++  +  + ++   +   WS  H
Sbjct: 273 RKEFVGITLLLHDLASQKFPSGGPWSDGH 301


>gi|239752490 PREDICTED: similar to Mucin-12 [Homo sapiens]
          Length = 456

 Score = 33.5 bits (75), Expect = 0.16
 Identities = 30/87 (34%), Positives = 38/87 (43%), Gaps = 10/87 (11%)

Query: 118 PFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWS--------SNHYPGG 169
           P STPT+  P  + +SG  S  ST   S   A  T  SS HST S        S+  PG 
Sbjct: 221 PGSTPTTHFPASSTTSG-HSEKSTIFHSSPDASGTTPSSAHSTTSGVSEESSTSHSQPGS 279

Query: 170 CRLRAHP-LRESSGLPFSLLAAHLAEG 195
               A P    +SGL      +H ++G
Sbjct: 280 THTTAFPDSTTTSGLSQEPTTSHSSQG 306



 Score = 28.5 bits (62), Expect = 5.2
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 8/45 (17%)

Query: 116 SRPFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHST 160
           S P S  T+ SP  T SSGV   ++TS S        +  STH+T
Sbjct: 24  SSPRSPATTLSPASTTSSGVSEESTTSHS--------RPGSTHTT 60



 Score = 28.5 bits (62), Expect = 5.2
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 8/45 (17%)

Query: 116 SRPFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHST 160
           S P S  T+ SP  T SSGV   ++TS S        +  STH+T
Sbjct: 390 SSPRSPDTTLSPASTTSSGVSEESTTSHS--------RPGSTHTT 426


>gi|5453579 bone morphogenetic protein 1 isoform 3 precursor [Homo
           sapiens]
          Length = 986

 Score = 33.1 bits (74), Expect = 0.21
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)

Query: 134 GVRSSTSTSLSSRVRA-VKTKSSSTHSTWSSNHYPGG 169
           G ++S +T    +VRA VKTK   +H+ +  N+YPGG
Sbjct: 851 GFQASHATECGGQVRADVKTKDLYSHAQFGDNNYPGG 887


>gi|153792575 hypothetical protein LOC90120 [Homo sapiens]
          Length = 135

 Score = 33.1 bits (74), Expect = 0.21
 Identities = 33/101 (32%), Positives = 44/101 (43%), Gaps = 14/101 (13%)

Query: 78  PLPEAVPEAWGAGLHAQQLPISGLAVPGRSAPAVALACSRPFSTPTSCSPCPTRSSGVRS 137
           P P   P A  AG   +  P  G   P  S      AC RP      C+P PT  +    
Sbjct: 11  PPPPLRPSAAAAGAQCRSCPFRGGCAP--STARTPPACMRPAGP---CAP-PTWPA---P 61

Query: 138 STSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLR 178
           ST+TS  +  RA  T SS+++ST ++      C LR   +R
Sbjct: 62  STTTSTCTSRRAGCTASSASYSTLAA-----ACSLRRSGVR 97


>gi|121114296 caudal type homeobox 1 [Homo sapiens]
          Length = 265

 Score = 32.7 bits (73), Expect = 0.27
 Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 74  VEAAPLPEAVPEAWGAGLHAQQLPISGLAVPGRSAPAVALACSRPFSTPTSCSPCP 129
           VE AP P   P AWGA   A +   +    PG +APA + A S  F  P   SP P
Sbjct: 51  VEPAPAP---PTAWGAPFPAPKDDWAAAYGPGPAAPAASPA-SLAFGPPPDFSPVP 102


>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
            sapiens]
          Length = 2881

 Score = 32.3 bits (72), Expect = 0.36
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 114  ACSRPFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSN 164
            +CS   S+ +S S C    SG  SS+S+S SS   A  + SSST S+ SS+
Sbjct: 2142 SCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSS---ASSSSSSSTSSSSSSS 2189


