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Search of human proteins with 239750121
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750121 PREDICTED: hypothetical protein XP_002347280 [Homo
sapiens]
(402 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750121 PREDICTED: hypothetical protein XP_002347280 [Homo ... 827 0.0
gi|239755634 PREDICTED: hypothetical protein [Homo sapiens] 803 0.0
gi|239744429 PREDICTED: hypothetical protein XP_002343157 [Homo ... 803 0.0
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens] 53 4e-07
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens] 53 4e-07
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 52 1e-06
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 51 2e-06
gi|110832843 TBP-associated factor 4 [Homo sapiens] 50 4e-06
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 50 4e-06
gi|239755981 PREDICTED: hypothetical protein XP_002344766 [Homo ... 48 1e-05
gi|239750506 PREDICTED: hypothetical protein XP_002347417 [Homo ... 48 1e-05
gi|239744803 PREDICTED: hypothetical protein XP_002343287 [Homo ... 48 1e-05
gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo ... 48 2e-05
gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo ... 48 2e-05
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ... 47 2e-05
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ... 47 2e-05
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 47 4e-05
gi|122692281 hypothetical protein LOC645369 [Homo sapiens] 47 4e-05
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 46 7e-05
gi|194097436 CDC-like kinase 3 isoform a [Homo sapiens] 46 7e-05
gi|239750672 PREDICTED: hypothetical protein [Homo sapiens] 45 9e-05
gi|239745342 PREDICTED: hypothetical protein XP_002343430 [Homo ... 45 9e-05
gi|239744982 PREDICTED: hypothetical protein [Homo sapiens] 45 9e-05
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 45 1e-04
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 44 3e-04
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 44 3e-04
gi|239741896 PREDICTED: hypothetical protein XP_002342335 [Homo ... 44 3e-04
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 43 4e-04
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 42 8e-04
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 42 8e-04
>gi|239750121 PREDICTED: hypothetical protein XP_002347280 [Homo
sapiens]
Length = 402
Score = 827 bits (2137), Expect = 0.0
Identities = 402/402 (100%), Positives = 402/402 (100%)
Query: 1 MEEEEQEARAPACGWEKICQECKPSAGRCARSCCCCGRRSLPSVSGPVRGRAERRPARGK 60
MEEEEQEARAPACGWEKICQECKPSAGRCARSCCCCGRRSLPSVSGPVRGRAERRPARGK
Sbjct: 1 MEEEEQEARAPACGWEKICQECKPSAGRCARSCCCCGRRSLPSVSGPVRGRAERRPARGK 60
Query: 61 HVRGGGVGGCRDSRAGGSHAAPSGLGVPGDSESALGLLEPGPPKSLRISVTLGQAPRAGP 120
HVRGGGVGGCRDSRAGGSHAAPSGLGVPGDSESALGLLEPGPPKSLRISVTLGQAPRAGP
Sbjct: 61 HVRGGGVGGCRDSRAGGSHAAPSGLGVPGDSESALGLLEPGPPKSLRISVTLGQAPRAGP 120
Query: 121 SAASSAAAGKTPPSRVPAEPSSRRGASKRRESWRTDGERLRSGRGCAGAARGPDASLDTR 180
SAASSAAAGKTPPSRVPAEPSSRRGASKRRESWRTDGERLRSGRGCAGAARGPDASLDTR
Sbjct: 121 SAASSAAAGKTPPSRVPAEPSSRRGASKRRESWRTDGERLRSGRGCAGAARGPDASLDTR 180
Query: 181 REGWPRAAVVGRHEARRLKPGVSVSSSLSPGPPLQRSSSLNETLRGRRPPGPAPAAAGAT 240
REGWPRAAVVGRHEARRLKPGVSVSSSLSPGPPLQRSSSLNETLRGRRPPGPAPAAAGAT
Sbjct: 181 REGWPRAAVVGRHEARRLKPGVSVSSSLSPGPPLQRSSSLNETLRGRRPPGPAPAAAGAT 240
Query: 241 RGTAAPPGRDPSAWFLDSASACPTPLAARSWHPFVANKLCGRGKGAGGGASRPKEGVGSG 300
RGTAAPPGRDPSAWFLDSASACPTPLAARSWHPFVANKLCGRGKGAGGGASRPKEGVGSG
Sbjct: 241 RGTAAPPGRDPSAWFLDSASACPTPLAARSWHPFVANKLCGRGKGAGGGASRPKEGVGSG 300
Query: 301 RARAWEPRGGRESGRSRRRKSLLEDLQTEATLWPSREVPREPSRPSCPQGVAETHTTAER 360
RARAWEPRGGRESGRSRRRKSLLEDLQTEATLWPSREVPREPSRPSCPQGVAETHTTAER
Sbjct: 301 RARAWEPRGGRESGRSRRRKSLLEDLQTEATLWPSREVPREPSRPSCPQGVAETHTTAER 360
Query: 361 AQLRRLAARAPRPPRATSLRAETPPAQGLQHGNLGLTNSRTH 402
AQLRRLAARAPRPPRATSLRAETPPAQGLQHGNLGLTNSRTH
Sbjct: 361 AQLRRLAARAPRPPRATSLRAETPPAQGLQHGNLGLTNSRTH 402
>gi|239755634 PREDICTED: hypothetical protein [Homo sapiens]
Length = 449
Score = 803 bits (2073), Expect = 0.0
Identities = 401/449 (89%), Positives = 401/449 (89%), Gaps = 47/449 (10%)
Query: 1 MEEEEQEARAPACGWEKICQECKPSAGRCARSCCCCGRRSLPSVSGPVRGRAERRPARGK 60
MEEEEQEARAPACGWEKICQECKPSAGRCARSCCCCGRRSLPSVSGPVRGRAERRPARGK
Sbjct: 1 MEEEEQEARAPACGWEKICQECKPSAGRCARSCCCCGRRSLPSVSGPVRGRAERRPARGK 60
Query: 61 HVRGGGVGGCRDSRAGGSHAAPSGLGVPGDSESALGLLEPGPPKSLRISVTLGQAPRAGP 120
HVRGGGVGGCRDSRAGGSHAAPSGLGVPGDSESALGLLEPGPPKSLRISVTLGQAPRAGP
Sbjct: 61 HVRGGGVGGCRDSRAGGSHAAPSGLGVPGDSESALGLLEPGPPKSLRISVTLGQAPRAGP 120
Query: 121 SAASSAAAGKTPPSRVPAEPSSRRGASKRRESWRTDGERLRSGRGCAGAARGPDASLDTR 180
SAASSAAAGKTPPSRVPAEPSSRRGASKRRESWRTDGERLRSGRGCAGAARGPDASLDTR
Sbjct: 121 SAASSAAAGKTPPSRVPAEPSSRRGASKRRESWRTDGERLRSGRGCAGAARGPDASLDTR 180
Query: 181 REGWPRAAVVGRHEARRLKPGVSVSSSLSPGPPLQRSSSLNETLRG-------------- 226
REGWPRAAVVGRHEARRLKPGVSVSSSLSPGPPLQRSSSLNETLR
Sbjct: 181 REGWPRAAVVGRHEARRLKPGVSVSSSLSPGPPLQRSSSLNETLRSAAAHAESSARECGK 240
Query: 227 ---------------------------------RRPPGPAPAAAGATRGTAAPPGRDPSA 253
RRPPGPAPAAAGATRGTAAPPGRDPSA
Sbjct: 241 RTQRPEQRFLCRGSSFCGHRPQRLHPGRPLPPQRRPPGPAPAAAGATRGTAAPPGRDPSA 300
Query: 254 WFLDSASACPTPLAARSWHPFVANKLCGRGKGAGGGASRPKEGVGSGRARAWEPRGGRES 313
WFLDSASACPTPLAARSWHPFVANKLCGRGKGAGGGASRPKEGVGSGRARAWEPRGGRES
Sbjct: 301 WFLDSASACPTPLAARSWHPFVANKLCGRGKGAGGGASRPKEGVGSGRARAWEPRGGRES 360
Query: 314 GRSRRRKSLLEDLQTEATLWPSREVPREPSRPSCPQGVAETHTTAERAQLRRLAARAPRP 373
GRSRRRKSLLEDLQTEATLWPSREVPREPSRPSCPQGVAETHTTAERAQLRRLAARAPRP
Sbjct: 361 GRSRRRKSLLEDLQTEATLWPSREVPREPSRPSCPQGVAETHTTAERAQLRRLAARAPRP 420
Query: 374 PRATSLRAETPPAQGLQHGNLGLTNSRTH 402
PRATSLRAETPPAQGLQHGNLGLTNSRTH
Sbjct: 421 PRATSLRAETPPAQGLQHGNLGLTNSRTH 449
>gi|239744429 PREDICTED: hypothetical protein XP_002343157 [Homo
sapiens]
Length = 449
Score = 803 bits (2073), Expect = 0.0
Identities = 401/449 (89%), Positives = 401/449 (89%), Gaps = 47/449 (10%)
Query: 1 MEEEEQEARAPACGWEKICQECKPSAGRCARSCCCCGRRSLPSVSGPVRGRAERRPARGK 60
MEEEEQEARAPACGWEKICQECKPSAGRCARSCCCCGRRSLPSVSGPVRGRAERRPARGK
Sbjct: 1 MEEEEQEARAPACGWEKICQECKPSAGRCARSCCCCGRRSLPSVSGPVRGRAERRPARGK 60
Query: 61 HVRGGGVGGCRDSRAGGSHAAPSGLGVPGDSESALGLLEPGPPKSLRISVTLGQAPRAGP 120
HVRGGGVGGCRDSRAGGSHAAPSGLGVPGDSESALGLLEPGPPKSLRISVTLGQAPRAGP
Sbjct: 61 HVRGGGVGGCRDSRAGGSHAAPSGLGVPGDSESALGLLEPGPPKSLRISVTLGQAPRAGP 120
Query: 121 SAASSAAAGKTPPSRVPAEPSSRRGASKRRESWRTDGERLRSGRGCAGAARGPDASLDTR 180
SAASSAAAGKTPPSRVPAEPSSRRGASKRRESWRTDGERLRSGRGCAGAARGPDASLDTR
Sbjct: 121 SAASSAAAGKTPPSRVPAEPSSRRGASKRRESWRTDGERLRSGRGCAGAARGPDASLDTR 180
Query: 181 REGWPRAAVVGRHEARRLKPGVSVSSSLSPGPPLQRSSSLNETLRG-------------- 226
REGWPRAAVVGRHEARRLKPGVSVSSSLSPGPPLQRSSSLNETLR
Sbjct: 181 REGWPRAAVVGRHEARRLKPGVSVSSSLSPGPPLQRSSSLNETLRSAAAHAESSARECGK 240
Query: 227 ---------------------------------RRPPGPAPAAAGATRGTAAPPGRDPSA 253
RRPPGPAPAAAGATRGTAAPPGRDPSA
Sbjct: 241 RTQRPEQRFLCRGSSFCGHRPQRLHPGRPLPPQRRPPGPAPAAAGATRGTAAPPGRDPSA 300
Query: 254 WFLDSASACPTPLAARSWHPFVANKLCGRGKGAGGGASRPKEGVGSGRARAWEPRGGRES 313
WFLDSASACPTPLAARSWHPFVANKLCGRGKGAGGGASRPKEGVGSGRARAWEPRGGRES
Sbjct: 301 WFLDSASACPTPLAARSWHPFVANKLCGRGKGAGGGASRPKEGVGSGRARAWEPRGGRES 360
Query: 314 GRSRRRKSLLEDLQTEATLWPSREVPREPSRPSCPQGVAETHTTAERAQLRRLAARAPRP 373
GRSRRRKSLLEDLQTEATLWPSREVPREPSRPSCPQGVAETHTTAERAQLRRLAARAPRP
Sbjct: 361 GRSRRRKSLLEDLQTEATLWPSREVPREPSRPSCPQGVAETHTTAERAQLRRLAARAPRP 420
Query: 374 PRATSLRAETPPAQGLQHGNLGLTNSRTH 402
PRATSLRAETPPAQGLQHGNLGLTNSRTH
Sbjct: 421 PRATSLRAETPPAQGLQHGNLGLTNSRTH 449
>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 53.1 bits (126), Expect = 4e-07
Identities = 95/365 (26%), Positives = 117/365 (32%), Gaps = 66/365 (18%)
Query: 35 CCGRRSLPS----VSGPVRGRAERRPARGKHVRGGGVGGCRDSRAGGSHAAPSGLGVPGD 90
C G PS GP A RRP GGG GSH+ P G PG
Sbjct: 120 CAGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGG--------GRGSHSGPRA-GTPGG 170
Query: 91 SESALGLLEPGPPKSL-RISVTLGQAPRAGPSAASSAAAGKTPPSRVPAEPSSRRGASKR 149
S+ P SL + + G + R +S +G PP R A + GA+
Sbjct: 171 GRSSRAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPR--ALWNRHGGAAGA 228
