Guide to the Human Genome
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Name: AGAP8 Sequence: fasta or formatted (663aa) NCBI GI: 117956371
Description:

ArfGAP with GTPase domain, ankyrin repeat and PH domain 8

Referenced in:

ADP-Ribosylation Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         44           3
 C cysteine            3.0         20           1
 D aspartate           4.5         30           2
 E glutamate           6.5         43           2
 F phenylalanine       1.8         12           1
 G glycine             5.6         37           3
 H histidine           3.2         21           2
 I isoleucine          5.1         34           2
 K lysine              5.6         37           3
 L leucine             8.4         56           3
 M methionine          2.6         17           1
 N asparagine          4.4         29           2
 P proline             5.1         34           3
 Q glutamine           5.1         34           3
 R arginine            4.4         29           2
 S serine             12.1         80           3
 T threonine           7.1         47           2
 V valine              5.1         34           2
 W tryptophan          1.8         12           1
 Y tyrosine            2.0         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ArfGAP with GTPase domain, ankyrin repeat and PH do... 
AGAP4                 0.990   ArfGAP with GTPase domain, ankyrin repeat and PH do...
AGAP7                 0.977   ArfGAP with GTPase domain, ankyrin repeat and PH do...
AGAP6                 0.969   centaurin, gamma-like family, member 3 
AGAP5                 0.960   ArfGAP with GTPase domain, ankyrin repeat and PH do...
AGAP9                 0.947   PREDICTED: ArfGAP with GTPase domain, ankyrin repea...
AGAP10                0.945   PREDICTED: ArfGAP with GTPase domain, ankyrin repea...
AGAP11                0.721   ankyrin repeat and GTPase domain Arf GTPase activat...
AGAP1                 0.593   centaurin, gamma 2 isoform 2 
AGAP3                 0.411   centaurin, gamma 3 isoform a 
AGAP1                 0.410   centaurin, gamma 2 isoform 1 
AGAP2                 0.336   centaurin, gamma 1 isoform PIKE-S 
AGAP2                 0.330   centaurin, gamma 1 isoform PIKE-L 
LOC100294038          0.245   PREDICTED: similar to centaurin, gamma-like family,...
CCNYL2                0.114   PREDICTED: cyclin Y-like 2 
CCNYL2                0.114   PREDICTED: cyclin Y-like 2 
CCNYL2                0.114   PREDICTED: cyclin Y-like 2 
ACAP3                 0.089   ArfGAP with coiled-coil, ankyrin repeat and PH doma...
ACAP2                 0.079   centaurin, beta 2 
ACAP1                 0.076   centaurin beta1 
ASAP1                 0.076   development and differentiation enhancing factor 1 [...
GIT2                  0.073   G protein-coupled receptor kinase interacting ArfGA...
GIT2                  0.073   G protein-coupled receptor kinase interacting ArfGA...
GIT2                  0.073   G protein-coupled receptor kinase interacting ArfGAP...
GIT2                  0.073   G protein-coupled receptor kinase interacting ArfGAP...
GIT2                  0.073   G protein-coupled receptor kinase interacting ArfGAP...
GIT2                  0.073   G protein-coupled receptor kinase interacting ArfGA...
GIT1                  0.071   G protein-coupled receptor kinase interactor 1 isof...
GIT1                  0.071   G protein-coupled receptor kinase interactor 1 isofo...
ASAP3                 0.068   ArfGAP with SH3 domain, ankyrin repeat and PH domai...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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