>gi|32528301 EPH receptor B4 precursor [Homo sapiens]
          Length = 987

 Score = 32.0 bits (71), Expect = 0.47
 Identities = 39/142 (27%), Positives = 53/142 (37%), Gaps = 33/142 (23%)

Query: 69  ADELVVEAAPLPEAVPEAWGA--GLHAQQLPISGLA-VPGRSAP-------AVALACSRP 118
           A   VV+A P P   P  +    G  A+Q P++G +  PG  A        A A    +P
Sbjct: 220 AGSCVVDAVPAPGPSPSLYCREDGQWAEQ-PVTGCSCAPGFEAAEGNTKCRACAQGTFKP 278

Query: 119 FSTPTSCSPCPTRS--------------------SGVRSSTSTSLSSRVRAV--KTKSSS 156
            S   SC PCP  S                    +  R +  T+  S  R+V  +   SS
Sbjct: 279 LSGEGSCQPCPANSHSNTIGSAVCQCRVGYFRARTDPRGAPCTTPPSAPRSVVSRLNGSS 338

Query: 157 THSTWSSNHYPGGCRLRAHPLR 178
            H  WS+    GG     + LR
Sbjct: 339 LHLEWSAPLESGGREDLTYALR 360


>gi|239749931 PREDICTED: FLJ43861 protein [Homo sapiens]
          Length = 642

 Score = 32.0 bits (71), Expect = 0.47
 Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 99  SGLAVPG-RSAPAVALACSRPFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSST 157
           S LA+P  RS  ++AL   R   + T+   C +  S V  S  +  S  + ++++  SST
Sbjct: 181 SSLALPSHRSHSSLALPSLRSHFSSTALHSCGSHFSPVSPSHRSHSSLALPSLRSHFSST 240

Query: 158 HSTWSSNHY-----PGGCRLRAHPLRESSGLPFSLLAAHLAEGHEIVFHVGATNALWLVA 212
                 +H+        C +R  P R    LP S  A  +   H  +         W ++
Sbjct: 241 ALPSCGSHFSPVGSAAACEMRPDPRRPHLPLPNSPCAGQVDAAHTYLSPTHPARERWTLS 300


>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
           sapiens]
          Length = 674

 Score = 31.6 bits (70), Expect = 0.61
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 5/78 (6%)

Query: 102 AVPGRSAPAVALACSRPFSTPTSCSPCPTRSSGVR--SSTSTSLSSRVRAVKTKSSSTHS 159
           A    +A A  +   +P + P    P P R++  R  SS+S+S SS  R   ++SSS  S
Sbjct: 340 AAAAAAAAASGVTTGKPPAPPQPGGPAPGRNASARRRSSSSSSSSSASRTSSSRSSSRSS 399

Query: 160 TWS---SNHYPGGCRLRA 174
           + S     +Y  G   R+
Sbjct: 400 SRSRRGGGYYRSGRHARS 417


>gi|38176300 nestin [Homo sapiens]
          Length = 1621

 Score = 31.2 bits (69), Expect = 0.79
 Identities = 36/126 (28%), Positives = 52/126 (41%), Gaps = 5/126 (3%)

Query: 78  PLPEAVPEAWGAGLHAQQLPISGLAVPG--RSAPAVALACSRPFSTPTSCSPCPTRSSGV 135
           P P+A   A  A + AQ  P+S L   G  + AP    A +R  + P S  P P    G 
Sbjct: 392 PTPQAPSPAVDAEIRAQDAPLSLLQTQGGRKQAPEPLRAEAR-VAIPASVLPGPEEPGGQ 450

Query: 136 RSSTSTSLSSRVRA-VKTKSSSTHSTW-SSNHYPGGCRLRAHPLRESSGLPFSLLAAHLA 193
           R   ST  S    A +    S  HS+  + +   GG R+ +    E  G  + L+    A
Sbjct: 451 RQEASTGQSPEDHASLAPPLSPDHSSLEAKDGESGGSRVFSICRGEGEGQIWGLVEKETA 510