Query: 150 RESWRTDGERLRSGRGCAGAARGPDASLDTRREGWPRAAVVGRHEARRLKPGVSVSSSLS 209
R R +R C G+ P + L G G +R + S S S
Sbjct: 229 RAQVRGSEKR-----ACPGSTLPPSSVL----AGCVGTRARGHGGVQRQRFSAPSSHSTS 279
Query: 210 PGPPLQRSSSLNETLRGRRPPGPAPAAAGATRGTAAPPGRDPSAWFLDSASACPTPLAAR 269
G P SS E L A A A A+PP + W L PT L
Sbjct: 280 GGRPTGERSS-REPLLDPSKAARASALPTARVAHASPPSLAAAQWRLGGGKRKPTVL--- 335
Query: 270 SWHPFVANKLCGRGKGAGGGASRPKEGVGSGRARAWEPRGGRESGRSRRRKSLLEDLQTE 329
KGA E RA EP G E R +T
Sbjct: 336 --------------KGAVRTDLSTAEEEDPRSGRALEPAQGSELWARAERHGGSSGARTL 381
Query: 330 ATLWPSREVPREPS-RPSCP--------------------QGVAETHTTAERAQLRRLAA 368
T PSR P +P+ R S P +G TH+ A R +
Sbjct: 382 PT--PSRARPGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGS 439
Query: 369 RAPRP 373
RAPRP
Sbjct: 440 RAPRP 444
Score = 32.3 bits (72), Expect = 0.78
Identities = 58/225 (25%), Positives = 76/225 (33%), Gaps = 17/225 (7%)
Query: 48 VRGRAERRPARGKHVRGGGV-GGCRDSRAGGSHAAPSGLGVPGDSESALGLLEPGPPKSL 106
VRG +E+R G + V GC +RA G S S G G S
Sbjct: 232 VRG-SEKRACPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTSGGRPTGERSSR 290
Query: 107 RISVTLGQAPRAGPSAASSAAAGKTPPSRVPAEPSSRRGASKRRESW-----RTDGERLR 161
+ +A RA + ++ A +PPS A+ R G KR+ + RTD
Sbjct: 291 EPLLDPSKAARAS-ALPTARVAHASPPSLAAAQ--WRLGGGKRKPTVLKGAVRTDLSTAE 347
Query: 162 SGRGCAGAARGPDASLDTRREGWPRAAVVGRHEARRLKPGVSVSSSLSPGPPLQRSSSLN 221
+G A P E W RA G R P S PG P R S+
Sbjct: 348 EEDPRSGRALEPAQG----SELWARAERHGGSSGARTLP---TPSRARPGKPAPRGSAPP 400
Query: 222 ETLRGRRPPGPAPAAAGATRGTAAPPGRDPSAWFLDSASACPTPL 266
LRG G+ RG+ A S P P+
Sbjct: 401 ARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPV 445
>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 53.1 bits (126), Expect = 4e-07
Identities = 95/365 (26%), Positives = 117/365 (32%), Gaps = 66/365 (18%)
Query: 35 CCGRRSLPS----VSGPVRGRAERRPARGKHVRGGGVGGCRDSRAGGSHAAPSGLGVPGD 90
C G PS GP A RRP GGG GSH+ P G PG
Sbjct: 120 CAGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGG--------GRGSHSGPRA-GTPGG 170
Query: 91 SESALGLLEPGPPKSL-RISVTLGQAPRAGPSAASSAAAGKTPPSRVPAEPSSRRGASKR 149
S+ P SL + + G + R +S +G PP R A + GA+
Sbjct: 171 GRSSRAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPR--ALWNRHGGAAGA 228
Query: 150 RESWRTDGERLRSGRGCAGAARGPDASLDTRREGWPRAAVVGRHEARRLKPGVSVSSSLS 209
R R +R C G+ P + L G G +R + S S S
Sbjct: 229 RAQVRGSEKR-----ACPGSTLPPSSVL----AGCVGTRARGHGGVQRQRFSAPSSHSTS 279
Query: 210 PGPPLQRSSSLNETLRGRRPPGPAPAAAGATRGTAAPPGRDPSAWFLDSASACPTPLAAR 269
G P SS E L A A A A+PP + W L PT L
Sbjct: 280 GGRPTGERSS-REPLLDPSKAARASALPTARVAHASPPSLAAAQWRLGGGKRKPTVL--- 335
Query: 270 SWHPFVANKLCGRGKGAGGGASRPKEGVGSGRARAWEPRGGRESGRSRRRKSLLEDLQTE 329
KGA E RA EP G E R +T
Sbjct: 336 --------------KGAVRTDLSTAEEEDPRSGRALEPAQGSELWARAERHGGSSGARTL 381
Query: 330 ATLWPSREVPREPS-RPSCP--------------------QGVAETHTTAERAQLRRLAA 368
T PSR P +P+ R S P +G TH+ A R +
Sbjct: 382 PT--PSRARPGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGS 439
Query: 369 RAPRP 373
RAPRP
Sbjct: 440 RAPRP 444
Score = 32.3 bits (72), Expect = 0.78
Identities = 58/225 (25%), Positives = 76/225 (33%), Gaps = 17/225 (7%)
Query: 48 VRGRAERRPARGKHVRGGGV-GGCRDSRAGGSHAAPSGLGVPGDSESALGLLEPGPPKSL 106
VRG +E+R G + V GC +RA G S S G G S
Sbjct: 232 VRG-SEKRACPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTSGGRPTGERSSR 290
Query: 107 RISVTLGQAPRAGPSAASSAAAGKTPPSRVPAEPSSRRGASKRRESW-----RTDGERLR 161
+ +A RA + ++ A +PPS A+ R G KR+ + RTD
Sbjct: 291 EPLLDPSKAARAS-ALPTARVAHASPPSLAAAQ--WRLGGGKRKPTVLKGAVRTDLSTAE 347
Query: 162 SGRGCAGAARGPDASLDTRREGWPRAAVVGRHEARRLKPGVSVSSSLSPGPPLQRSSSLN 221
+G A P E W RA G R P S PG P R S+
Sbjct: 348 EEDPRSGRALEPAQG----SELWARAERHGGSSGARTLP---TPSRARPGKPAPRGSAPP 400
Query: 222 ETLRGRRPPGPAPAAAGATRGTAAPPGRDPSAWFLDSASACPTPL 266
LRG G+ RG+ A S P P+
Sbjct: 401 ARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPV 445
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 51.6 bits (122), Expect = 1e-06
Identities = 87/323 (26%), Positives = 115/323 (35%), Gaps = 50/323 (15%)
Query: 45 SGPVRGRAERRPARGKHVRGGGVGGCRDSRAGGSHAAPSGLGVPGDSESALGLLEPGPPK 104
+G R R P+ G G G + + G + G G PG + S P P
Sbjct: 289 TGSQRSSGSRSPSPSG---GSGWGSPQRNGGSGQRSGAHG-GRPGSAHSP-----PDKPS 339
Query: 105 SLRISVTLGQAPRAGPSAASSAAAGKTPPSRVPAEPSSRRGASKRRESWRTDGERLRSGR 164
S +PR AA AA TPP+R PS R S + R G R R
Sbjct: 340 S--------PSPRVRDKAA---AAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRR 388
Query: 165 GCAGAARGPDASLDTRREG--WPRAAVVGRHEARRLKPGVSVSSSLS----PGPPLQRSS 218
R ++ RR G PR A R +R L S S S S PGP + S
Sbjct: 389 RRRRRRRSRSSASAPRRRGRRRPRPA-PPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGS 447
Query: 219 SLNETLRGR----RPP-------GPAPAAAGATRG-----TAAPPGRDPSAWFLDSASAC 262
G+ RPP P+P A G G ++ PG P +W S+S
Sbjct: 448 ERGHGGHGKRAKERPPRARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSW---SSSRS 504
Query: 263 PTPLAARSWHPFVANKLCGRGKGAGGGASRPKEGVGSGRARAWEPRGGRESGRSRRRKSL 322
P+ +RS + R SR K+ G GRAR E R RSR +
Sbjct: 505 PSKSRSRSAEKRPHSP--SRSPSPKKPLSRDKD--GEGRARHSEAEATRARRRSRSYSPI 560
Query: 323 LEDLQTEATLWPSREVPREPSRP 345
+ + + R + RP
Sbjct: 561 RKRRRDSPSFMEPRRITSARKRP 583
Score = 38.1 bits (87), Expect = 0.014
Identities = 74/286 (25%), Positives = 106/286 (37%), Gaps = 54/286 (18%)
Query: 143 RRGASKRRESWRTDGERLRSGRGCAGAARGPDASLDTRREGWPRAAVVGRHEARRLKPGV 202
R+ +K ++ T+ RS R +G++ P S P + + +H K G
Sbjct: 233 RKEKNKEKKRPHTESPGRRSHRHSSGSSHSPSLSSHYSDSRSP-SRLSPKHRDEGRKTGS 291
Query: 203 SVSS-SLSPGPPLQRSSSLNETLRGRRPPGPAPAAAGATRGTA-APPGR--DPSAWFLD- 257
SS S SP P + G G A G G+A +PP + PS D
Sbjct: 292 QRSSGSRSPSPSGGSGWGSPQRNGGS---GQRSGAHGGRPGSAHSPPDKPSSPSPRVRDK 348
Query: 258 SASACPTPLAARSWHPFVANKLCGRGKGAGGGASRPKEGVGSGRARAWEPRGGRESGRSR 317
+A+A PTP A RGK + S P GRA GG R R
Sbjct: 349 AAAAAPTPPA--------------RGKESPSPRSAPSSQGRGGRAA-----GGAGRRRRR 389
Query: 318 RRKSLLEDLQTEATLWPSREVPREPSRPSCPQGVAETHTTAERAQLRRLAARAP------ 371
RR+ A P R R P RP+ P+G + + + A + AP
Sbjct: 390 RRRRRRSRSSASA---PRRRGRRRP-RPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEP 445
Query: 372 ---------------RPPRA-TSLRAETPPAQGLQHGNLGLTNSRT 401
RPPRA + + +P A G + G G ++SR+
Sbjct: 446 GSERGHGGHGKRAKERPPRARPASTSPSPGAHGRRGGPEGKSSSRS 491
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 51.2 bits (121), Expect = 2e-06
Identities = 79/309 (25%), Positives = 112/309 (36%), Gaps = 31/309 (10%)
Query: 51 RAERRPARGKHVRGGGVGGCRDSRAG------GSHAAPSGLGVPGDSESALGLLEPGPPK 104
RA+ R V G CR+ + G A P L PGDSE G + P +
Sbjct: 343 RADGAMRRRVFVVGTEAEACREGKVSVEVVTAGGAALPPPLLPPGDSEIEEGEIVQ-PEE 401
Query: 105 SLRISVTL----GQAPRAGPSAASSAAAGKTPPSRVPAEPSSRRGASKRRESWRTDGE-- 158
R++++L G+A R P+A+++ A P P P S ES DGE
Sbjct: 402 EPRLALSLFRPGGRAARPTPAASATPTAQPLPQPPAPRAPEGDDFLSLHAES---DGEGA 458
Query: 159 ---RLRSGRGCAGAARGPDASLDTRREGWPRAAVVGRHEARRLKPGVSVSSSLSPGPPLQ 215
L AA LD RR+ + R+ R P + + + + GPP +
Sbjct: 459 LQVDLGEPAPAPPAADSRWGGLDLRRKILTQRR--ERYRQRSPSPAPAPAPAAAAGPPTR 516
Query: 216 RSSSLNETLRGRRPPGPAPAAAGATRGTAAPPGRDPSAWFLDSASACPTPLAARSWHPFV 275
+ S R R+ G A AA ++ GT P S W DS S
Sbjct: 517 KKSR-----RERKRSGEAKEAASSSSGTQPAPPAPASPW--DSKKHRSRDRKPGSHASSS 569
Query: 276 ANKLCGRGKGAGGGASRPKEGVGSGRARAWEPRGGRESGRSRRRKSLLEDLQTEATLWPS 335
A + R + S + + R R R R RRR+S T ++
Sbjct: 570 ARR---RSRSRSRSRSTRRRSRSTDRRRGGSRRSRSREKRRRRRRSASPPPATSSSSSSR 626
Query: 336 REVPREPSR 344
RE R R
Sbjct: 627 RERHRGKHR 635
Score = 44.7 bits (104), Expect = 2e-04
Identities = 83/346 (23%), Positives = 125/346 (36%), Gaps = 59/346 (17%)
Query: 81 APSGLGVPGDSESALGLLEPGPP---KSLRISVTLGQAPRAGPSAASSAAAGKTPPSRVP 137
+PS P + +A GPP KS R G+A A S++ + A P S P
Sbjct: 498 SPSPAPAPAPAAAA------GPPTRKKSRRERKRSGEAKEAASSSSGTQPAPPAPAS--P 549
Query: 138 AEPSSRRGASKRRESWRTDGERLRS-GRGCAGAARGPDASLDTRREGWPRAAVVGRHEAR 196
+ R ++ S + R RS R + + R S D RR G R+ + R
Sbjct: 550 WDSKKHRSRDRKPGSHASSSARRRSRSRSRSRSTRRRSRSTDRRRGGSRRSRSREKRRRR 609
Query: 197 RLKPGVSVSSSLSPGPPLQRSSSLN-ETLRGR--------------RPPGPAPAAAGATR 241
R S SP P SSS E RG+ R G + G+ +
Sbjct: 610 R--------RSASPPPATSSSSSSRRERHRGKHRDGGGSKKKKKRSRSRGEKRSGDGSEK 661
Query: 242 --GTAAPPGRDPSAWFLDS--ASACPTPLAARSWHPFVA----------NKLCGRGKGAG 287
A PP S DS A P + + H A +K RG
