Guide to the Human Genome
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Name: MACROD2 Sequence: fasta or formatted (425aa) NCBI GI: 117968621
Description:

MACRO domain containing 2 isoform 1

Referenced in:

Gene Structure
Histones, Related Proteins, and Modifying Enzymes
Additional Genes in Development

Other entries for this name:
alt prot [213aa] MACRO domain containing 2 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         25           2
 C cysteine            2.1          9           1
 D aspartate           7.5         32           2
 E glutamate          14.1         60           4
 F phenylalanine       1.9          8           2
 G glycine             7.1         30           4
 H histidine           2.1          9           2
 I isoleucine          5.2         22           2
 K lysine              8.7         37           4
 L leucine             5.9         25           2
 M methionine          1.9          8           1
 N asparagine          6.1         26           2
 P proline             4.5         19           1
 Q glutamine           3.3         14           1
 R arginine            3.3         14           2
 S serine              6.4         27           2
 T threonine           4.9         21           1
 V valine              6.1         26           1
 W tryptophan          0.7          3           1
 Y tyrosine            2.4         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   MACRO domain containing 2 isoform 1 
MACROD2               0.413   MACRO domain containing 2 isoform 2 
MACROD1               0.267   MACRO domain containing 1 
GDAP2                 0.113   ganglioside induced differentiation associated prot...
GDAP2                 0.113   ganglioside induced differentiation associated protei...
PARP14                0.060   poly (ADP-ribose) polymerase family, member 14 [Hom...
H2AFY                 0.058   H2A histone family, member Y isoform 1 
PARP9                 0.050   poly (ADP-ribose) polymerase family, member 9 isofo...
PARP9                 0.050   poly (ADP-ribose) polymerase family, member 9 isofo...
PARP9                 0.050   poly (ADP-ribose) polymerase family, member 9 isofo...
PARP9                 0.050   poly (ADP-ribose) polymerase family, member 9 isofo...
PARP9                 0.050   poly (ADP-ribose) polymerase family, member 9 isofo...
PARP9                 0.050   poly (ADP-ribose) polymerase family, member 9 isofo...
H2AFY                 0.050   H2A histone family, member Y isoform 2 
H2AFY                 0.050   H2A histone family, member Y isoform 2 
H2AFY                 0.050   H2A histone family, member Y isoform 3 
PARP15                0.042   poly (ADP-ribose) polymerase family, member 15 isof...
MDN1                  0.040   MDN1, midasin homolog 
RP1L1                 0.030   retinitis pigmentosa 1-like 1 
SETD1B                0.030   SET domain containing 1B 
NSBP1                 0.029   nucleosomal binding protein 1 
ERICH1                0.029   glutamate-rich 1 
CLSPN                 0.029   claspin 
NEFH                  0.027   neurofilament, heavy polypeptide 200kDa 
HRC                   0.027   histidine rich calcium binding protein precursor [Hom...
PELP1                 0.026   proline, glutamic acid and leucine rich protein 1 [...
RPGR                  0.026   retinitis pigmentosa GTPase regulator isoform C [Hom...
DMP1                  0.026   dentin matrix acidic phosphoprotein 1 isoform 1 precu...
DMP1                  0.026   dentin matrix acidic phosphoprotein 1 isoform 2 pre...
NEFM                  0.026   neurofilament, medium polypeptide 150kDa isoform 1 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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