Search of human proteins with 239748850

Search of human proteins with 239748850

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239748850 PREDICTED: similar to hCG1645245 [Homo sapiens]
         (169 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169169007 PREDICTED: similar to hCG1645245 [Homo sapiens]          338   1e-93
gi|239748850 PREDICTED: similar to hCG1645245 [Homo sapiens]          338   1e-93
gi|239742877 PREDICTED: similar to hCG1645245 [Homo sapiens]          338   1e-93
gi|15055539 ribosomal protein S2 [Homo sapiens]                       105   1e-23
gi|239752401 PREDICTED: hypothetical protein [Homo sapiens]            34   0.068
gi|239752318 PREDICTED: similar to hCG1647425 [Homo sapiens]           32   0.26 
gi|239746826 PREDICTED: similar to hCG1647425 [Homo sapiens]           32   0.26 
gi|239746918 PREDICTED: hypothetical protein [Homo sapiens]            32   0.34 
gi|188528641 SEC14 and spectrin domains 1 [Homo sapiens]               30   0.76 
gi|212274327 transmembrane protein 151B [Homo sapiens]                 30   0.76 
gi|118722349 RNA binding motif protein 12B [Homo sapiens]              30   0.76 
gi|21361458 Rho guanine nucleotide exchange factor (GEF) 17 [Hom...    30   0.99 
gi|239757331 PREDICTED: hypothetical protein [Homo sapiens]            29   1.7  
gi|239757070 PREDICTED: hypothetical protein [Homo sapiens]            29   1.7  
gi|239751841 PREDICTED: hypothetical protein [Homo sapiens]            29   1.7  
gi|239751580 PREDICTED: hypothetical protein [Homo sapiens]            29   1.7  
gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo ...    29   1.7  
gi|239746092 PREDICTED: hypothetical protein XP_002343656 [Homo ...    29   1.7  
gi|84626580 hypothetical protein LOC80178 [Homo sapiens]               29   2.2  
gi|169167062 PREDICTED: hypothetical protein LOC285556 [Homo sap...    28   2.9  
gi|113416182 PREDICTED: hypothetical protein LOC285556 [Homo sap...    28   2.9  
gi|113415686 PREDICTED: hypothetical protein LOC285556 [Homo sap...    28   2.9  
gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precurs...    28   2.9  
gi|14196457 protocadherin gamma subfamily A, 12 isoform 2 precur...    28   2.9  
gi|14196468 protocadherin gamma subfamily A, 4 isoform 2 precurs...    28   2.9  
gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precurs...    28   2.9  
gi|28195386 sex-determining region Y-box 2 [Homo sapiens]              28   3.8  
gi|134304840 KIAA0319 [Homo sapiens]                                   28   4.9  
gi|14141152 heterogeneous nuclear ribonucleoprotein M isoform a ...    28   4.9  
gi|157412270 heterogeneous nuclear ribonucleoprotein M isoform b...    28   4.9  

>gi|169169007 PREDICTED: similar to hCG1645245 [Homo sapiens]
          Length = 169

 Score =  338 bits (868), Expect = 1e-93
 Identities = 169/169 (100%), Positives = 169/169 (100%)

Query: 1   MPRGSGAEHHFLAQTFMGRRRGQPSTRIFSEKNGPGARSGEAAAGFQGQGLAPALSKAAS 60
           MPRGSGAEHHFLAQTFMGRRRGQPSTRIFSEKNGPGARSGEAAAGFQGQGLAPALSKAAS
Sbjct: 1   MPRGSGAEHHFLAQTFMGRRRGQPSTRIFSEKNGPGARSGEAAAGFQGQGLAPALSKAAS 60

Query: 61  ESPPDKEWCSITKSPCQVKDMKIKSLKVYLFSLSIKEFEVTDFLLGVPLKDKVLKLMFVQ 120
           ESPPDKEWCSITKSPCQVKDMKIKSLKVYLFSLSIKEFEVTDFLLGVPLKDKVLKLMFVQ
Sbjct: 61  ESPPDKEWCSITKSPCQVKDMKIKSLKVYLFSLSIKEFEVTDFLLGVPLKDKVLKLMFVQ 120