Sbjct: 662 APAPAPPPSGSTSCGDRDSRRRGAVPPSIQDLTDHDLFAIKRTITVGRLDKSDPRGPSPA 721
Query: 288 GGASRPKEGVGSGRARAWEPRGGRESGRSRRRKSLLEDLQTEATLWPSREVPREPSRPSC 347
+S +E + + E RGG+ S + RRR + SRE + SR
Sbjct: 722 PASSPKREVLYDSEGLSGEERGGKSSQKDRRRSGAASSSSS------SRE---KGSRRKA 772
Query: 348 PQGVAETHTTAERAQLRRLAARAPRPPRATSLRAETPPAQGLQHGN 393
G + +R + R +++ RPP+ ++ + PP + G+
Sbjct: 773 LDG-GDRDRDRDRDRDRDRSSKKARPPKESAPSSGPPPKPPVSSGS 817
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 50.1 bits (118), Expect = 4e-06
Identities = 76/298 (25%), Positives = 99/298 (33%), Gaps = 56/298 (18%)
Query: 58 RGKHVRGGGVGGCRDSRAGGSHAAPSGLGVPGDSESALGLL-----------------EP 100
R VR G + GS A +G G +E A G P
Sbjct: 46 RTPEVRAAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRP 105
Query: 101 GPPKSLRISVTLGQAPRAGP---------------SAASSAAAGKTPPSRVPAEPSSRRG 145
GPP R V G AP A AA++ AAG P PA+P+
Sbjct: 106 GPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAA 165
Query: 146 ASKRRESWRTDGERLRSGRGCAGAARGPDASLDTRREGWPRAAVVGRHEARRLKPGVSV- 204
+ R G G G G GP A+ AA++ H A P VS+
Sbjct: 166 LAARAGPGPGPGPGPGPGPG-PGKPAGPGAAQTLNGS----AALLNSHHA--AAPAVSLV 218
Query: 205 ---SSSLSPGPPLQRSSSLNET---LRGRRPPGPA----PAAAGATRGTAAPPGRDPSAW 254
++L P P ++ +T + PP PA PAA AAPP P+
Sbjct: 219 NNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPA 278
Query: 255 FLDSASACPT--PLAARSWHPFVANKLCGRGKGAGGGASRPKEGVGSGRARAWEPRGG 310
L P P AA P V + G+ G A P G + +P G
Sbjct: 279 TLARPPGHPAGPPTAA----PAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPG 332
Score = 39.3 bits (90), Expect = 0.006
Identities = 95/413 (23%), Positives = 124/413 (30%), Gaps = 110/413 (26%)
Query: 51 RAERRPARGKHVRGGGVGGCRDSRAGGSHAAPSGLGVPGDSESAL----------GLLEP 100
RA A G HV G G AG AAP+ G PG + G P
Sbjct: 51 RAAAAGALGNHVVSGSPAGA----AGAGPAAPAE-GAPGAAPEPPPAGRARPGGGGPQRP 105
Query: 101 GPPKSLRISVTLGQAPRAGP---------------SAASSAAAGKTPPSRVPAEPSSRRG 145
GPP R V G AP A AA++ AAG P PA+P+
Sbjct: 106 GPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAA 165
Query: 146 ASKRRESWRTDGER--------LRSGRGCAGAARGPDASLDTRREGWPRAAVVGRHEARR 197
+ R G +G G A G A L++ P ++V A
Sbjct: 166 LAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAAL 225
Query: 198 LK------PGVSVSSS-----------LSPGPPLQRSSSLNETLRGRRPPGPA------- 233
L PG + + +P PP + + PP PA
Sbjct: 226 LPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPG 285
Query: 234 --------------PAAAGATRGTAAPPGRDPSAWFLDSASACPTPLAARSWHPFVANKL 279
PAAA A P P+A S P P AA +
Sbjct: 286 HPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAA--------- 336
Query: 280 CGRGKGAGGGASRPKEGVGSGRARAWEPRGGRESGRSRRRKSLLEDLQTEATLWPSREVP 339
G A PK V + A + SG + S++ + L VP
Sbjct: 337 ---APAPGVKAESPKRVVQAAPPAA---QTLAASGPASTAASMVIGPTMQGALPSPAAVP 390
Query: 340 REPSRPSCPQGVAETHTTAERAQLRR-----------------LAARAPRPPR 375
P P P G+ + A L R LA R P+PP+
Sbjct: 391 --PPAPGTPTGLPKGAAGAVTQSLSRTPTATTSGIRATLTPTVLAPRLPQPPQ 441
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 50.1 bits (118), Expect = 4e-06
Identities = 71/293 (24%), Positives = 102/293 (34%), Gaps = 40/293 (13%)
Query: 134 SRVPAEPSSRRGASKRRESWRTDGERLRSGRGCAGAARGPDASLDTRREGWPRAAVVGRH 193
SR P P R + +R R RS + A RG S R G R+ R
Sbjct: 534 SRSPQRPGWSRSRNTQRRGRSRSARRGRS-HSRSPATRGRSRSRTPARRGRSRSRTPARR 592
Query: 194 EARRLKPGVSVSSSLSPG---------PPLQRSSSLNETLRGRRPPGPAPAAAGATRGTA 244
+R P S S +P P +RS + + R R PA + + T
Sbjct: 593 RSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTP 652
Query: 245 APPGRDPS---AWFLDSASACPTPLAARSWHPFVANKLCGRGKGAGGGASRPKEGVGSGR 301
A GR S A S S P + RS A + R + G SR + V GR
Sbjct: 653 ARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGR 712
Query: 302 ARAWEP--RGGRESGRSRRRKSLLEDLQTEATLWPSREVPREPSRPS------------- 346
+ + P RG S R+ KS ++ + P + R SR S
Sbjct: 713 SHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKSR 772
Query: 347 ------------CPQGVAETHTTAERAQLRRLAARAPRPPRATSLRAETPPAQ 387
CP+ ++T R+ + A++ PPR + + PP Q
Sbjct: 773 LSLRRSLSGSSPCPKQKSQTPPRRSRSGSSQPKAKSRTPPRRSRSSSSPPPKQ 825
Score = 48.9 bits (115), Expect = 8e-06
Identities = 83/339 (24%), Positives = 118/339 (34%), Gaps = 62/339 (18%)
Query: 117 RAGPSAASSAAAGKTPPSRVPAEPSSRRGASKRRE-SWRTDGERLRSGRGCA----GAAR 171
R G S + + A SR P ++RG S+ R WR R GR + G +R
Sbjct: 480 RMGRSRSPATAKRGRSRSRTP----TKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSR 535
Query: 172 GPDA-----SLDTRREGWPRAAVVGRHEAR--------RLKPGVSVSSSLSPGPPLQRSS 218
P S +T+R G R+A GR +R R + S S P +RS
Sbjct: 536 SPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSR 595
Query: 219 SLNETLRGRRPPGPAPAAAGATRGTAAPPGRDPSAWFLDSASACP----------TPLA- 267
S T R R PA +R A R S S S P TP
Sbjct: 596 SRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARR 655
Query: 268 --ARSWHPFVANKLCGRGKGAGGGASRPKEGVGSGRARAWEPRGGRESGRS--------- 316
+RS P + R G SR + GR+R+ PR GR RS
Sbjct: 656 GRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHS 715
Query: 317 --------------RRRKSLLEDLQTEATLWPSREVPREPSRPSCPQGVAETHTTAERAQ 362
R+ KS ++ + P + R SR S + + +
Sbjct: 716 RTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKSRLSL 775
Query: 363 LRRLAARAPRPPRATSLRAETPPAQGLQHGNLGLTNSRT 401
R L+ +P P + +++TPP + + SRT
Sbjct: 776 RRSLSGSSPCPKQ----KSQTPPRRSRSGSSQPKAKSRT 810
Score = 38.9 bits (89), Expect = 0.008
Identities = 65/319 (20%), Positives = 114/319 (35%), Gaps = 44/319 (13%)
Query: 73 SRAGGSHAAPSGLGVPGDSESALGLLEPGPPKSLRISVTLGQAPRAGPSAASSAAAGKTP 132
S++ S A + GD L + PG P S +G+ P + + SA A P
Sbjct: 2472 SQSLSSGAVATTTSSAGDHNGMLSVPAPGVPHS-----DVGEPPASTGAQQPSALAALQP 2526
Query: 133 PSRVPAEPSSRRGASKRRESWRTDGERLRSGRGCAGAARGPDASLDTRREGWPRAAVVGR 192
+ SS +S S + SG +S D+ P
Sbjct: 2527 AKERRSSSSSSSSSSSSSSSSSSSSSSSSSG----------SSSSDSEGSSLP------- 2569
Query: 193 HEARRLKPGVSVSSSLSPGPPLQRSSSLNETLRGRRPPGPAPAAAGATRGTAAPPGRDPS 252
++P V++ SP P + E +R RPP P PA +++ S
Sbjct: 2570 -----VQPEVALKRVPSPTP------APKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSS 2618
Query: 253 AWFLDSASACPTPLAARSWHPFVANKLCGRGKGAGGGASRPKEGVGSGRARAWEPRGGRE 312
+ S+S+ + ++ S ++ + ++P A +P G
Sbjct: 2619 SSSSSSSSSSSSSSSSSS-----SSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGER 2673
Query: 313 SGRSRRRKSLLEDLQTEATLWPSREVPREPSRPSCPQGVAETHTTAERAQLRRLAARAPR 372
RS R+ ++ L+ +L S R PS P+ + + + +R +R+P
Sbjct: 2674 RSRSPRKP--IDSLRDSRSLSYSPVERRRPSPQPSPRDQQSSSSERGSRRGQRGDSRSPS 2731
Query: 373 PPRATSLRAETPPAQGLQH 391
R R ETP + ++H
Sbjct: 2732 HKR----RRETPSPRPMRH 2746
Score = 36.2 bits (82), Expect = 0.054
Identities = 75/316 (23%), Positives = 116/316 (36%), Gaps = 68/316 (21%)
Query: 103 PKSLRI--SVTLGQAPRAGPSAASS-AAAGKTPPS----RVPAEPSSRRGASKRRESWRT 155
PKS R S + A + S + S +AA KT + R P+ S RRG
Sbjct: 255 PKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPASGRRG---------- 304
Query: 156 DGERLRSGRGCAGAARGPDASLDTRREGWPRAAVVGRHEARRLKPGVSVSSSLSPGPPLQ 215
+G+ S G R T++ P + + + ++ K S+ P P +
Sbjct: 305 EGDAPFSEPGTTSTQRPSSPETATKQ---PSSPYEDKDKDKKEK------SATRPSPSPE 355
Query: 216 RSSSLNETLRGRRPPGPAPAAAGATRGTAAP------------------PGRDPSAWFLD 257
RSS+ G PP P P A G+ P P RD S
Sbjct: 356 RSST------GPEPPAPTPLLAERHGGSPQPLATTPLSQEPVNPPSEASPTRDRSP--PK 407
Query: 258 SASACPTPLAARSWHPFVANKLCGRGKGAGGGASRPKEGVGSGRARAWEPRG-GRESGRS 316
S P ++ S P R + + +P GS R + P R GR+
Sbjct: 408 SPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTSKNRSHGRA 467
Query: 317 RRRKSLLEDLQTEATLWPSREVPREPSRPSCPQGVAETHTTAERAQLRRLAARAPRPPRA 376
+R KS + PSR + R S + +G + + T +R R +R+P+ R+
Sbjct: 468 KRDKS--------HSHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSR---SRSPQWRRS 516
Query: 377 TSL----RAETPPAQG 388
S R+ +P +G
Sbjct: 517 RSAQRWGRSRSPQRRG 532
Score = 36.2 bits (82), Expect = 0.054
Identities = 93/405 (22%), Positives = 127/405 (31%), Gaps = 77/405 (19%)
Query: 23 KPSAGRCARSCCCCGRRSLPSVSGPVRGRAERRPARGKHVRGGGVG--GCRDSRAGGSHA 80
KP A A+S G S P P RR G +G G G + + H
Sbjct: 1607 KPRAAPRAQS----GSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTESSPEHP 1662
Query: 81 APSGLGVPGDSESALGLLEPGPPKSLRISVTLGQAPRAGPSAASSAAAGKTP-------- 132
S G S + P R S + + R + S +A +P
Sbjct: 1663 PKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSASSSPETRSRTPP 1722