Query: 194 EGHEIV 199
              ++V
Sbjct: 511 IEGKVV 516


>gi|239757105 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 152

 Score = 31.2 bits (69), Expect = 0.79
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 89  AGLHAQQLPISGLAVPGRSAP-AVALACSRPFSTPTSCSPCPTRSSGVRSSTSTSLSS-R 146
           + L  Q L +SGL  P R AP A  +   RP  T  +  P    +   +S    +L + R
Sbjct: 61  SALEMQSLSLSGLCTPSRPAPCAPEMQSPRPPRTLHTFRPGSVGTGNAKSEPLRALHTFR 120

Query: 147 VRAVKTKSSSTHSTWSSNHYPGGCRLRAH 175
              + T ++ + ++  S H P   RLR H
Sbjct: 121 PCTMSTGNAKSETSPDSAHLP--ARLRRH 147


>gi|239751611 PREDICTED: hypothetical protein XP_002347929 [Homo
           sapiens]
          Length = 152

 Score = 31.2 bits (69), Expect = 0.79
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 89  AGLHAQQLPISGLAVPGRSAP-AVALACSRPFSTPTSCSPCPTRSSGVRSSTSTSLSS-R 146
           + L  Q L +SGL  P R AP A  +   RP  T  +  P    +   +S    +L + R
Sbjct: 61  SALEMQSLSLSGLCTPSRPAPCAPEMQSPRPPRTLHTFRPGSVGTGNAKSEPLRALHTFR 120

Query: 147 VRAVKTKSSSTHSTWSSNHYPGGCRLRAH 175
              + T ++ + ++  S H P   RLR H
Sbjct: 121 PCTMSTGNAKSETSPDSAHLP--ARLRRH 147


>gi|169177031 PREDICTED: similar to hCG30082, partial [Homo sapiens]
          Length = 299

 Score = 31.2 bits (69), Expect = 0.79
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 94  QQLPISGLAVPGRSAPAV--ALACSRPFSTPTSCSPCPTR 131
           Q  P+S  A+P    PAV  AL   RP      C PCP R
Sbjct: 12  QHRPLSMAAIPTYPCPAVSPALLLPRPERVKQCCQPCPRR 51


>gi|24497609 nucleoporin 62kDa [Homo sapiens]
          Length = 522

 Score = 31.2 bits (69), Expect = 0.79
 Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 27/123 (21%)

Query: 76  AAPLPEAVPEAWGAGLHAQQLPISGLAVPGRSAPAVALACSRPFSTPTSCSPCPT----- 130
           AAP P A   + G  L A             +AP  +        TP + +  PT     
Sbjct: 206 AAPTPTATITSTGPSLFASIA----------TAPTSSATTGLSLCTPVTTAGAPTAGTQG 255

Query: 131 ---RSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLRESSGLPFSL 187
              ++ G  S TST+ S+   A  T +SS+ +T        G  L   PL   +G+P + 
Sbjct: 256 FSLKAPGAASGTSTTTSTAATATATTTSSSSTT--------GFALNLKPL-APAGIPSNT 306

Query: 188 LAA 190
            AA
Sbjct: 307 AAA 309


>gi|24497607 nucleoporin 62kDa [Homo sapiens]
          Length = 522

 Score = 31.2 bits (69), Expect = 0.79
 Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 27/123 (21%)

Query: 76  AAPLPEAVPEAWGAGLHAQQLPISGLAVPGRSAPAVALACSRPFSTPTSCSPCPT----- 130
           AAP P A   + G  L A             +AP  +        TP + +  PT     
Sbjct: 206 AAPTPTATITSTGPSLFASIA----------TAPTSSATTGLSLCTPVTTAGAPTAGTQG 255

Query: 131 ---RSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLRESSGLPFSL 187
              ++ G  S TST+ S+   A  T +SS+ +T        G  L   PL   +G+P + 
Sbjct: 256 FSLKAPGAASGTSTTTSTAATATATTTSSSSTT--------GFALNLKPL-APAGIPSNT 306