Query: 121 KQPKAGRRIRFKVIVTIRDCNDNVSLGVEWPKELLIAVCRTNILSIILV 169
           KQPKAGRRIRFKVIVTIRDCNDNVSLGVEWPKELLIAVCRTNILSIILV
Sbjct: 121 KQPKAGRRIRFKVIVTIRDCNDNVSLGVEWPKELLIAVCRTNILSIILV 169


>gi|239748850 PREDICTED: similar to hCG1645245 [Homo sapiens]
          Length = 169

 Score =  338 bits (868), Expect = 1e-93
 Identities = 169/169 (100%), Positives = 169/169 (100%)

Query: 1   MPRGSGAEHHFLAQTFMGRRRGQPSTRIFSEKNGPGARSGEAAAGFQGQGLAPALSKAAS 60
           MPRGSGAEHHFLAQTFMGRRRGQPSTRIFSEKNGPGARSGEAAAGFQGQGLAPALSKAAS
Sbjct: 1   MPRGSGAEHHFLAQTFMGRRRGQPSTRIFSEKNGPGARSGEAAAGFQGQGLAPALSKAAS 60

Query: 61  ESPPDKEWCSITKSPCQVKDMKIKSLKVYLFSLSIKEFEVTDFLLGVPLKDKVLKLMFVQ 120
           ESPPDKEWCSITKSPCQVKDMKIKSLKVYLFSLSIKEFEVTDFLLGVPLKDKVLKLMFVQ
Sbjct: 61  ESPPDKEWCSITKSPCQVKDMKIKSLKVYLFSLSIKEFEVTDFLLGVPLKDKVLKLMFVQ 120

Query: 121 KQPKAGRRIRFKVIVTIRDCNDNVSLGVEWPKELLIAVCRTNILSIILV 169
           KQPKAGRRIRFKVIVTIRDCNDNVSLGVEWPKELLIAVCRTNILSIILV
Sbjct: 121 KQPKAGRRIRFKVIVTIRDCNDNVSLGVEWPKELLIAVCRTNILSIILV 169


>gi|239742877 PREDICTED: similar to hCG1645245 [Homo sapiens]
          Length = 169

 Score =  338 bits (868), Expect = 1e-93
 Identities = 169/169 (100%), Positives = 169/169 (100%)

Query: 1   MPRGSGAEHHFLAQTFMGRRRGQPSTRIFSEKNGPGARSGEAAAGFQGQGLAPALSKAAS 60
           MPRGSGAEHHFLAQTFMGRRRGQPSTRIFSEKNGPGARSGEAAAGFQGQGLAPALSKAAS
Sbjct: 1   MPRGSGAEHHFLAQTFMGRRRGQPSTRIFSEKNGPGARSGEAAAGFQGQGLAPALSKAAS 60

Query: 61  ESPPDKEWCSITKSPCQVKDMKIKSLKVYLFSLSIKEFEVTDFLLGVPLKDKVLKLMFVQ 120
           ESPPDKEWCSITKSPCQVKDMKIKSLKVYLFSLSIKEFEVTDFLLGVPLKDKVLKLMFVQ
Sbjct: 61  ESPPDKEWCSITKSPCQVKDMKIKSLKVYLFSLSIKEFEVTDFLLGVPLKDKVLKLMFVQ 120

Query: 121 KQPKAGRRIRFKVIVTIRDCNDNVSLGVEWPKELLIAVCRTNILSIILV 169
           KQPKAGRRIRFKVIVTIRDCNDNVSLGVEWPKELLIAVCRTNILSIILV
Sbjct: 121 KQPKAGRRIRFKVIVTIRDCNDNVSLGVEWPKELLIAVCRTNILSIILV 169


>gi|15055539 ribosomal protein S2 [Homo sapiens]
          Length = 293

 Score =  105 bits (263), Expect = 1e-23
 Identities = 64/136 (47%), Positives = 81/136 (59%), Gaps = 6/136 (4%)

Query: 36  GARSGEAAAGFQGQGLAPALSK-----AASESPPDKEWCSITKSPCQVKDMKIKSLK-VY 89
           G   G   +G +G+G      +     A      DKEW  +TK    VKDMKIKSL+ +Y
Sbjct: 23  GGFRGGFGSGIRGRGRGRGRGRGRGRGARGGKAEDKEWMPVTKLGRLVKDMKIKSLEEIY 82

