Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SLC5A6 Sequence: fasta or formatted (635aa) NCBI GI: 10863879
Description:

solute carrier family 5 (sodium-dependent vitamin transporter), member 6

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         48           2
 C cysteine            2.5         16           2
 D aspartate           2.2         14           1
 E glutamate           2.0         13           1
 F phenylalanine       6.3         40           2
 G glycine             9.6         61           2
 H histidine           1.4          9           1
 I isoleucine          4.7         30           2
 K lysine              1.7         11           1
 L leucine            14.3         91           3
 M methionine          3.9         25           2
 N asparagine          1.6         10           1
 P proline             5.2         33           2
 Q glutamine           3.6         23           2
 R arginine            3.6         23           1
 S serine              9.1         58           3
 T threonine           6.1         39           2
 V valine              8.8         56           2
 W tryptophan          1.4          9           1
 Y tyrosine            4.1         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 5 (sodium-dependent vitamin tr... 
SLC5A8                0.384   solute carrier family 5 (iodide transporter), membe...
SLC5A12               0.367   solute carrier family 5 (sodium/glucose cotransport...
SLC5A5                0.337   solute carrier family 5 (sodium iodide symporter), me...
SLC5A10               0.089   solute carrier family 5 (sodium/glucose cotransport...
SLC5A10               0.088   solute carrier family 5 (sodium/glucose cotransport...
SLC5A11               0.076   solute carrier family 5 (sodium/glucose cotransporte...
SLC5A1                0.076   solute carrier family 5 (sodium/glucose cotransporter...
SLC5A4                0.072   solute carrier family 5 (low affinity glucose cotran...
SLC5A9                0.066   solute carrier family 5 (sodium/glucose cotransport...
SLC5A2                0.060   solute carrier family 5 (sodium/glucose cotransporter...
SLC5A9                0.060   solute carrier family 5 (sodium/glucose cotransport...
SLC5A3                0.051   solute carrier family 5 (inositol transporters), me...
SLC5A7                0.027   solute carrier family 5 (choline transporter), membe...
SLC39A1               0.008   solute carrier family 39 (zinc transporter), member ...
CBFA2T3               0.006   myeloid translocation gene on chromosome 16 isoform ...
CBFA2T3               0.006   myeloid translocation gene on chromosome 16 isoform ...
ALDOB                 0.006   aldolase B, fructose-bisphosphate 
UNC93B1               0.006   unc-93 homolog B1 
RUNX1T1               0.005   acute myelogenous leukemia 1 translocation 1 protein...
RUNX1T1               0.005   acute myelogenous leukemia 1 translocation 1 protein...
RUNX1T1               0.005   acute myelogenous leukemia 1 translocation 1 protein...
RUNX1T1               0.005   acute myelogenous leukemia 1 translocation 1 protein ...
SLC20A1               0.005   solute carrier family 20 (phosphate transporter), me...
SLC12A4               0.005   solute carrier family 12, member 4 isoform e 
SLC12A4               0.005   solute carrier family 12, member 4 isoform d 
SLC12A4               0.005   solute carrier family 12, member 4 isoform c 
SLC12A4               0.005   solute carrier family 12, member 4 isoform b 
SLC12A4               0.005   solute carrier family 12, member 4 isoform a 
HLA-E                 0.004   major histocompatibility complex, class I, E precurs...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press