Query: 133 -----PSRVPAEPSSRRGASKRRESWRTDGERLRSGRGCAGAARGPDASLDTRREGWPRA 187
PS EP+ + +S+RR S + + S RG R P PR
Sbjct: 1723 RHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRG-----RSPSPK--------PRG 1769
Query: 188 AVVGRHEARRLKPGVS-----VSSSLSPGPPLQRSSSLNETLRGRR------PPGPAPAA 236
R +RR K + SS S QRS S + R RR PA
Sbjct: 1770 LQRSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQE 1829
Query: 237 AGAT-------RGTAAPPGR-------DPSAWFLDSASACP-TPLAARSWHPFVANKLC- 280
+ T R P R P+ W + A P T +RS P ++ +
Sbjct: 1830 SSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSR 1889
Query: 281 GRGKGAGGGASRPKEGVGSGRARAWEPRGGRESGRSRRRKSLLEDLQTEATLWPSREVPR 340
R SR + V R+R+ R RSR + V R
Sbjct: 1890 SRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSR-----------------TPPVTR 1932
Query: 341 EPSRPSCPQGVAETHTTAERAQLRRLAARAPRPPRATSLRAETPP 385
SR P + + RR +R P R S R+ T P
Sbjct: 1933 RRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRS-RSRTSP 1976
Score = 35.8 bits (81), Expect = 0.070
Identities = 69/310 (22%), Positives = 102/310 (32%), Gaps = 36/310 (11%)
Query: 109 SVTLGQAPRAGPSAASSAAAGKTPPSRVPAEPSSRRGASKRRESWRTDGERLRSGRGCAG 168
S L PR SS+A+ +P PS RR S R DG S +G
Sbjct: 1404 SPVLDAVPRTPSRERSSSASSPEMKDGLPRTPS-RRSRSGSSPGLR-DGSGTPSRHSLSG 1461
Query: 169 AARGPDASLDTRREGWPRAAVVGRHEARRLKPGVSVSSSLSPG-------PPLQRS---S 218
++ G T G +A P S SP P +RS S
Sbjct: 1462 SSPGMKDIPRTPSRGRSECDSSPEPKALPQTPRPRSRSPSSPELNNKCLTPQRERSGSES 1521
Query: 219 SLNETLRGRRPPGPAPAAAGA----TRGTAAPPGRDPSAWFLDSASACPTPLAARSWHPF 274
S+++ R P G + + + +A+P R S DS + TPL RS
Sbjct: 1522 SVDQKTVARTPLGQRSRSGSSQELDVKPSASPQERSESDSSPDSKAKTRTPLRQRS---- 1577
Query: 275 VANKLCGRGKGAGGGASRPKEGVGSGRARAWEPRGGRESGRSRRRKSLLEDLQTEATLWP 334
+ K + R+R+ ++ R+ R D E
Sbjct: 1578 ---------RSGSSPEVDSKSRLSPRRSRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPA 1628
Query: 335 SREVPREP-------SRPSCPQGVAETHTTAERAQLRRLAARAPRPPRATSLRAETPPAQ 387
R +PR R P+G + T ++ E R A R R ++ TPP +
Sbjct: 1629 PRALPRRSRSGSSSKGRGPSPEGSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRR 1688
Query: 388 GLQHGNLGLT 397
+ LT
Sbjct: 1689 RSSRSSPELT 1698
Score = 35.0 bits (79), Expect = 0.12
Identities = 84/340 (24%), Positives = 119/340 (35%), Gaps = 34/340 (10%)
Query: 47 PVRGRAERR-PARGKHVRGGGVGGCRDSRAGGSHAAPSGLGVPGDSESALGLLEPGPPKS 105
PVR R+ R PAR R G +R G S + G S S G +S
Sbjct: 630 PVRRRSRSRSPAR----RSGRSRSRTPARRGRSRSRTPARR--GRSRSRTPARRSGRSRS 683
Query: 106 ---LRISVTLGQAPRAGPSAASSAAAGKTPPSRVPAEPSSRRGASKRRESWRTDGERLRS 162
R + + PR G S + S SR P +S+R+ RT R RS
Sbjct: 684 RTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRS 743
Query: 163 GRGCAGAARGPDASLDTRREGWPRAAVVGRHEARRLKPGVS-VSSSLSPGPPLQ-RSSSL 220
+ +S +R PR+ R RR G S S PP + RS S
Sbjct: 744 -NSSPEMKKSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKSQTPPRRSRSGSS 802
Query: 221 NETLRGRRPPGPAPAAAGATRGTAAPPGRDPSAWFLDSASACPTPLAARSWHPFVANKLC 280
+ R PP +R +++PP + S + + +P HP V +
Sbjct: 803 QPKAKSRTPP-------RRSRSSSSPPPKQKSKTPSRQSHSSSSP------HPKVKSGTP 849
Query: 281 GRGKGAGGGASRPKEGVGSGRARAWEPRGGRE-SGRSRRRKSLLEDLQTEATLWPSREVP 339
R +G+ ++ V R +E E R+ R S S P
Sbjct: 850 PR-QGSITSPQANEQSVTPQRRSCFESSPDPELKSRTPSRHSCSGSSPPRV---KSSTPP 905
Query: 340 RE-PSRPSCPQGVAETHTTAERAQLRRLAARAPRPPRATS 378
R+ PSR S PQ + Q + +P P R TS
Sbjct: 906 RQSPSRSSSPQ--PKVKAIISPRQRSHSGSSSPSPSRVTS 943
Score = 32.0 bits (71), Expect = 1.0
Identities = 64/287 (22%), Positives = 94/287 (32%), Gaps = 23/287 (8%)
Query: 117 RAGPSAASSAAAGKTPPSRVPAEPSSRRGASKRRESWRTDGERLRSGRGCAGAARGPDAS 176
R S A GK +R P P+ RR ++ S R+ + R +G+ P A
Sbjct: 2052 RRSRSRTPRTARGKRSLTRSP--PAIRRRSASGSSSDRSRSATPPATRNHSGSRTPPVAL 2109
Query: 177 LDTRREGWPRAAVVGRHEARRLKPGV--SVSSSLSPGPPLQRSSSLNETLRGRRPPGP-- 232
+R + R ++ R PG+ + SS +P LQ++ G R P
Sbjct: 2110 NSSRMSCFSRPSMSPTPLDRCRSPGMLEPLGSSRTPMSVLQQAGGSMMDGPGPRIPDHQR 2169
Query: 233 ------------APAAAGATRGTAAPPGRDPSAWFLDSASACPTPLAARSWHPFVANKLC 280
A A + GTA PP +A S P P+ S A L
Sbjct: 2170 TSVPENHAQSRIALALTAISLGTARPPPSMSAAGLAARMSQVPAPVPLMSLRTAPAANLA 2229
Query: 281 GRGKGAGGGASRPKEGVGSGRARAWEPRGGRESGRSRRRKSLLEDLQTEATLWPSREVPR 340
R A A + S R A R+ + + + PS
Sbjct: 2230 SRIPAASAAAM----NLASARTPAIPTAVNLADSRTPAAAAAMNLASPRTAVAPSAVNLA 2285
Query: 341 EPSRPSCPQ-GVAETHTTAERAQLRRLAARAPRPPRATSLRAETPPA 386
+P P+ P +A T A A L + P + TP A
Sbjct: 2286 DPRTPTAPAVNLAGARTPAALAALSLTGSGTPPTAANYPSSSRTPQA 2332
>gi|239755981 PREDICTED: hypothetical protein XP_002344766 [Homo
sapiens]
Length = 307
Score = 48.1 bits (113), Expect = 1e-05
Identities = 73/254 (28%), Positives = 99/254 (38%), Gaps = 41/254 (16%)
Query: 49 RGRAERRPARGK-HVRGGGVGGCRDSRAGGSHAAPSGLGVPGDSESALGLLEPGPPKSLR 107
R +A RP R VRGG G C S GS A+ SG G+P + + + R
Sbjct: 82 RAQARPRPLRPPWEVRGGARGPC--SAPVGSRAS-SGPGLPSAAAA----------RPAR 128
Query: 108 ISVTLGQAPRAGPSAASSAAAGKTPPSRVPAEPSSRRGASKRRESWRTDGERLRSGRGCA 167
++T P+ ASSA G P RVP G R S DG R ++G GC
Sbjct: 129 KTLTCQPRSIESPATASSAGCGSGP--RVPQV--RLLGPGGRPSSPARDGSRRKAGHGCT 184
Query: 168 GAARGPDASLDTRREGWPRAAVVGRHEARRLKPGVSVSSSLSPGPPLQRSSSLNETLRGR 227
++G +++ G P V+ + L P V S LS + + S R
Sbjct: 185 SQSQGDAVAMEAEARGSPGGRVL--MQELTLLP-VEASLILSVVAAVLQLHSY------R 235
Query: 228 RPPGPAP-----------AAAGATRGTAAPPGRDPSAWFLDSASACPTPLAARSWHPFVA 276
RP G P G RG GR+ +A +A+A + AAR A
Sbjct: 236 RPAGDTPDPRRGHHRHRRRQRGGGRGGGGRGGREAAATVHGNAAA-SSSAAARG--AAAA 292
Query: 277 NKLCGRGKGAGGGA 290
+ G GK GA
Sbjct: 293 TTIDGGGKEDAAGA 306
>gi|239750506 PREDICTED: hypothetical protein XP_002347417 [Homo
sapiens]
Length = 325
Score = 48.1 bits (113), Expect = 1e-05
Identities = 73/254 (28%), Positives = 99/254 (38%), Gaps = 41/254 (16%)
Query: 49 RGRAERRPARGK-HVRGGGVGGCRDSRAGGSHAAPSGLGVPGDSESALGLLEPGPPKSLR 107
R +A RP R VRGG G C S GS A+ SG G+P + + + R
Sbjct: 100 RAQARPRPLRPPWEVRGGARGPC--SAPVGSRAS-SGPGLPSAAAA----------RPAR 146
Query: 108 ISVTLGQAPRAGPSAASSAAAGKTPPSRVPAEPSSRRGASKRRESWRTDGERLRSGRGCA 167
++T P+ ASSA G P RVP G R S DG R ++G GC
Sbjct: 147 KTLTCQPRSIESPATASSAGCGSGP--RVPQV--RLLGPGGRPSSPARDGSRRKAGHGCT 202
Query: 168 GAARGPDASLDTRREGWPRAAVVGRHEARRLKPGVSVSSSLSPGPPLQRSSSLNETLRGR 227
++G +++ G P V+ + L P V S LS + + S R
Sbjct: 203 SQSQGDAVAMEAEARGSPGGRVL--MQELTLLP-VEASLILSVVAAVLQLHSY------R 253
Query: 228 RPPGPAP-----------AAAGATRGTAAPPGRDPSAWFLDSASACPTPLAARSWHPFVA 276
RP G P G RG GR+ +A +A+A + AAR A
Sbjct: 254 RPAGDTPDPRRGHHRHRRRQRGGGRGGGGRGGREAAATVHGNAAA-SSSAAARG--AAAA 310
Query: 277 NKLCGRGKGAGGGA 290
+ G GK GA
Sbjct: 311 TTIDGGGKEDAAGA 324
>gi|239744803 PREDICTED: hypothetical protein XP_002343287 [Homo
sapiens]
Length = 325
Score = 48.1 bits (113), Expect = 1e-05
Identities = 73/254 (28%), Positives = 99/254 (38%), Gaps = 41/254 (16%)
Query: 49 RGRAERRPARGK-HVRGGGVGGCRDSRAGGSHAAPSGLGVPGDSESALGLLEPGPPKSLR 107
R +A RP R VRGG G C S GS A+ SG G+P + + + R
Sbjct: 100 RAQARPRPLRPPWEVRGGARGPC--SAPVGSRAS-SGPGLPSAAAA----------RPAR 146
Query: 108 ISVTLGQAPRAGPSAASSAAAGKTPPSRVPAEPSSRRGASKRRESWRTDGERLRSGRGCA 167
++T P+ ASSA G P RVP G R S DG R ++G GC
Sbjct: 147 KTLTCQPRSIESPATASSAGCGSGP--RVPQV--RLLGPGGRPSSPARDGSRRKAGHGCT 202
Query: 168 GAARGPDASLDTRREGWPRAAVVGRHEARRLKPGVSVSSSLSPGPPLQRSSSLNETLRGR 227
++G +++ G P V+ + L P V S LS + + S R
Sbjct: 203 SQSQGDAVAMEAEARGSPGGRVL--MQELTLLP-VEASLILSVVAAVLQLHSY------R 253
Query: 228 RPPGPAP-----------AAAGATRGTAAPPGRDPSAWFLDSASACPTPLAARSWHPFVA 276
RP G P G RG GR+ +A +A+A + AAR A
Sbjct: 254 RPAGDTPDPRRGHHRHRRRQRGGGRGGGGRGGREAAATVHGNAAA-SSSAAARG--AAAA 310
Query: 277 NKLCGRGKGAGGGA 290
+ G GK GA
Sbjct: 311 TTIDGGGKEDAAGA 324
>gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo
sapiens]
Length = 400
Score = 47.8 bits (112), Expect = 2e-05
Identities = 83/307 (27%), Positives = 102/307 (33%), Gaps = 58/307 (18%)
Query: 39 RSLPS-VSGPVRGRAERRPARGKHVRGGGVGGCRDSRAGGSHAAPSGLGVPGDSESALGL 97
R LPS VS R RR + + + G GG GLG P GL
Sbjct: 94 RFLPSSVSAGSAARTLRRGSEARKAQTPRPAGVAQGSGGGGERWLQGLGPP----RGRGL 149
Query: 98 LEPGPPKSLRISVTLGQAPRAGPSAASSAAAGKTPPSRVPAEPSSRRGASKRRESWR-TD 156
PP SLR+ L PR P A PA G + W+ +
Sbjct: 150 STAPPPSSLRL---LPPTPRPFPPA--------------PAGGKGEGGGKESAVLWKGAE 192
Query: 157 GERLRSGRGCAGAARGPDASLDTRREGWPRAAVVGRHEARRLKPGVSVSSSLSP------ 210
G + R A A G D RE + R L P ++ S+ SP