Query: 90  LFSLSIKEFEVTDFLLGVPLKDKVLKLMFVQKQPKAGRRIRFKVIVTIRDCNDNVSLGVE 149
           LFSL IKE E+ DF LG  LKD+VLK+M VQKQ +AG+R RFK  V I D N +V LGV+
Sbjct: 83  LFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVK 142

Query: 150 WPKELLIAVCRTNILS 165
             KE+  A+    IL+
Sbjct: 143 CSKEVATAIRGAIILA 158


>gi|239752401 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 250

 Score = 33.9 bits (76), Expect = 0.068
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 10  HFLAQTFMGRRRGQPSTRIFSEKNGPGARSGEAAAGFQGQGLAPALSKAASESPPDK 66
           H    TF  RRR  P  +   E+ GP        AG +G+   PAL+   S  PP K
Sbjct: 184 HICVYTFRRRRRAPPGRQRLEERTGP--------AGPEGKEQPPALASQTSSPPPLK 232


>gi|239752318 PREDICTED: similar to hCG1647425 [Homo sapiens]
          Length = 214

 Score = 32.0 bits (71), Expect = 0.26
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 5/83 (6%)

Query: 44  AGFQGQGLAPALSKAASESPPDKEWCSITKSPCQVKDMKIKSLKVYLFSLSIKEFEVTDF 103
           A F G+G   A  K A ++    E C   K   ++++MKIK +K  ++S ++      DF
Sbjct: 128 AAFGGKGKPDAAKKGAIKA----EKCKKKKEEDKMRNMKIKKIKFPMYS-ALTRLGDHDF 182

Query: 104 LLGVPLKDKVLKLMFVQKQPKAG 126
           L     KD  L++    + P +G
Sbjct: 183 LKIPKNKDAELRIWSYNRGPSSG 205


>gi|239746826 PREDICTED: similar to hCG1647425 [Homo sapiens]
          Length = 214

 Score = 32.0 bits (71), Expect = 0.26
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 5/83 (6%)

Query: 44  AGFQGQGLAPALSKAASESPPDKEWCSITKSPCQVKDMKIKSLKVYLFSLSIKEFEVTDF 103
           A F G+G   A  K A ++    E C   K   ++++MKIK +K  ++S ++      DF
Sbjct: 128 AAFGGKGKPDAAKKGAIKA----EKCKKKKEEDKMRNMKIKKIKFPMYS-ALTRLGDHDF 182

Query: 104 LLGVPLKDKVLKLMFVQKQPKAG 126
           L     KD  L++    + P +G
Sbjct: 183 LKIPKNKDAELRIWSYNRGPSSG 205


>gi|239746918 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 264

 Score = 31.6 bits (70), Expect = 0.34
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 8/52 (15%)

Query: 15  TFMGRRRGQPSTRIFSEKNGPGARSGEAAAGFQGQGLAPALSKAASESPPDK 66
           TF  RRR  P  +   E+ GP        AG +G+   PAL+   S  PP K
Sbjct: 203 TFRRRRRAPPGRQRLEERTGP--------AGPEGKEQPPALASQTSSPPPLK 246


>gi|188528641 SEC14 and spectrin domains 1 [Homo sapiens]
          Length = 696

 Score = 30.4 bits (67), Expect = 0.76
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 93  LSIKEFEVTDFLLGVPLKDKVLKLMFVQKQPKAGRRIRFKVIVTIRDCNDNVSLGVEWPK 152
           ++I+  E  D + GV ++D  L+    +      RR++   +V +  C ++ +  VEW  
Sbjct: 457 VTIENKENVDHIQGV-MEDMQLRKQRCEDMVDV-RRLKMLQMVQLFKCEEDAAQAVEWLS 514

Query: 153 ELLIAVCRTNI 163
           ELL A+ +T+I
Sbjct: 515 ELLDALLKTHI 525


>gi|212274327 transmembrane protein 151B [Homo sapiens]
          Length = 566

 Score = 30.4 bits (67), Expect = 0.76
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 13/70 (18%)

