Guide to the Human Genome
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Name: LOC100290093 Sequence: fasta or formatted (246aa) NCBI GI: 239748159
Description:

PREDICTED: hypothetical protein XP_002346542

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.4         33           3
 C cysteine            0.8          2           1
 D aspartate           2.4          6           1
 E glutamate           4.1         10           1
 F phenylalanine       1.2          3           1
 G glycine            12.2         30           2
 H histidine           1.6          4           1
 I isoleucine          0.8          2           1
 K lysine              4.1         10           1
 L leucine             8.1         20           2
 M methionine          0.4          1           1
 N asparagine          1.6          4           1
 P proline            11.0         27           3
 Q glutamine           3.3          8           1
 R arginine           15.9         39           3
 S serine              8.5         21           3
 T threonine           3.7          9           1
 V valine              4.1         10           1
 W tryptophan          2.4          6           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346542 
LOC100293766          0.722   PREDICTED: hypothetical protein 
LOC100287789          0.722   PREDICTED: hypothetical protein XP_002342381 
FLJ37078              0.040   hypothetical protein LOC222183 
LOC100291634          0.038   PREDICTED: hypothetical protein XP_002346062 
LOC100287920          0.038   PREDICTED: hypothetical protein XP_002344198 
LOC100287232          0.038   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.038   PREDICTED: hypothetical protein 
ZNF469                0.035   zinc finger protein 469 
LOC100293375          0.035   PREDICTED: hypothetical protein 
LOC100291076          0.033   PREDICTED: hypothetical protein XP_002347846 
LOC100129810          0.033   PREDICTED: hypothetical protein 
LOC100129810          0.033   PREDICTED: hypothetical protein 
LOC100288473          0.031   PREDICTED: hypothetical protein XP_002343336 
LOC728650             0.029   PREDICTED: hypothetical protein 
LOC100293975          0.029   PREDICTED: hypothetical protein 
HNRNPUL2              0.029   heterogeneous nuclear ribonucleoprotein U-like 2 [H...
LOC100288108          0.027   PREDICTED: hypothetical protein 
LOC100288108          0.027   PREDICTED: hypothetical protein XP_002342919 
LOC100129810          0.027   PREDICTED: hypothetical protein 
LOC100290023          0.027   PREDICTED: hypothetical protein XP_002348147 
LOC100129810          0.027   PREDICTED: hypothetical protein 
AGER                  0.025   advanced glycosylation end product-specific receptor...
LOC100292234          0.025   PREDICTED: hypothetical protein 
LOC100290812          0.025   PREDICTED: hypothetical protein XP_002347678 
LOC100290708          0.025   PREDICTED: hypothetical protein XP_002346660 
LOC100288205          0.025   PREDICTED: hypothetical protein XP_002343496 
LOC100288955          0.025   PREDICTED: hypothetical protein XP_002342507 
SMAD6                 0.025   SMAD family member 6 isoform 1 
LOC100292057          0.025   PREDICTED: hypothetical protein XP_002345830 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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