Sbjct: 193 GGGEKGNRNMAAAPLG-----DPAREAAQAQTGLRRRRPLELVPRPALPSAPSPRIRCFL 247
Query: 211 -------GPPLQRSSSLNETL-RG--RRPPGPAPAAAGATRGTAAPPGRDPSAWFLDS-- 258
G L + E RG RR P P P A A R GR A F +
Sbjct: 248 APGRSRVGAALTEEQAAGEAAARGLWRRKPAPCPRGACAARLGGRGTGRARRAEFRVAGP 307
Query: 259 ---ASACPTPLAARSWHPFVANKLCGRGKGAGGGASRPKEGVGSGRARAWE-PRGGRESG 314
A + RSW F A +GGG S G G+A E PR R +
Sbjct: 308 RGVAEEAESGRGWRSWPSFSA--------VSGGGESPDPAGCSRGKAAPEEPPRVARRAH 359
Query: 315 RSRRRKS 321
+R R S
Sbjct: 360 ENRLRTS 366
>gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo
sapiens]
Length = 400
Score = 47.8 bits (112), Expect = 2e-05
Identities = 83/307 (27%), Positives = 102/307 (33%), Gaps = 58/307 (18%)
Query: 39 RSLPS-VSGPVRGRAERRPARGKHVRGGGVGGCRDSRAGGSHAAPSGLGVPGDSESALGL 97
R LPS VS R RR + + + G GG GLG P GL
Sbjct: 94 RFLPSSVSAGSAARTLRRGSEARKAQTPRPAGVAQGSGGGGERWLQGLGPP----RGRGL 149
Query: 98 LEPGPPKSLRISVTLGQAPRAGPSAASSAAAGKTPPSRVPAEPSSRRGASKRRESWR-TD 156
PP SLR+ L PR P A PA G + W+ +
Sbjct: 150 STAPPPSSLRL---LPPTPRPFPPA--------------PAGGKGEGGGKESAVLWKGAE 192
Query: 157 GERLRSGRGCAGAARGPDASLDTRREGWPRAAVVGRHEARRLKPGVSVSSSLSP------ 210
G + R A A G D RE + R L P ++ S+ SP
Sbjct: 193 GGGEKGNRNMAAAPLG-----DPAREAAQAQTGLRRRRPLELVPRPALPSAPSPRIRCFL 247
Query: 211 -------GPPLQRSSSLNETL-RG--RRPPGPAPAAAGATRGTAAPPGRDPSAWFLDS-- 258
G L + E RG RR P P P A A R GR A F +
Sbjct: 248 APGRSRVGAALTEEQAAGEAAARGLWRRKPAPCPRGACAARLGGRGTGRARRAEFRVAGP 307
Query: 259 ---ASACPTPLAARSWHPFVANKLCGRGKGAGGGASRPKEGVGSGRARAWE-PRGGRESG 314
A + RSW F A +GGG S G G+A E PR R +
Sbjct: 308 RGVAEEAESGRGWRSWPSFSA--------VSGGGESPDPAGCSRGKAAPEEPPRVARRAH 359
Query: 315 RSRRRKS 321
+R R S
Sbjct: 360 ENRLRTS 366
>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
Length = 647
Score = 47.4 bits (111), Expect = 2e-05
Identities = 82/292 (28%), Positives = 100/292 (34%), Gaps = 73/292 (25%)
Query: 56 PARGKHVRGGGVGGCRDSRAGGSHAAPSGLGVPGDSESALGLLEPGPPKSLRISVTLGQA 115
P RG G G C G AAP + G + A L P+ L +
Sbjct: 229 PRRGAGRAGAGAAACGRR---GRIAAP----LSGVVQKASYLRPKNLPRLLSM------- 274
Query: 116 PRAGPSAASSAAAGKTPPSRVPAEPSSRRGASKRRESWRTDGERLRSGRGCA-GAARGPD 174
PSAA+ P S P R GA+ R S GE G G A G A P
Sbjct: 275 ----PSAAARPCGAALPRSGFSGRPRGRGGAAAGRGS---RGEHPACGVGLARGTAPQPA 327
Query: 175 ASLDTRREGWPRAAVVGRHEA----------RRLKPGVSVSSS-----LSPGPPLQRS-- 217
++ R EA RR + G +S SP P QR
Sbjct: 328 STWALAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSPPPRRQRPRR 387
Query: 218 ---SSLNETLRGRRPPGPAPAAAGATRGTAAPPGRDPSAWFLDSASACPTPLAARSWHPF 274
+SL E + RRPP P+ AG R P+AW PTP AR
Sbjct: 388 LPRASLQEEPK-RRPPCARPSGAGPAR-------EGPAAW----PGGAPTPPHARP---- 431
Query: 275 VANKLCGRGKGAGGGASRPKEG-------VGSGRARAWEPRGGRESGRSRRR 319
GR + G P+ G GS R W+P GG R+RRR
Sbjct: 432 -----TGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGG---SRARRR 475
>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
sapiens]
Length = 647
Score = 47.4 bits (111), Expect = 2e-05
Identities = 82/292 (28%), Positives = 100/292 (34%), Gaps = 73/292 (25%)
Query: 56 PARGKHVRGGGVGGCRDSRAGGSHAAPSGLGVPGDSESALGLLEPGPPKSLRISVTLGQA 115
P RG G G C G AAP + G + A L P+ L +
Sbjct: 229 PRRGAGRAGAGAAACGRR---GRIAAP----LSGVVQKASYLRPKNLPRLLSM------- 274
Query: 116 PRAGPSAASSAAAGKTPPSRVPAEPSSRRGASKRRESWRTDGERLRSGRGCA-GAARGPD 174
PSAA+ P S P R GA+ R S GE G G A G A P
Sbjct: 275 ----PSAAARPCGAALPRSGFSGRPRGRGGAAAGRGS---RGEHPACGVGLARGTAPQPA 327
Query: 175 ASLDTRREGWPRAAVVGRHEA----------RRLKPGVSVSSS-----LSPGPPLQRS-- 217
++ R EA RR + G +S SP P QR
Sbjct: 328 STWALAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSPPPRRQRPRR 387
Query: 218 ---SSLNETLRGRRPPGPAPAAAGATRGTAAPPGRDPSAWFLDSASACPTPLAARSWHPF 274
+SL E + RRPP P+ AG R P+AW PTP AR
Sbjct: 388 LPRASLQEEPK-RRPPCARPSGAGPAR-------EGPAAW----PGGAPTPPHARP---- 431
Query: 275 VANKLCGRGKGAGGGASRPKEG-------VGSGRARAWEPRGGRESGRSRRR 319
GR + G P+ G GS R W+P GG R+RRR
Sbjct: 432 -----TGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGG---SRARRR 475
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 46.6 bits (109), Expect = 4e-05
Identities = 87/286 (30%), Positives = 106/286 (37%), Gaps = 68/286 (23%)
Query: 37 GRRSLPS---VSGPVRGRAERRPARGKHVRGGGVGGCRDSRAGGSHAAPSGLGVPGDSES 93
G R P V GP G A R A G G G A GS AP G+PG+
Sbjct: 677 GERGFPGERGVQGPP-GPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGE-RG 734
Query: 94 ALGLLEP-------------GPPKSLRISVTLGQAPRAGPSAASSAAAGKTPPSRVPAEP 140
A GL P G P + G GP A + G++ PS PA P
Sbjct: 735 AAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGP-AGAPGDKGESGPSG-PAGP 792
Query: 141 SSRRGASKRRESWRTDGERLRSG-RGCAGAARGPDASLDTRREGWPRAAVVGRHEARRLK 199
+ RGA G+R G G AG A P A +G P A + +
Sbjct: 793 TGARGA---------PGDRGEPGPPGPAGFAGPPGA------DGQPGA---------KGE 828
Query: 200 PGVSVSSSLSPGPPLQRSSSLNETLRGRRPPGP-----APAAAGATRGTAAPPGRDPSAW 254
PG + GPP + PPGP AP A GA RG+A PPG +
Sbjct: 829 PG-DAGAKGDAGPPGPAGPA--------GPPGPIGNVGAPGAKGA-RGSAGPPG---ATG 875
Query: 255 FLDSASAC----PTPLAARSWHPFVANKLCGRG-KGAGGGASRPKE 295
F +A P+ A P A K G+G +G G A RP E
Sbjct: 876 FPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGE 921
Score = 29.6 bits (65), Expect = 5.0
Identities = 30/95 (31%), Positives = 34/95 (35%), Gaps = 21/95 (22%)
Query: 45 SGPVRGRAERRPARGKHVRGG-GVGGCRDSRAGGSHAAPSGLGVPGDSESALGLLEPGPP 103
+GPV R PA + RG G G + R H SGL P PGPP
Sbjct: 1075 AGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGP-----------PGPP 1123
Query: 104 KSLRISVTLGQAPRAGPSAASSAAAGKTPPSRVPA 138
G GPS AS A + PP A
Sbjct: 1124 ---------GSPGEQGPSGASGPAGPRGPPGSAGA 1149
>gi|122692281 hypothetical protein LOC645369 [Homo sapiens]
Length = 621
Score = 46.6 bits (109), Expect = 4e-05
Identities = 75/290 (25%), Positives = 105/290 (36%), Gaps = 36/290 (12%)
Query: 118 AGPSAASSAAAGKTPPSRVPAEPSSRRGASKRRESWRTDGERLRSGRGCAGAARGPDASL 177
A +AA++AAA + S A P + ++ G L+ G GC G+ A+
Sbjct: 219 AAAAAAAAAAAASSSSSAPAAAPPGAIPLNGFLSYVQSRGLELKPG-GCGGSGDAFGAAA 277
Query: 178 DTRREGWPR--AAVVGRHEARRLKPGVSVSSSLSPGPPLQRSSSLNETLR------GRRP 229
+ WP AA G P SS P P + ++ R G R
Sbjct: 278 MLAKGSWPPHPAAPSGGRPRGAASPPDLASSPRCPREPPSLAEAVYSVYRERSGVAGSRR 337
Query: 230 PGPAPAAAGATRGTAAPPGRDPSAWFLDSASACPTPLAARSWHPFVANKLCGRGKGAGGG 289
A AAA A+ ++ P P +W S + + S F L G G+ GG
Sbjct: 338 AAAATAAAAASSCSSPAPCSPPESWGRQSTA---SSFVDSSLSAFALLPLQG-GRDRGGD 393
Query: 290 ASRPKEGVGSGRARAWEPRGGRESGRSRRRKSLLEDLQTEATLWPSREVPREP-----SR 344
A EG R RG +E R S+ E ++ +R P EP +R
Sbjct: 394 A----EGASCSWQRPPGERGSQEIPRGELDLSMTNLRGAEGSMRGARREPEEPEGAVAAR 449
Query: 345 PSCPQGVAETHTTAERAQLRRLAA------RAPRPPRATSLRAETPPAQG 388
+ QG T A LRR + RAP P E PP+ G
Sbjct: 450 AARGQG-GRLPRTGRYAALRRRSTSGLPDYRAPPSP-------EPPPSPG 491
Score = 35.4 bits (80), Expect = 0.092
Identities = 65/256 (25%), Positives = 86/256 (33%), Gaps = 49/256 (19%)
Query: 25 SAGRCARSCCCCGRRSLPSVSGPVRGRAERRPARGKHVRGGGVGGCRDS------RAGGS 78
+A A S + P + P+ G +RG ++ GG GG D+ A GS
Sbjct: 224 AAAAAAASSSSSAPAAAPPGAIPLNGFLSYVQSRGLELKPGGCGGSGDAFGAAAMLAKGS 283
Query: 79 ----HAAPSGLGVPGDSESALGLLE----PGPPKSLRISVTLGQAPRAG------PSAAS 124
AAPSG G P + S L P P SL +V R+G +AA+
Sbjct: 284 WPPHPAAPSG-GRPRGAASPPDLASSPRCPREPPSLAEAVYSVYRERSGVAGSRRAAAAT 342
Query: 125 SAAAGKTPPSRVPAEPSSRRGASKRRESWRTDGER------LRSGRGCAGAARGPDASLD 178
+AAA + S P P G S+ L+ GR G A G S
Sbjct: 343 AAAAASSCSSPAPCSPPESWGRQSTASSFVDSSLSAFALLPLQGGRDRGGDAEGASCS-- 400
Query: 179 TRREGWPRAAVVGRHEARRLKPGVSVSSSLSPGP---PLQRSSSLNETLRGRRPPGPAPA 235
W R PG S + G + ++RG R P
Sbjct: 401 -----WQR------------PPGERGSQEIPRGELDLSMTNLRGAEGSMRGARREPEEPE 443
Query: 236 AAGATRGTAAPPGRDP 251
A A R GR P
Sbjct: 444 GAVAARAARGQGGRLP 459
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 45.8 bits (107), Expect = 7e-05
Identities = 80/298 (26%), Positives = 101/298 (33%), Gaps = 49/298 (16%)
Query: 123 ASSAAAGKTPPSRVPAEPSSRRGASKRRESWRTDGE-RLRSGRGCAG----AARGPDASL 177
A + AA +TP +R P + R S R T R+ G G A R
Sbjct: 8 AKAGAAARTPAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGG 67
Query: 178 DTRREGWPRAA--------VVGRHE----ARRLKPGV-----SVSSSLSPGPPLQ---RS 217
T E PRA GR E A+ PG S + PGP Q R
Sbjct: 68 ATIPESAPRAGPTRTSRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKGLRI 127