Query: 35 PGARSGEAAAGFQGQGLAPALSK---------AASESPPDKE----WCSITKSPCQVKDM 81
          PG+ +GE+AAG  G G  P +S+         AA E P  +E      S TKS C+    
Sbjct: 4  PGSAAGESAAGGGGGGGGPGVSEELTAAAAAAAADEGPAREEQRPIQPSFTKSLCRESHW 63

Query: 82 KIKSLKVYLF 91
          K   L + ++
Sbjct: 64 KCLLLSLLMY 73


>gi|118722349 RNA binding motif protein 12B [Homo sapiens]
          Length = 1001

 Score = 30.4 bits (67), Expect = 0.76
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 11/100 (11%)

Query: 55  LSKAASESPP----DKEWC--SITKSPCQVKDMKIKSLKVYL--FSLSIKEFEVTDFLLG 106
           L ++   SPP    D+ +   S +KSP + +        V+L   SLSI E ++ +F  G
Sbjct: 247 LRRSEEHSPPRGINDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSIDERDLRNFFRG 306

Query: 107 VPLKDKVLKLMFVQKQPKAGRRIRFKVIVTIRDCNDNVSL 146
             L D+ ++ ++   + +   R  F +  T++D N  +SL
Sbjct: 307 TDLTDEQIRFLY---KDENRTRYAFVMFKTLKDYNTALSL 343


>gi|21361458 Rho guanine nucleotide exchange factor (GEF) 17 [Homo
           sapiens]
          Length = 2063

 Score = 30.0 bits (66), Expect = 0.99
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 25/78 (32%)

Query: 21  RGQPSTRIFSEKNGPGA-------------------------RSGEAAAGFQGQGLAPAL 55
           RGQPS R+    +GP A                         R  + +AG +  G+ PA 
Sbjct: 51  RGQPSRRVSKLASGPLAAPAQPRPLRSLSPSVRQLSRRFDAPRLDDGSAGTRDGGVLPAA 110

Query: 56  SKAASESPPDKEWCSITK 73
           ++ A+E P    W S+T+
Sbjct: 111 AEEAAEGPARGAWPSVTE 128


>gi|239757331 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 231

 Score = 29.3 bits (64), Expect = 1.7
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 19  RRRGQPSTRIFSEKNGPGARSGEAAAGFQGQGLAPALSKAASESPP 64
           RRR +  +R FS  +GP   SG ++ G    G A   S+ ++ SPP
Sbjct: 60  RRRSRSRSRPFS--SGPSGPSGPSSPGGPSSGGASPASEGSAMSPP 103


>gi|239757070 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 195

 Score = 29.3 bits (64), Expect = 1.7
 Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 4  GSGAEHHFLAQTFMGRRRGQPSTRIFSEKNGPGARSGEAAAGFQG-QGLAPA 54
          G+    H + Q   G   G    +  S   GPGARSG A A  QG QG A A
Sbjct: 25 GADERRHHVQQQHEGHEEGGSQQQHRSA--GPGARSGRAGAAGQGAQGWAAA 74


>gi|239751841 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 231

 Score = 29.3 bits (64), Expect = 1.7
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 19  RRRGQPSTRIFSEKNGPGARSGEAAAGFQGQGLAPALSKAASESPP 64
           RRR +  +R FS  +GP   SG ++ G    G A   S+ ++ SPP
Sbjct: 60  RRRSRSRSRPFS--SGPSGPSGPSSPGGPSSGGASPASEGSAMSPP 103


>gi|239751580 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 195

 Score = 29.3 bits (64), Expect = 1.7
 Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 4  GSGAEHHFLAQTFMGRRRGQPSTRIFSEKNGPGARSGEAAAGFQG-QGLAPA 54
          G+    H + Q   G   G    +  S   GPGARSG A A  QG QG A A
Sbjct: 25 GADERRHHVQQQHEGHEEGGSQQQHRSA--GPGARSGRAGAAGQGAQGWAAA 74


>gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo
           sapiens]
          Length = 231

 Score = 29.3 bits (64), Expect = 1.7
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 19  RRRGQPSTRIFSEKNGPGARSGEAAAGFQGQGLAPALSKAASESPP 64
           RRR +  +R FS  +GP   SG ++ G    G A   S+ ++ SPP
Sbjct: 60  RRRSRSRSRPFS--SGPSGPSGPSSPGGPSSGGASPASEGSAMSPP 103