Query: 188 LAA 190
            AA
Sbjct: 307 AAA 309


>gi|24497605 nucleoporin 62kDa [Homo sapiens]
          Length = 522

 Score = 31.2 bits (69), Expect = 0.79
 Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 27/123 (21%)

Query: 76  AAPLPEAVPEAWGAGLHAQQLPISGLAVPGRSAPAVALACSRPFSTPTSCSPCPT----- 130
           AAP P A   + G  L A             +AP  +        TP + +  PT     
Sbjct: 206 AAPTPTATITSTGPSLFASIA----------TAPTSSATTGLSLCTPVTTAGAPTAGTQG 255

Query: 131 ---RSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLRESSGLPFSL 187
              ++ G  S TST+ S+   A  T +SS+ +T        G  L   PL   +G+P + 
Sbjct: 256 FSLKAPGAASGTSTTTSTAATATATTTSSSSTT--------GFALNLKPL-APAGIPSNT 306

Query: 188 LAA 190
            AA
Sbjct: 307 AAA 309


>gi|24497603 nucleoporin 62kDa [Homo sapiens]
          Length = 522

 Score = 31.2 bits (69), Expect = 0.79
 Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 27/123 (21%)

Query: 76  AAPLPEAVPEAWGAGLHAQQLPISGLAVPGRSAPAVALACSRPFSTPTSCSPCPT----- 130
           AAP P A   + G  L A             +AP  +        TP + +  PT     
Sbjct: 206 AAPTPTATITSTGPSLFASIA----------TAPTSSATTGLSLCTPVTTAGAPTAGTQG 255

Query: 131 ---RSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLRESSGLPFSL 187
              ++ G  S TST+ S+   A  T +SS+ +T        G  L   PL   +G+P + 
Sbjct: 256 FSLKAPGAASGTSTTTSTAATATATTTSSSSTT--------GFALNLKPL-APAGIPSNT 306

Query: 188 LAA 190
            AA
Sbjct: 307 AAA 309


>gi|61676188 HECT, UBA and WWE domain containing 1 [Homo sapiens]
          Length = 4374

 Score = 31.2 bits (69), Expect = 0.79
 Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 3/86 (3%)

Query: 70   DELVVEAAPLPEAVPEAWGAGLHAQQLPISGLAVPGRSAPAVALACSRPFSTPTSCSPCP 129
            D   + +  L EAV +   AG   Q  P +G + PG + PAVA    R   +  S  P P
Sbjct: 2858 DTSSLASCTLEEAVGDTSAAGSSEQ--PRAGSSTPGDAPPAVAEVQGRSDGSGESAQP-P 2914

Query: 130  TRSSGVRSSTSTSLSSRVRAVKTKSS 155
              SS   SS S+S      A+    S
Sbjct: 2915 EDSSPPASSESSSTRDSAVAISGADS 2940


>gi|91208418 transcription elongation regulator 1 isoform 2 [Homo
           sapiens]
          Length = 1077

 Score = 31.2 bits (69), Expect = 0.79
 Identities = 22/85 (25%), Positives = 36/85 (42%)

Query: 100 GLAVPGRSAPAVALACSRPFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHS 159
           G + P  S+PA A++ S   STP+S +   T ++ V  + ST  +         S +T +
Sbjct: 257 GASTPTTSSPAPAVSTSTSSSTPSSTTSTTTTATSVAQTVSTPTTQDQTPSSAVSVATPT 316

Query: 160 TWSSNHYPGGCRLRAHPLRESSGLP 184
              S   P    ++  P      LP
Sbjct: 317 VSVSTPAPTATPVQTVPQPHPQTLP 341


>gi|21327715 transcription elongation regulator 1 isoform 1 [Homo
           sapiens]
          Length = 1098

 Score = 31.2 bits (69), Expect = 0.79
 Identities = 22/85 (25%), Positives = 36/85 (42%)