Query: 218 SSLNETLRGRRPPGPAPAA--AGATRGTAAPPGRDPSAWFLDSASACPT----PLAARSW 271
S+ RG+ P +A AGA R T+ P PS + A T P A S
Sbjct: 128 SAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSA 187
Query: 272 HPFVANKLCGRGKGAGGGASRPKEGVGSGRARAWEPRGGRESGRSRRRKSLLEDLQTEAT 331
P + G K + R GG + SR S L + A
Sbjct: 188 RPRPPTE--GPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPAR 245
Query: 332 LWPS-REVPREPSRPSCPQGVAETHTTAERAQLRRLAARAPRPPRATSLRAETPPAQG 388
PS R PR P+ PS P + +A RPP+ T R + PA G
Sbjct: 246 SGPSARGTPRAPAHPSQP---------------KPKGLQALRPPQVTPPRKDAAPALG 288
Score = 35.8 bits (81), Expect = 0.070
Identities = 69/255 (27%), Positives = 90/255 (35%), Gaps = 30/255 (11%)
Query: 31 RSCCCCGRRSLPSVSGPVRGRAERRPARGKHVRGGGVGGCRDSRAGGSHAAPSGLGVPGD 90
RS G R SGP G AR G VG R + + G
Sbjct: 144 RSALSAGARR--DTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVS 201
Query: 91 SESALGLLEPGPPKSLRISVTLGQAPRAGPSAASSAAAGKTP----PS-----RVPAEPS 141
S S EP P R S G A S +SSA +P PS R PA PS
Sbjct: 202 SASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPS 261
Query: 142 SRRGASKRRESWRTDGERLRSGRGCAGAARGPDAS--LDTRREGWPRAAVVGRHEARRLK 199
+ K ++ R ++ R A A GP +S L T P +
Sbjct: 262 QPK--PKGLQALRP--PQVTPPRKDAAPALGPLSSSPLATPSPSAP--------PSPSAP 309
Query: 200 PGVSVSSSLSPGPPLQRSSSL-NETLRGRRPPGPAPAAAGATRGTAAPPGRDPSAWFLDS 258
P + S PP Q ++SL + TL+ P+P + A PP + P A L
Sbjct: 310 PSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLS----PLATPPPQAPPALALPP 365
Query: 259 ASACPTPLAARSWHP 273
A P+P A+ P
Sbjct: 366 LQAPPSPPASPPLSP 380
Score = 30.0 bits (66), Expect = 3.9
Identities = 41/156 (26%), Positives = 58/156 (37%), Gaps = 32/156 (20%)
Query: 201 GVSVSSSLSPGPPLQRSSSLNETLRGRRPPGPAPAA-----------AGATRGTAAPPGR 249
G ++ +L+PGPP S S + TL G G + +A +G G AA P
Sbjct: 561 GPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPPP 620
Query: 250 D-------PSAWFLDSASACP---TPLAARSWHPFV----ANKLCGRGKGAGGGASRPKE 295
D P+AW A P A W P A+ LC + G ++ P
Sbjct: 621 DAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPGSADGLCTIYETEGPESATPAP 680
Query: 296 GV-------GSGRARAWEPRGGRESGRSRRRKSLLE 324
G G+ +A G S RS ++ L E
Sbjct: 681 GALDPGPSPGTSGGKAAAGAGAGASSRSPKQARLGE 716
>gi|194097436 CDC-like kinase 3 isoform a [Homo sapiens]
Length = 638
Score = 45.8 bits (107), Expect = 7e-05
Identities = 67/204 (32%), Positives = 74/204 (36%), Gaps = 43/204 (21%)
Query: 37 GRRSLPSV---SGPVRGRAERRPARGKHVRGGGVGGCRDSRAGGSHAAPSGLGVPGDSES 93
GRRS PS SGP +PAR H+ G G RD+ AGG LG PG S
Sbjct: 18 GRRSGPSPTARSGPHLSALRAQPARAAHLSGRGTYVRRDT-AGGGPGQARPLGPPGTSLL 76
Query: 94 ALGLLEPGPPKSLRISVTLGQAPRAGPSAASSAAAGKTPPSRVP---AEPSSRRGAS-KR 149
G G G P A S A +A PPSRV A +SR GA R
Sbjct: 77 GRGARRSGE----------GWCPGAFESGARAA----RPPSRVEPRLATAASREGAGLPR 122
Query: 150 RESWRTDGERLRSGR---GCAGA-----------ARGPDASLDTRREGWPRAAVVGRHEA 195
E G RSG AGA + PD L R W R R
Sbjct: 123 AEVAAGSGRGARSGEWGLAAAGAWETMHHCKRYRSPEPDPYLSYR---WKRRRSYSREHE 179
Query: 196 RRLKPGVSVSSSLSPGPPLQRSSS 219
RL+ S P P RS S
Sbjct: 180 GRLR----YPSRREPPPRRSRSRS 199
>gi|239750672 PREDICTED: hypothetical protein [Homo sapiens]
Length = 627
Score = 45.4 bits (106), Expect = 9e-05
Identities = 87/326 (26%), Positives = 108/326 (33%), Gaps = 66/326 (20%)
Query: 70 CRDSRAGGSHAAPSGL-------GVPGDSESALGLLEPGPPKSLRISVTLGQAPRAGPSA 122
CRDS G A + PGDS + P G A SA
Sbjct: 7 CRDSNKGRGSAMVDPVPEEEKAGAEPGDSGGDEAVASVPPDSQ-------GAQEPAASSA 59
Query: 123 ASSAAAGKTPPSRVP--AEPSSRRGASK-------RRESWRTDGERL-----RSGRGCAG 168
++SA+A + VP A RR S + +G R RS CA
Sbjct: 60 SASASAAVPRKAEVPCAAAEGGRREQSPLLHLDLFNFDCPEAEGSRYVLTSPRSLEACAR 119
Query: 169 AARGP-----DASLDTRREGWPRAAVV--GRHEARRLKPGVSVSSSLSPGPPLQRSSSLN 221
A P A D RE R+ V G +EA + + + + R
Sbjct: 120 CAVKPVELLPRALADLVREAPGRSMRVATGLYEAYEAERRAKLQQCRAERERIMRE---- 175
Query: 222 ETLRGRRPPGPAPAAAGATRGTAAPPGRDPSAWFLDSASACPTPLAARS---------WH 272
E R P PA AAA A +AP S+ S A P P AAR
Sbjct: 176 EKRRLFTPLSPAAAAAAAAAAASAPSAGSSSSCSSASLPASPAPRAARKASPSPSSARTQ 235
Query: 273 PFVANKLCGRGKGAGGGASRPKEGVGSGRARAWEPRGGRESGRSRRRKSLLEDLQTEATL 332
P A GR + SR +EG S + A ES R R
Sbjct: 236 PPPAGSRTGRKSHSLDSLSRRREGALSSESGASSSSYSGESLRELR-------------- 281
Query: 333 WPSREVPREPSRPSCPQGVAETHTTA 358
WP PR +R SCP G A + T A
Sbjct: 282 WP----PRASARNSCPAGSASSTTNA 303
>gi|239745342 PREDICTED: hypothetical protein XP_002343430 [Homo
sapiens]
Length = 230
Score = 45.4 bits (106), Expect = 9e-05
Identities = 62/228 (27%), Positives = 79/228 (34%), Gaps = 50/228 (21%)
Query: 123 ASSAAAGKTPPSRVPAEPSSRRGASKRRESWRTDGERLRSGRGCAGAARGPDASLDTRRE 182
AS+ + P R+ + R GA +R R+GRG + G + SL R
Sbjct: 17 ASTFHKNQEPQPRLTLHCNRRWGARRRPR---------RAGRGRRWGSLGTNGSLTGRGP 67
Query: 183 GWPRAAVVGRHEARRLKPGVSVSSSLSPGPPLQRSSSLNETLRGRRPPGPAPAAAGATRG 242
G P + S P PP + GR P P AG TRG
Sbjct: 68 GSP-----------------PLPPSAGPAPPPGLREAWVGGGGGRVSPAPG---AGLTRG 107
Query: 243 TAAPPGRDPSA--WFLDSASACPTPLAARSWHPFVANKLCGRGKGAGGGASRPKEGVGSG 300
AP GR A W +A A P+ A S SR ++G G G
Sbjct: 108 PLAPLGRRRHAPRWEPAAAGALLGPMVALSQRD----------------CSRDRDGAGRG 151
Query: 301 RARAWEPRGGRESGRSRRRKSLLEDLQTEA--TLWPS-REVPREPSRP 345
++EPR GRE +T W S RE PR RP
Sbjct: 152 APASFEPRRGREKASEMLAFFAWARWRTPVIPKCWDSRREPPRRDPRP 199
>gi|239744982 PREDICTED: hypothetical protein [Homo sapiens]
Length = 627
Score = 45.4 bits (106), Expect = 9e-05
Identities = 87/326 (26%), Positives = 108/326 (33%), Gaps = 66/326 (20%)
Query: 70 CRDSRAGGSHAAPSGL-------GVPGDSESALGLLEPGPPKSLRISVTLGQAPRAGPSA 122
CRDS G A + PGDS + P G A SA
Sbjct: 7 CRDSNKGRGSAMVDPVPEEEKAGAEPGDSGGDEAVASVPPDSQ-------GAQEPAASSA 59
Query: 123 ASSAAAGKTPPSRVP--AEPSSRRGASK-------RRESWRTDGERL-----RSGRGCAG 168
++SA+A + VP A RR S + +G R RS CA
Sbjct: 60 SASASAAVPRKAEVPCAAAEGGRREQSPLLHLDLFNFDCPEAEGSRYVLTSPRSLEACAR 119
Query: 169 AARGP-----DASLDTRREGWPRAAVV--GRHEARRLKPGVSVSSSLSPGPPLQRSSSLN 221
A P A D RE R+ V G +EA + + + + R
Sbjct: 120 CAVKPVELLPRALADLVREAPGRSMRVATGLYEAYEAERRAKLQQCRAERERIMRE---- 175
Query: 222 ETLRGRRPPGPAPAAAGATRGTAAPPGRDPSAWFLDSASACPTPLAARS---------WH 272
E R P PA AAA A +AP S+ S A P P AAR
Sbjct: 176 EKRRLFTPLSPAAAAAAAAAAASAPSAGSSSSCSSASLPASPAPRAARKASPSPSSARTQ 235
Query: 273 PFVANKLCGRGKGAGGGASRPKEGVGSGRARAWEPRGGRESGRSRRRKSLLEDLQTEATL 332
P A GR + SR +EG S + A ES R R
Sbjct: 236 PPPAGSRTGRKSHSLDSLSRRREGALSSESGASSSSYSGESLRELR-------------- 281
Query: 333 WPSREVPREPSRPSCPQGVAETHTTA 358
WP PR +R SCP G A + T A
Sbjct: 282 WP----PRASARNSCPAGSASSTTNA 303
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 45.1 bits (105), Expect = 1e-04
Identities = 67/270 (24%), Positives = 97/270 (35%), Gaps = 55/270 (20%)
Query: 72 DSRAGGSHAAPSGLGVPGDSESALGLLE----PGPPKSLRISVTLGQAPRAGPSAASSAA 127
+S A AAP P DS + L++ PG + R + A R P +
Sbjct: 329 ESEAAPEPAAPPAAPSPPDSPAEGRLVKAQYIPGAQAATR-GLPGRAARRKPPPLTRGRS 387
Query: 128 AGKTPPSRVP---------AEPSSRRGASKRRESWRTDGERLRSGRGCAGAA-------- 170
++PP P AE S RRG+ + R++ R+ E GR A +
Sbjct: 388 VEQSPPRERPRAAGRRGRMAEASGRRGSPRARKASRSQSETSLLGRASAVPSGPPKYPTA 447
Query: 171 -----------RGPDASLDTRREG----WPRAAVVGRHEARRLKPGVSVSSSLSPGP--- 212
RGP +L + G W A + + RR++P + PGP
Sbjct: 448 EREEPRPPRPRRGPAPTLAAQAAGSCRRWRSTAEIDAADGRRVRPRAPAARVPGPGPSPS 507
Query: 213 -PLQR-----SSSLNETLRGRRPP----GPAPAAAG--ATRGTAAPPGRDPSAWFLDSAS 260
P +R + S +E GR P GPA G ++A G P+ SAS
Sbjct: 508 APQRRLLYGCAGSDSECSAGRLGPLGRRGPAGGVGGGYGESESSASEGESPA---FSSAS 564
Query: 261 ACPTPLAARSWHPFVANKLCGRGKGAGGGA 290
+ W + G GAG GA
Sbjct: 565 SDSDGSGGLVWPQQLVAATAASGGGAGAGA 594
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 43.9 bits (102), Expect = 3e-04
Identities = 82/307 (26%), Positives = 103/307 (33%), Gaps = 58/307 (18%)
Query: 123 ASSAAAGKTPPSRVPAEPSSRRGASKR------RESWRTDGERLRSGR--------GCAG 168
A + AA +TP +R P + R S R + R G GR G G
Sbjct: 8 AKAGAAARTPAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGG 67
Query: 169 AA-------RGPDASLDT-RREGWPRAAVVGRHE----ARRLKPGV-----SVSSSLSPG 211
A GP S T R R GR E A+ PG S + PG
Sbjct: 68 ATIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPG 127
Query: 212 PPLQ---RSSSLNETLRGRRPPGPAPAA--AGATRGTAAPPGRDPSAWFLDSASACPT-- 264
P Q R S+ RG+ P +A AGA R T+ P PS + A T
Sbjct: 128 PLGQKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEV 187
