Guide to the Human Genome
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Name: LOC100289685 Sequence: fasta or formatted (114aa) NCBI GI: 239749994
Description:

PREDICTED: hypothetical protein XP_002347233

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         11           2
 C cysteine            1.8          2           1
 D aspartate           1.8          2           1
 E glutamate           3.5          4           2
 F phenylalanine       1.8          2           1
 G glycine             7.0          8           1
 H histidine           3.5          4           1
 I isoleucine          1.8          2           1
 K lysine              3.5          4           1
 L leucine            12.3         14           2
 M methionine          2.6          3           1
 N asparagine          3.5          4           1
 P proline            10.5         12           2
 Q glutamine           5.3          6           1
 R arginine            9.6         11           1
 S serine              9.6         11           3
 T threonine           7.0          8           2
 V valine              3.5          4           1
 W tryptophan          0.9          1           1
 Y tyrosine            0.9          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347233 
LOC100292598          1.000   PREDICTED: hypothetical protein 
LOC100289498          1.000   PREDICTED: hypothetical protein XP_002343094 
ZBTB4                 0.033   zinc finger and BTB domain containing 4 
ZBTB4                 0.033   zinc finger and BTB domain containing 4 
LOC100291932          0.029   PREDICTED: hypothetical protein XP_002345595 
LOC100290844          0.029   PREDICTED: hypothetical protein XP_002348320 
LOC100287739          0.029   PREDICTED: hypothetical protein XP_002342280 
EPX                   0.029   eosinophil peroxidase 
PLEKHA4               0.019   pleckstrin homology domain containing family A memb...
C19orf61              0.019   hypothetical protein LOC56006 
NUMBL                 0.019   numb homolog (Drosophila)-like 
RFNG                  0.014   radical fringe 
RGS9                  0.014   regulator of G-protein signaling 9 isoform 2 
RGS9                  0.014   regulator of G-protein signaling 9 isoform 1 
SYT12                 0.014   synaptotagmin XII 
CDKN1C                0.014   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.014   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.014   cyclin-dependent kinase inhibitor 1C isoform a 
KIAA0408              0.014   hypothetical protein LOC9729 
ZNF536                0.014   zinc finger protein 536 
SF1                   0.010   splicing factor 1 isoform 3 
LCA5                  0.010   Leber congenital amaurosis 5 
LCA5                  0.010   Leber congenital amaurosis 5 
WIPF3                 0.010   WAS/WASL interacting protein family, member 3 [Homo...
FILIP1L               0.010   filamin A interacting protein 1-like isoform 3 [Hom...
FILIP1L               0.010   filamin A interacting protein 1-like isoform 2 [Hom...
FILIP1L               0.010   filamin A interacting protein 1-like isoform 1 [Hom...
LOC100294299          0.010   PREDICTED: hypothetical protein XP_002344099 
ZNF526                0.010   zinc finger protein 526 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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