Search of human proteins with 239750138

Search of human proteins with 239750138

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239750138 PREDICTED: hypothetical protein XP_002347268 [Homo
sapiens]
         (104 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755613 PREDICTED: similar to hCG2017052 [Homo sapiens]          214   2e-56
gi|239750138 PREDICTED: hypothetical protein XP_002347268 [Homo ...   214   2e-56
gi|239744446 PREDICTED: hypothetical protein XP_002343125 [Homo ...   214   2e-56
gi|31543153 immunoglobin superfamily, member 21 [Homo sapiens]         45   9e-06
gi|37595553 ring finger protein 111 [Homo sapiens]                     30   0.41 
gi|38570121 ring finger protein 184 isoform 1 [Homo sapiens]           26   7.7  

>gi|239755613 PREDICTED: similar to hCG2017052 [Homo sapiens]
          Length = 104

 Score =  214 bits (544), Expect = 2e-56
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   MDLISFLDYNCTLDSEGSFGSAHLADLPSNSKVDKTCSEVLSTPTLNVHSGQKYALCPKG 60
           MDLISFLDYNCTLDSEGSFGSAHLADLPSNSKVDKTCSEVLSTPTLNVHSGQKYALCPKG
Sbjct: 1   MDLISFLDYNCTLDSEGSFGSAHLADLPSNSKVDKTCSEVLSTPTLNVHSGQKYALCPKG 60

Query: 61  TKVMMTYARAWVKDTVRILGFQNKVFLEPPVLHEAYVQLVVKEM 104
           TKVMMTYARAWVKDTVRILGFQNKVFLEPPVLHEAYVQLVVKEM
Sbjct: 61  TKVMMTYARAWVKDTVRILGFQNKVFLEPPVLHEAYVQLVVKEM 104


>gi|239750138 PREDICTED: hypothetical protein XP_002347268 [Homo
           sapiens]
          Length = 104

 Score =  214 bits (544), Expect = 2e-56
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   MDLISFLDYNCTLDSEGSFGSAHLADLPSNSKVDKTCSEVLSTPTLNVHSGQKYALCPKG 60
           MDLISFLDYNCTLDSEGSFGSAHLADLPSNSKVDKTCSEVLSTPTLNVHSGQKYALCPKG
Sbjct: 1   MDLISFLDYNCTLDSEGSFGSAHLADLPSNSKVDKTCSEVLSTPTLNVHSGQKYALCPKG 60

Query: 61  TKVMMTYARAWVKDTVRILGFQNKVFLEPPVLHEAYVQLVVKEM 104
           TKVMMTYARAWVKDTVRILGFQNKVFLEPPVLHEAYVQLVVKEM
Sbjct: 61  TKVMMTYARAWVKDTVRILGFQNKVFLEPPVLHEAYVQLVVKEM 104


>gi|239744446 PREDICTED: hypothetical protein XP_002343125 [Homo
           sapiens]
          Length = 104

 Score =  214 bits (544), Expect = 2e-56
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   MDLISFLDYNCTLDSEGSFGSAHLADLPSNSKVDKTCSEVLSTPTLNVHSGQKYALCPKG 60
           MDLISFLDYNCTLDSEGSFGSAHLADLPSNSKVDKTCSEVLSTPTLNVHSGQKYALCPKG
Sbjct: 1   MDLISFLDYNCTLDSEGSFGSAHLADLPSNSKVDKTCSEVLSTPTLNVHSGQKYALCPKG 60

Query: 61  TKVMMTYARAWVKDTVRILGFQNKVFLEPPVLHEAYVQLVVKEM 104
           TKVMMTYARAWVKDTVRILGFQNKVFLEPPVLHEAYVQLVVKEM
Sbjct: 61  TKVMMTYARAWVKDTVRILGFQNKVFLEPPVLHEAYVQLVVKEM 104


>gi|31543153 immunoglobin superfamily, member 21 [Homo sapiens]
          Length = 467

 Score = 45.4 bits (106), Expect = 9e-06
 Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 5/89 (5%)

Query: 6   FLDYNCTLDSEGSFGSAHLADLPSNSKVDKTC--SEVLSTPTLNVHSGQKYAL-CPKGTK 62
           FL ++ T  S+G+     L     N ++D     S  +  P L++    +  L  PKG K
Sbjct: 286 FLRHSRTPSSDGTVEVRALLTWTLNPQIDNEALFSCEVKHPALSMPMQAEVTLVAPKGPK 345

Query: 63  VMMTYARAWVKDTVRIL--GFQNKVFLEP 89
           ++MT +RA V DTVRIL  GFQN VF EP
Sbjct: 346 IVMTPSRARVGDTVRILVHGFQNGVFPEP 374


>gi|37595553 ring finger protein 111 [Homo sapiens]
          Length = 986

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 13/42 (30%), Positives = 23/42 (54%)

Query: 10  NCTLDSEGSFGSAHLADLPSNSKVDKTCSEVLSTPTLNVHSG 51
           NC  +++G  G       PS+   D + S+ LS+P+ ++H G
Sbjct: 107 NCVKENQGILGLRQHLGTPSDEDNDSSFSDCLSSPSSSLHFG 148


>gi|38570121 ring finger protein 184 isoform 1 [Homo sapiens]
          Length = 577

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 37 CSEVLSTPTLNVHSGQKYALCP--KGTKVMMTYARAWVKD 74
          C  +L  P    +S  ++ +C   KG K+MM  + +W KD
Sbjct: 47 CGHLLQDPIAPTNSTCQHYVCKTCKGKKMMMKPSCSWCKD 86


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.133    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,102,503
Number of Sequences: 37866
Number of extensions: 152816
Number of successful extensions: 345
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 340
Number of HSP's gapped (non-prelim): 6
length of query: 104
length of database: 18,247,518
effective HSP length: 75
effective length of query: 29
effective length of database: 15,407,568
effective search space: 446819472
effective search space used: 446819472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.