>gi|239746092 PREDICTED: hypothetical protein XP_002343656 [Homo
          sapiens]
          Length = 195

 Score = 29.3 bits (64), Expect = 1.7
 Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 4  GSGAEHHFLAQTFMGRRRGQPSTRIFSEKNGPGARSGEAAAGFQG-QGLAPA 54
          G+    H + Q   G   G    +  S   GPGARSG A A  QG QG A A
Sbjct: 25 GADERRHHVQQQHEGHEEGGSQQQHRSA--GPGARSGRAGAAGQGAQGWAAA 74


>gi|84626580 hypothetical protein LOC80178 [Homo sapiens]
          Length = 433

 Score = 28.9 bits (63), Expect = 2.2
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 21  RGQPSTRIFSEKNGP----GARSGEAAAGFQGQGLAPALSKAASESPPDKEWCSITKSPC 76
           +G P  R+ S  +G     GAR+    AG + Q +AP+ +  A E+   KE   + + P 
Sbjct: 150 KGHPERRLLSVGDGTRVGMGARTPRPGAGLRDQQMAPSAAPQAPEAFTLKEKGHLLRLPA 209

Query: 77  QVKDMKIKSLKVYLFSLSIKEFEVTD 102
             +    ++  ++    S +  + TD
Sbjct: 210 AFRKAASQNSSLWAQLSSTQTSDSTD 235


>gi|169167062 PREDICTED: hypothetical protein LOC285556 [Homo sapiens]
          Length = 1826

 Score = 28.5 bits (62), Expect = 2.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 34   GPGARSGEAAAGFQGQGLAPALSKAASESPPDK 66
            GP   S  AA G + QGL       A+ +PPD+
Sbjct: 1451 GPSPESPSAAKGIKSQGLRSLKISPATRAPPDE 1483


>gi|113416182 PREDICTED: hypothetical protein LOC285556 [Homo sapiens]
          Length = 1826

 Score = 28.5 bits (62), Expect = 2.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 34   GPGARSGEAAAGFQGQGLAPALSKAASESPPDK 66
            GP   S  AA G + QGL       A+ +PPD+
Sbjct: 1451 GPSPESPSAAKGIKSQGLRSLKISPATRAPPDE 1483


>gi|113415686 PREDICTED: hypothetical protein LOC285556 [Homo sapiens]
          Length = 1826

 Score = 28.5 bits (62), Expect = 2.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 34   GPGARSGEAAAGFQGQGLAPALSKAASESPPDK 66
            GP   S  AA G + QGL       A+ +PPD+
Sbjct: 1451 GPSPESPSAAKGIKSQGLRSLKISPATRAPPDE 1483


>gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precursor
           [Homo sapiens]
          Length = 932

 Score = 28.5 bits (62), Expect = 2.9
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 10/56 (17%)

Query: 117 MFVQKQPKAGRRIRFKVIVTIRDCNDNV----------SLGVEWPKELLIAVCRTN 162
           M VQ    AG   R KV++T+ D NDN           S+    P+  LIA+   N
Sbjct: 317 MEVQAMDNAGYSARAKVLITVLDVNDNAPEVVLTSLASSVPENSPRGTLIALLNVN 372


>gi|14196457 protocadherin gamma subfamily A, 12 isoform 2 precursor
           [Homo sapiens]
          Length = 820

 Score = 28.5 bits (62), Expect = 2.9
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 10/56 (17%)

Query: 117 MFVQKQPKAGRRIRFKVIVTIRDCNDNV----------SLGVEWPKELLIAVCRTN 162
           M VQ    AG   R KV++T+ D NDN           S+    P+  LIA+   N
Sbjct: 317 MEVQAMDNAGYSARAKVLITVLDVNDNAPEVVLTSLASSVPENSPRGTLIALLNVN 372


>gi|14196468 protocadherin gamma subfamily A, 4 isoform 2 precursor
           [Homo sapiens]
          Length = 820