Query: 265 --PLAARSWHPFVANKLCGRGKGAGGGASRPKEGVGSGRARAWEPRGGRESGRSRRRKSL 322
P A S P + G K + R GG + SR S
Sbjct: 188 GLPRPAPSARPRPPTE--GPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSS 245
Query: 323 LEDLQTEATLWPS-REVPREPSRPSCPQGVAETHTTAERAQLRRLAARAPRPPRATSLRA 381
L + A PS R PR P+ PS P + +A RPP+ T R
Sbjct: 246 ATPLSSPARSGPSARGTPRAPAHPSQP---------------KPKGLQALRPPQVTPPRK 290
Query: 382 ETPPAQG 388
+ PA G
Sbjct: 291 DAAPALG 297
Score = 36.6 bits (83), Expect = 0.041
Identities = 58/245 (23%), Positives = 80/245 (32%), Gaps = 17/245 (6%)
Query: 31 RSCCCCGRRSLPSVSGPVRGRAERRPARGKHVRGGGVGGCRDSRAGGSHAAPSGLGVPGD 90
RS G R SGP G AR G VG R + + G
Sbjct: 153 RSALSAGARR--DTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVS 210
Query: 91 SESALGLLEPGPPKSLRISVTLGQAPRAGPSAASSAAAGKTPPSRVPAEPSSRRGASKRR 150
S S EP P R S G A S +SSA +P P+ + R +
Sbjct: 211 SASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPS 270
Query: 151 ESWRTDGERLRSGRGCAGAARGPDASLDTRREGWPRAAVVGRHEARRLKPGVSVSSSLSP 210
+ + LR P R++ P + P ++ S P
Sbjct: 271 QPKPKGLQALR-----------PPQVTPPRKDAAPALGPLSSSPLATPSPSAALQSQAPP 319
Query: 211 G-PPLQRSSSLNETLRGRRP-PGPAPAAAGATRGTAAPPGRDPSAWFLDSASACPTPLAA 268
P SSSL L P P+P+A + + +PP PS ++ PT A
Sbjct: 320 TLPATPHSSSLTCQLATPLPLAPPSPSAPPSLQTLPSPPATPPSQ--ATTSLGSPTLQAT 377
Query: 269 RSWHP 273
S+ P
Sbjct: 378 HSFLP 382
Score = 30.0 bits (66), Expect = 3.9
Identities = 41/156 (26%), Positives = 58/156 (37%), Gaps = 32/156 (20%)
Query: 201 GVSVSSSLSPGPPLQRSSSLNETLRGRRPPGPAPAA-----------AGATRGTAAPPGR 249
G ++ +L+PGPP S S + TL G G + +A +G G AA P
Sbjct: 600 GPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPPP 659
Query: 250 D-------PSAWFLDSASACP---TPLAARSWHPFV----ANKLCGRGKGAGGGASRPKE 295
D P+AW A P A W P A+ LC + G ++ P
Sbjct: 660 DAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPGSADGLCTIYETEGPESATPAP 719
Query: 296 GV-------GSGRARAWEPRGGRESGRSRRRKSLLE 324
G G+ +A G S RS ++ L E
Sbjct: 720 GALDPGPSPGTSGGKAAAGAGAGASSRSPKQARLGE 755
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 43.9 bits (102), Expect = 3e-04
Identities = 82/307 (26%), Positives = 103/307 (33%), Gaps = 58/307 (18%)
Query: 123 ASSAAAGKTPPSRVPAEPSSRRGASKR------RESWRTDGERLRSGR--------GCAG 168
A + AA +TP +R P + R S R + R G GR G G
Sbjct: 8 AKAGAAARTPAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGG 67
Query: 169 AA-------RGPDASLDT-RREGWPRAAVVGRHE----ARRLKPGV-----SVSSSLSPG 211
A GP S T R R GR E A+ PG S + PG
Sbjct: 68 ATIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPG 127
Query: 212 PPLQ---RSSSLNETLRGRRPPGPAPAA--AGATRGTAAPPGRDPSAWFLDSASACPT-- 264
P Q R S+ RG+ P +A AGA R T+ P PS + A T
Sbjct: 128 PLGQKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEV 187
Query: 265 --PLAARSWHPFVANKLCGRGKGAGGGASRPKEGVGSGRARAWEPRGGRESGRSRRRKSL 322
P A S P + G K + R GG + SR S
Sbjct: 188 GLPRPAPSARPRPPTE--GPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSS 245
Query: 323 LEDLQTEATLWPS-REVPREPSRPSCPQGVAETHTTAERAQLRRLAARAPRPPRATSLRA 381
L + A PS R PR P+ PS P + +A RPP+ T R
Sbjct: 246 ATPLSSPARSGPSARGTPRAPAHPSQP---------------KPKGLQALRPPQVTPPRK 290
Query: 382 ETPPAQG 388
+ PA G
Sbjct: 291 DAAPALG 297
Score = 33.5 bits (75), Expect = 0.35
Identities = 70/267 (26%), Positives = 92/267 (34%), Gaps = 35/267 (13%)
Query: 31 RSCCCCGRRSLPSVSGPVRGRAERRPARGKHVRGGGVGGCRDSRAGGSHAAPSGLGVPGD 90
RS G R SGP G AR G VG R + + G
Sbjct: 153 RSALSAGARR--DTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVS 210
Query: 91 SESALGLLEPGPPKSLRISVTLGQAPRAGPSAASSAAAGKTP----PS-----RVPAEPS 141
S S EP P R S G A S +SSA +P PS R PA PS
Sbjct: 211 SASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPS 270
Query: 142 SRRGASKRRESWRTDGERLRSGRGCAGAARGPDAS--LDTRREGWPRAAVVGRHE----- 194
+ K ++ R ++ R A A GP +S L T +A V +
Sbjct: 271 QPK--PKGLQALRP--PQVTPPRKDAAPALGPLSSSPLATPSPSGTKARPVPPPDNAATP 326
Query: 195 -ARRLKPGVSVSSSLSPGPPLQRSSSLNETLRGRRPPGPAPAAAGATRGT---------- 243
L P +++ L PP + +TL PP P+ A + T
Sbjct: 327 LPATLPPSPPLATPLPLAPPSPSAPPSLQTLPS--PPATPPSQAPPSMTTPPMQAPPSLQ 384
Query: 244 AAPPGRDPSAWFLDSASACPTPLAARS 270
PP + P + S A P+PLA S
Sbjct: 385 TIPPIQVPHSLTSPSLQAPPSPLALSS 411
Score = 33.1 bits (74), Expect = 0.46
Identities = 61/258 (23%), Positives = 88/258 (34%), Gaps = 36/258 (13%)
Query: 100 PGPPKSLRISVTLGQAPRAGPSAASSAA-AGKTPPSRVPAEPSSRRGASKRRESWRTDGE 158
P PP SL +S P+A P+ A+ A +PP+ P + AS T
Sbjct: 770 PSPPASLPMSPLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPP 829
Query: 159 RLRSGRGCAGAARGPDASLDTRREGWPRAAVVGRHEARRLKPGVSVSSSLSPGPPLQRSS 218
+ P + R G + G ++ +L+PGPP S
Sbjct: 830 QAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTS---VSGPRLTLALAPGPPPPPSR 886
Query: 219 SLNETLRGRRPPGPAPAA-----------AGATRGTAAPPGRD-------PSAWFLDSAS 260
S + TL G G + +A +G G AA P D P+AW A
Sbjct: 887 SPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAP 946
Query: 261 ACP---TPLAARSWHPFV----ANKLCGRGKGAGGGASRPKEGV-------GSGRARAWE 306
P A W P A+ LC + G ++ P G G+ +A
Sbjct: 947 PLAFRGAPGAPLPWPPATGPGSADGLCTIYETEGPESATPAPGALDPGPSPGTSGGKAAA 1006
Query: 307 PRGGRESGRSRRRKSLLE 324
G S RS ++ L E
Sbjct: 1007 GAGAGASSRSPKQARLGE 1024
>gi|239741896 PREDICTED: hypothetical protein XP_002342335 [Homo
sapiens]
Length = 347
Score = 43.9 bits (102), Expect = 3e-04
Identities = 53/175 (30%), Positives = 67/175 (38%), Gaps = 38/175 (21%)
Query: 26 AGRCARSCCCCGRRSLPSVSG-----PVRGRAERRPARGKHVRGGGVG-GCRDSRAGGSH 79
AGR + C G +S+ S P GR + R A G G G GCRDS
Sbjct: 121 AGRASPEPCRRGAQSMEPQSRAWESQPADGRKQSREAPRSGYEGDGSGRGCRDS------ 174
Query: 80 AAPSGLGVPGDSESALGLLEPGPPKSLRISVTLGQAPRA--GPSAASSAAAGKTPPSRVP 137
G P + +L E PK L G + R P+A S+AA + PP+ +P
Sbjct: 175 ----GATYPAGARRSLAEAERVGPKPLPEQERSGASGRCLPAPAAFSAAAPARRPPACLP 230
Query: 138 -------AEPSSRRGA------------SKRRESWRTDGERLRSGRG-CAGAARG 172
A PSS R A + RR+ G RG CAG RG
Sbjct: 231 EGEDAPVAPPSSARPALPSFLLRPSGYLAARRQRGPGSGAAETGFRGSCAGCGRG 285
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 43.1 bits (100), Expect = 4e-04
Identities = 56/194 (28%), Positives = 73/194 (37%), Gaps = 22/194 (11%)
Query: 65 GGVGGCRDSRAGGSHAAPSGLGVPGDSESALGLLEPGPPKSLRISVTLGQAPRAGPSAAS 124
G G + + GS+ AP G PG A PGPP I+ + G GP+
Sbjct: 348 GAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPP---GINGSPGGKGEMGPAGIP 404
Query: 125 SA-----AAGKTPPSRVPAEPSSRRGASKRRESWRTDGERLRSGRGCAGAARGPDASLDT 179
A A G P+ P R GA + ++ R RG AG P A +
Sbjct: 405 GAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGED 464
Query: 180 RREGWPRAAVVGRHEARRLKPGVSVSSSLSPGPPLQRSSSLNETLRGRRPPG---PAPAA 236
++G P G A L PG + G P R + + G + P AP
Sbjct: 465 GKDGSP-----GEPGANGL-PGAAGER----GAPGFRGPAGPNGIPGEKGPAGERGAPGP 514
Query: 237 AGATRGTAAPPGRD 250
AG RG A PGRD
Sbjct: 515 AG-PRGAAGEPGRD 527
Score = 40.4 bits (93), Expect = 0.003
Identities = 82/330 (24%), Positives = 106/330 (32%), Gaps = 46/330 (13%)
Query: 42 PSVSGPVRGRAERRPARGKHVRGGGVGGCRDSRAGGSHAAPSGLGVPGDSESALGLLEPG 101
P +G G+ ER A G+ GG G G P GV G+ S G G
Sbjct: 815 PGQNGEPGGKGERG-APGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAG 873
Query: 102 PPKSLRISVTLGQAPRAGPSAASSAAAGKTPPSRVPAEPSSRRGASKRRESWRTDGERLR 161
P + + G GP S + PP P+ GA G+ +
Sbjct: 874 FPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPG-----PAGNTGAPGSPGVSGPKGDAGQ 928
Query: 162 SGRGCAGAARGPDASLDTRREGWPRAAVVGRHEARRL--KPGVSVSSSLSPGPPLQRSSS 219
G + A+GP + + G AR L PG+ SPGP + S
Sbjct: 929 PGEKGSPGAQGPPGAPGP-------LGIAGITGARGLAGPPGMPGPRG-SPGPQGVKGES 980
Query: 220 LN---ETLRGRRPPGPAPAAAGATRGTAAPPGRD--PSAWFLDSASACPTPLAARS---- 270
L G R P P P GTA PGRD P + L P R
Sbjct: 981 GKPGANGLSGERGP-PGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGS 1039
Query: 271 -------WHPFVANKLCGRGKGAGGGASRPKEGVG----SGRARAWEPRGGR-ESGRSRR 318
HP + GK G S P G +G A P+G R + G +
Sbjct: 1040 PGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGE 1099
Query: 319 RKSLLEDLQTEATLWPSREVPREPSRPSCP 348
R + A + R P P P P
Sbjct: 1100 RGA--------AGIKGHRGFPGNPGAPGSP 1121
Score = 38.9 bits (89), Expect = 0.008
Identities = 84/322 (26%), Positives = 104/322 (32%), Gaps = 61/322 (18%)
Query: 37 GRRSLPSVSGPVRGRAERRPARGKHVRGGGVGGCRDSRAGGSHAAPSGLGVPGDSESALG 96