Query: 100 GLAVPGRSAPAVALACSRPFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHS 159
           G + P  S+PA A++ S   STP+S +   T ++ V  + ST  +         S +T +
Sbjct: 257 GASTPTTSSPAPAVSTSTSSSTPSSTTSTTTTATSVAQTVSTPTTQDQTPSSAVSVATPT 316

Query: 160 TWSSNHYPGGCRLRAHPLRESSGLP 184
              S   P    ++  P      LP
Sbjct: 317 VSVSTPAPTATPVQTVPQPHPQTLP 341


>gi|153946393 macrophage stimulating 1 receptor precursor [Homo
           sapiens]
          Length = 1400

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 13  PRRRSRSQPEGNQAHPRRILGMSHAAEAGVETDLAHLVSPRQE 55
           P+RR R  PEG Q +P  +L ++H+A  G +      ++  QE
Sbjct: 304 PKRRRRGAPEGGQPYP--VLRVAHSAPVGAQLATELSIAEGQE 344


>gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens]
          Length = 2852

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 39/166 (23%), Positives = 67/166 (40%), Gaps = 14/166 (8%)

Query: 1    MSKAASVWMHDP-PRRRSRSQPEGNQAHPRRILGMSHAAEAGVETDLAH--LVSPRQEEV 57
            M+KA +V  H   P R +  QP    +   R +    A      +  +H  +++P   +V
Sbjct: 1555 MTKAVTVRGHGSLPVRTTPPQPSLTASPSSRPVASPGAISRSPTSSGSHKAVLTPAVTKV 1614

Query: 58   NHAVGDHAAWEADELVVEAAPLPEAVPEAWGAGLHAQQLPISGLAVPGR----SAPAVAL 113
                G     +A      + PL  A       G  A+Q+P+S LA        S      
Sbjct: 1615 ISRTGVPQPTQAQSASSPSTPLTVA-------GTAAEQVPVSPLATRSLEIVLSTEKGEA 1667

Query: 114  ACSRPFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHS 159
              S+P  +P S  P P  S+  R +  T++++R  A+  ++ +  S
Sbjct: 1668 GHSQPMGSPASPQPHPLPSAPPRPAQHTTMATRSPALPPETPAAAS 1713


>gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens]
          Length = 2924

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 39/166 (23%), Positives = 67/166 (40%), Gaps = 14/166 (8%)

Query: 1    MSKAASVWMHDP-PRRRSRSQPEGNQAHPRRILGMSHAAEAGVETDLAH--LVSPRQEEV 57
            M+KA +V  H   P R +  QP    +   R +    A      +  +H  +++P   +V
Sbjct: 1627 MTKAVTVRGHGSLPVRTTPPQPSLTASPSSRPVASPGAISRSPTSSGSHKAVLTPAVTKV 1686

Query: 58   NHAVGDHAAWEADELVVEAAPLPEAVPEAWGAGLHAQQLPISGLAVPGR----SAPAVAL 113
                G     +A      + PL  A       G  A+Q+P+S LA        S      
Sbjct: 1687 ISRTGVPQPTQAQSASSPSTPLTVA-------GTAAEQVPVSPLATRSLEIVLSTEKGEA 1739

Query: 114  ACSRPFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHS 159
              S+P  +P S  P P  S+  R +  T++++R  A+  ++ +  S
Sbjct: 1740 GHSQPMGSPASPQPHPLPSAPPRPAQHTTMATRSPALPPETPAAAS 1785


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.126    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,609,969
Number of Sequences: 37866
Number of extensions: 504560
Number of successful extensions: 2080
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 93
Number of HSP's that attempted gapping in prelim test: 1938
Number of HSP's gapped (non-prelim): 227
length of query: 233
length of database: 18,247,518
effective HSP length: 99
effective length of query: 134
effective length of database: 14,498,784
effective search space: 1942837056
effective search space used: 1942837056
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.