 Score = 28.5 bits (62), Expect = 2.9
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 82  KIKSLKVYLFSLSIKEFEVTDFLLGVPLKDKVLKLMFVQKQPKAGRRIRFKVIVTIRDCN 141
           K++     LF L+    ++T  L G+  +D     + V+     G R R KV+VT+ D N
Sbjct: 283 KVRDKISQLFQLNSLSGDIT-ILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDEN 341

Query: 142 DN 143
           DN
Sbjct: 342 DN 343


>gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precursor
           [Homo sapiens]
          Length = 931

 Score = 28.5 bits (62), Expect = 2.9
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 82  KIKSLKVYLFSLSIKEFEVTDFLLGVPLKDKVLKLMFVQKQPKAGRRIRFKVIVTIRDCN 141
           K++     LF L+    ++T  L G+  +D     + V+     G R R KV+VT+ D N
Sbjct: 283 KVRDKISQLFQLNSLSGDIT-ILGGLDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDEN 341

Query: 142 DN 143
           DN
Sbjct: 342 DN 343


>gi|28195386 sex-determining region Y-box 2 [Homo sapiens]
          Length = 317

 Score = 28.1 bits (61), Expect = 3.8
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 14/86 (16%)

Query: 13  AQTFMGRRRGQPSTRI-FSEKNGPGARSGEAAAGFQGQGLAPALSKAASESPPDKEWCSI 71
           +QT+M    G P+  + +S++  PG   G          +   +   AS SPP     S 
Sbjct: 213 SQTYMN---GSPTYSMSYSQQGTPGMALGS---------MGSVVKSEASSSPPVVTSSSH 260

Query: 72  TKSPCQVKDMKIKSLKVYLFSLSIKE 97
           +++PCQ  D++   + +YL    + E
Sbjct: 261 SRAPCQAGDLR-DMISMYLPGAEVPE 285


>gi|134304840 KIAA0319 [Homo sapiens]
          Length = 1072

 Score = 27.7 bits (60), Expect = 4.9
 Identities = 17/56 (30%), Positives = 27/56 (48%)

Query: 53  PALSKAASESPPDKEWCSITKSPCQVKDMKIKSLKVYLFSLSIKEFEVTDFLLGVP 108
           P  S A SES P +   S T +P  VK++ + +    + +L   E E+  F+   P
Sbjct: 307 PPTSAAPSESTPSELPISPTTAPRTVKELTVSAGDNLIITLPDNEVELKAFVAPAP 362


>gi|14141152 heterogeneous nuclear ribonucleoprotein M isoform a
          [Homo sapiens]
          Length = 730

 Score = 27.7 bits (60), Expect = 4.9
 Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 14/70 (20%)

Query: 31 EKNGPGARSGEAAAGFQGQGLAPALSKAASE--------------SPPDKEWCSITKSPC 76
          E   PG  SG  A G +G+G  PA ++   E              +P  +    IT  P 
Sbjct: 21 ESGAPGVPSGNGAPGPKGEGERPAQNEKRKEKNIKRGGNRFEPYANPTKRYRAFITNIPF 80

Query: 77 QVKDMKIKSL 86
           VK   +K L
Sbjct: 81 DVKWQSLKDL 90


>gi|157412270 heterogeneous nuclear ribonucleoprotein M isoform b
          [Homo sapiens]
          Length = 691

 Score = 27.7 bits (60), Expect = 4.9
 Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 14/70 (20%)

Query: 31 EKNGPGARSGEAAAGFQGQGLAPALSKAASE--------------SPPDKEWCSITKSPC 76
          E   PG  SG  A G +G+G  PA ++   E              +P  +    IT  P 
Sbjct: 21 ESGAPGVPSGNGAPGPKGEGERPAQNEKRKEKNIKRGGNRFEPYANPTKRYRAFITNIPF 80

Query: 77 QVKDMKIKSL 86
           VK   +K L
Sbjct: 81 DVKWQSLKDL 90


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,524,632
Number of Sequences: 37866
Number of extensions: 293918
Number of successful extensions: 1049
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1025
Number of HSP's gapped (non-prelim): 39
length of query: 169
length of database: 18,247,518
effective HSP length: 95
effective length of query: 74
effective length of database: 14,650,248
effective search space: 1084118352
effective search space used: 1084118352
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.