G R P +GP R A G+ R G GG G P G PG
Sbjct: 507 GERGAPGPAGP-------RGAAGEPGRDGVPGG------PGMRGMPGSPGGPGSDG---- 549
Query: 97 LLEPGPPKSLRISVTLGQAPRAGPSAASSAAAGKTPPSRVPAEPSSRRGASKRRESWRTD 156
+PGPP S G++ R GP S G+ P P GA + +
Sbjct: 550 --KPGPPGS------QGESGRPGP-PGPSGPRGQPGVMGFPG-PKGNDGAPGK------N 593
Query: 157 GERLRSGRGCAGAARGPDASLDTRREGWPRAAVVGRHEARRLKPGVSVSSSL--SPGPPL 214
GE R G G G P + +T +G P G + PG L + GPP
Sbjct: 594 GE--RGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPG 651
Query: 215 QRSSSLNETLRGRRPPGPAPAAAGATRGTAAPPGRDP----SAWFLDSASACPTPLAARS 270
+ G + AP A G AP R P A L + P P
Sbjct: 652 ENGKPGEP---GPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEG--- 705
Query: 271 WHPFVANKLCGRGKGAGGGASRPKEGVGSGRARAWEPRGGRESGRSRRRKSLLEDLQTEA 330
GKGA G P G RGG S + K E A
Sbjct: 706 ------------GKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKG--EPGGPGA 751
Query: 331 TLWPSREVPREPSRPSCPQGVA 352
P ++ PR P+ P P G A
Sbjct: 752 DGVPGKDGPRGPTGPIGPPGPA 773
Score = 38.9 bits (89), Expect = 0.008
Identities = 56/217 (25%), Positives = 72/217 (33%), Gaps = 64/217 (29%)
Query: 37 GRRSLPSVSGPVR--GRAERRPARGKHVRGGGVGGCRDSRAGGSHAAPSGLGVPGDSESA 94
G + LP ++G GR + G R G GG D GS AP G PG
Sbjct: 996 GPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGP---- 1051
Query: 95 LGLLEPGPPKSLRISVTLGQAPRAGPSAASSAAAGKTPPSRVPAEPSSRRGASKRRESWR 154
PGP S G++ AGP+ A A + P P P +G +
Sbjct: 1052 -----PGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPG--PQGPRGDKGET------- 1097
Query: 155 TDGERLRSG-RGCAGAARGPDASLDTRREGWPRAAVVGRHEARRLKPGVSVSSSLSPGPP 213
GER +G +G G P A PG SPGP
Sbjct: 1098 --GERGAAGIKGHRGFPGNPGA------------------------PG-------SPGPA 1124
Query: 214 LQRSSSLNETLRGRRPPGPAPAAAGATRGTAAPPGRD 250
Q+ + P PA G + PPG+D
Sbjct: 1125 GQQGAI----------GSPGPAGPRGPVGPSGPPGKD 1151
Score = 36.2 bits (82), Expect = 0.054
Identities = 51/188 (27%), Positives = 68/188 (36%), Gaps = 20/188 (10%)
Query: 77 GSHAAPSGLGVPGDSESALGLLEPGPPKSLRISVTLGQAPRAG-PSAASSAAAGKTP--- 132
GS +P G PG+ A PGPP ++ S G+ +G P P
Sbjct: 192 GSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIK 251
Query: 133 -PSRVPAEPSSR--RGASKRR-ESWRTDGERLRSGRGCAG--AARGP----DASLDTRRE 182
P+ +P P + RG R E T L+ G G A GP A + R
Sbjct: 252 GPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRP 311
Query: 183 GWPRAAVVGRHEARRLKPGVSVSSSLSPGPPLQRSSSLNETLRGRRPPGPAPAAAGA--T 240
G P AA ++ R G PGPP + +G P +P + GA
Sbjct: 312 GLPGAAGARGNDGARGSDG----QPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQ 367
Query: 241 RGTAAPPG 248
RG P G
Sbjct: 368 RGEPGPQG 375
Score = 30.8 bits (68), Expect = 2.3
Identities = 51/217 (23%), Positives = 63/217 (29%), Gaps = 29/217 (13%)
Query: 37 GRRSLPSVSGPVRGRAERRPARGKHVRG-GGVGGCRDSRAGGSHAAPSG----LGVPGDS 91
G + P +GP + + P + ++G G GG P G G PG
Sbjct: 615 GPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGK 674
Query: 92 ESALGLLEPGPPKSLRISVTLGQAPRAGPSAASSAAAGKTPPSRVPAEPSSRRGASKRRE 151
A E GPP G A GP AA PP GA+
Sbjct: 675 GDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPP-----------GAAGTPG 723
Query: 152 SWRTDGERLRSGRGCAGAARGPDASLDTRREGWPRAAVVGRHEARRLKPGVSVSSSLSPG 211
GER G P D G P A V + R G + P
Sbjct: 724 LQGMPGER--------GGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTG-----PIGPP 770
Query: 212 PPLQRSSSLNETLRGRRPPGPAPAAAGATRGTAAPPG 248
P + E P P + RG PPG
Sbjct: 771 GPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPG 807
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein
[Homo sapiens]
Length = 3969
Score = 42.4 bits (98), Expect = 8e-04
Identities = 74/270 (27%), Positives = 105/270 (38%), Gaps = 31/270 (11%)
Query: 83 SGLGVPGDSESA--LGLLEPGPPKSLRISVTLGQAPRAGPSAASSAA-AGKTPPSRVPAE 139
SG G + SA L G + L +APR PS A S T PS +
Sbjct: 665 SGFSASGTAASARLFSPLHSGTRFDMHKRSPLLRAPRFTPSEAHSRIFESVTLPSNRTSA 724
Query: 140 PSSRRGASKRRESWRTDGERLRSGRGCAGAARGPDASLDTRREGWPRAAVVGRHEARRLK 199
+S G S R+ R +RS R P S+ TR + + E L
Sbjct: 725 GTSSSGVSNRKRK-RKVFSPIRS------EPRSPSHSMRTR------SGRLSSSELSPLT 771
Query: 200 PGVSVSSSLSPGPPLQRSSSLNETLRGRRPPGPAPAAAGATRGTAAPPGRDPSAWFLDSA 259
P SVSSSLS +S+LN T P + +G + P + SA +
Sbjct: 772 PPSSVSSSLSISVSPLATSALNPTFTF---PSHSLTQSGESAEKNQRPRKQTSAPAEPFS 828
Query: 260 SACPTPLAARSWHPFVANKLCGRGKG-AGGGASRPKEGVGS-------GRARAWEPRGGR 311
S+ PTPL W + GR K A S+ ++ S R R E R
Sbjct: 829 SSSPTPLF--PWFTPGSQTERGRNKDKAPEELSKDRDADKSVEKDKSRERDREREKENKR 886
Query: 312 ESGRSRRRKSLLEDLQTEATLWPSREVPRE 341
ES + +R+K ++Q+ + L+P V +E
Sbjct: 887 ESRKEKRKKG--SEIQSSSALYPVGRVSKE 914
Score = 33.5 bits (75), Expect = 0.35
Identities = 41/129 (31%), Positives = 49/129 (37%), Gaps = 25/129 (19%)
Query: 54 RRPARGKHVRGGGVGGCRDSRAGGSHAAPSGL-GVPGDSESALGLLEPGPPKSLRISVTL 112
R PAR GGG GG R GL G P AL LL PGPP
Sbjct: 8 RFPARPGTTGGGGGGGRR------------GLGGAPRQRVPAL-LLPPGPPVG------- 47
Query: 113 GQAPRAGPS----AASSAAAGKTPPSRVPAEPSSRRGASKRRESWRTDGERLRSGRGCAG 168
G P A PS AA++AAAG + ++ +S S + SG
Sbjct: 48 GGGPGAPPSPPAVAAAAAAAGSSGAGVPGGAAAASAASSSSASSSSSSSSSASSGPALLR 107
Query: 169 AARGPDASL 177
G DA+L
Sbjct: 108 VGPGFDAAL 116
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 42.4 bits (98), Expect = 8e-04
Identities = 81/314 (25%), Positives = 100/314 (31%), Gaps = 43/314 (13%)
Query: 116 PRAGPSAASSAAAGKTPPSRVPAEPSSRRGA----SKRRES--WRTDGERLRSGRGCAGA 169
P PSAA++ AAG +P S RGA KR E R D + + G
Sbjct: 30 PPPSPSAAAAGAAGARGSET--GDPGSPRGAEEPGKKRHERLFHRQDALWISTSSAGTGG 87
Query: 170 ARGPDASLDTRREGWPRAAVVGRH-EARRLKPGVSVSSSLSPGP-----------PLQRS 217
A P S P + GR + PG +S LSP P PL S
Sbjct: 88 AEPPALSPAPASPARPVSPAPGRRLSLWAVPPGPPLSGGLSPDPKPGGAPTSSRRPLLSS 147
Query: 218 SSLNETLRGRRPPGPAPAAAGATRGTAA--------PPGRDPSAWFLDSASACPTPLAA- 268
S R G P ++ GT + PP P S + A
Sbjct: 148 PSWGGPEPEGRAGGGIPGSSSPHPGTGSRRLKVAPPPPAPKPCKTVTTSGAKAGGGKGAG 207
Query: 269 --RSW-----HPFVANKLCGRGKGAGGGASRPKEGVGSGRARAWEPRGGRESGRSRRRKS 321
SW P V G GA A+ G G + A GG +G R K
Sbjct: 208 SRLSWPESEGKPRVKGSKSSAGTGASVSAAATAAAAGGGGSTA-STSGGVGAGAGARGK- 265
Query: 322 LLEDLQTEATLWPSREVPREPSRPSCPQGVAETHTTAERAQLRRLAARAPRPPRATSLRA 381
L TL S P P+ P + T + A P PP
Sbjct: 266 LSPRKGKSKTLDNSDLHPGPPAGSPPPLTLPPTPSPATAVTAASAQPPGPAPPITLE--- 322
Query: 382 ETPPAQGLQHGNLG 395
PPA GL+ G G
Sbjct: 323 --PPAPGLKRGREG 334
Score = 36.6 bits (83), Expect = 0.041
Identities = 47/174 (27%), Positives = 61/174 (35%), Gaps = 23/174 (13%)
Query: 72 DSRAGGSHAAPSGLGVPGDSESALGLLEPGP-PKSLRISVTLGQAPRAGPSAASSAAAGK 130
+ RAGG S PG L + P P PK + T G + A GK
Sbjct: 156 EGRAGGGIPGSSSPH-PGTGSRRLKVAPPPPAPKPCKTVTTSG----------AKAGGGK 204
Query: 131 TPPSRVPAEPSSRRGASKRRESWRTDGERLRSGRGCAGAARGPDASLDTRREGWPRAAVV 190
SR+ S + K +S G + S A AA G ++ T A
Sbjct: 205 GAGSRLSWPESEGKPRVKGSKSSAGTGASV-SAAATAAAAGGGGSTASTSGGVGAGAGAR 263
Query: 191 GRHEARRLKPGVSVSSSLSPGPPLQRSSSLN----------ETLRGRRPPGPAP 234
G+ R+ K +S L PGPP L T +PPGPAP
Sbjct: 264 GKLSPRKGKSKTLDNSDLHPGPPAGSPPPLTLPPTPSPATAVTAASAQPPGPAP 317
Score = 33.1 bits (74), Expect = 0.46
Identities = 43/163 (26%), Positives = 54/163 (33%), Gaps = 21/163 (12%)
Query: 10 APACGWEKICQECKPSAGRCARSCCCCGRRSLPSVSGPVRGRAERRPA-------RGKHV 62
AP K C+ S + R S P G R + + A
Sbjct: 181 APPPPAPKPCKTVTTSGAKAGGGKGAGSRLSWPESEGKPRVKGSKSSAGTGASVSAAATA 240
Query: 63 RGGGVGGCRDSRAGGSHAAPSGLGVPGDSESALGL--------LEPGPPKSLRISVTL-- 112
G GG S +GG A G G G G L PGPP +TL
Sbjct: 241 AAAGGGGSTASTSGGVGA---GAGARGKLSPRKGKSKTLDNSDLHPGPPAGSPPPLTLPP 297
Query: 113 GQAPRAGPSAASSAAAGKTPPSRV-PAEPSSRRGASKRRESWR 154
+P +AAS+ G PP + P P +RG R S R
Sbjct: 298 TPSPATAVTAASAQPPGPAPPITLEPPAPGLKRGREGGRASTR 340
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.130 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,315,246
Number of Sequences: 37866
Number of extensions: 1346926
Number of successful extensions: 10759
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 1093
Number of HSP's that attempted gapping in prelim test: 8794
Number of HSP's gapped (non-prelim): 2784
length of query: 402
length of database: 18,247,518
effective HSP length: 105
effective length of query: 297
effective length of database: 14,271,588
effective search space: 4238661636
effective search space used: 4238661636
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.