BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239748439 PREDICTED: hypothetical protein XP_002346659 [Homo sapiens] (88 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239753880 PREDICTED: similar to heat shock factor binding pro... 174 2e-44 gi|239748439 PREDICTED: hypothetical protein XP_002346659 [Homo ... 174 2e-44 gi|239742375 PREDICTED: hypothetical protein XP_002342506 [Homo ... 174 2e-44 gi|4557647 heat shock factor binding protein 1 [Homo sapiens] 125 9e-30 gi|209969760 heat shock factor binding protein 1-like [Homo sapi... 46 5e-06 gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens] 31 0.18 gi|109659847 filamin A interacting protein 1-like isoform 3 [Hom... 30 0.31 gi|109659849 filamin A interacting protein 1-like isoform 2 [Hom... 30 0.31 gi|109659845 filamin A interacting protein 1-like isoform 1 [Hom... 30 0.31 gi|55770888 early endosome antigen 1, 162kD [Homo sapiens] 30 0.31 gi|21735548 centrosomal protein 2 [Homo sapiens] 29 0.91 gi|110347568 centrosomal protein 152kDa [Homo sapiens] 29 0.91 gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens] 28 1.2 gi|5901944 elastin microfibril interfacer 1 [Homo sapiens] 28 1.5 gi|9951927 adducin 3 (gamma) isoform b [Homo sapiens] 28 2.0 gi|62912453 adducin 3 (gamma) isoform b [Homo sapiens] 28 2.0 gi|9943848 adducin 3 (gamma) isoform a [Homo sapiens] 28 2.0 gi|215599324 coiled-coil domain containing 114 isoform 2 [Homo s... 27 2.6 gi|60498978 elastin microfibril interfacer 2 [Homo sapiens] 27 2.6 gi|163792198 latrophilin 3 precursor [Homo sapiens] 27 2.6 gi|33598968 LIM domain only 7 isoform 1 [Homo sapiens] 27 3.5 gi|113413200 PREDICTED: similar to protein expressed in prostate... 27 3.5 gi|119466532 laminin alpha 2 subunit isoform b precursor [Homo s... 27 3.5 gi|28559088 laminin alpha 2 subunit isoform a precursor [Homo sa... 27 3.5 gi|45446749 kinesin family member 5A [Homo sapiens] 27 3.5 gi|52426735 ankyrin 2 isoform 1 [Homo sapiens] 27 3.5 gi|221316634 LIM domain only 7 isoform 2 [Homo sapiens] 27 3.5 gi|90669228 deleted in lung and esophageal cancer 1 isoform DLEC... 27 4.5 gi|90669194 deleted in lung and esophageal cancer 1 isoform DLEC... 27 4.5 gi|239741769 PREDICTED: similar to protein expressed in prostate... 27 4.5 >gi|239753880 PREDICTED: similar to heat shock factor binding protein 1 [Homo sapiens] Length = 88 Score = 174 bits (440), Expect = 2e-44 Identities = 88/88 (100%), Positives = 88/88 (100%) Query: 1 MGTRDIAETDPKNEQELTSVVQKLLQQIQDKFQTMSDQIIGRTDDMSSCTDDLEKNIADL 60 MGTRDIAETDPKNEQELTSVVQKLLQQIQDKFQTMSDQIIGRTDDMSSCTDDLEKNIADL Sbjct: 1 MGTRDIAETDPKNEQELTSVVQKLLQQIQDKFQTMSDQIIGRTDDMSSCTDDLEKNIADL 60 Query: 61 MTQAGVEELESKNKIPATQEVKVANNLY 88 MTQAGVEELESKNKIPATQEVKVANNLY Sbjct: 61 MTQAGVEELESKNKIPATQEVKVANNLY 88 >gi|239748439 PREDICTED: hypothetical protein XP_002346659 [Homo sapiens] Length = 88 Score = 174 bits (440), Expect = 2e-44 Identities = 88/88 (100%), Positives = 88/88 (100%) Query: 1 MGTRDIAETDPKNEQELTSVVQKLLQQIQDKFQTMSDQIIGRTDDMSSCTDDLEKNIADL 60 MGTRDIAETDPKNEQELTSVVQKLLQQIQDKFQTMSDQIIGRTDDMSSCTDDLEKNIADL Sbjct: 1 MGTRDIAETDPKNEQELTSVVQKLLQQIQDKFQTMSDQIIGRTDDMSSCTDDLEKNIADL 60 Query: 61 MTQAGVEELESKNKIPATQEVKVANNLY 88 MTQAGVEELESKNKIPATQEVKVANNLY Sbjct: 61 MTQAGVEELESKNKIPATQEVKVANNLY 88 >gi|239742375 PREDICTED: hypothetical protein XP_002342506 [Homo sapiens] Length = 88 Score = 174 bits (440), Expect = 2e-44 Identities = 88/88 (100%), Positives = 88/88 (100%) Query: 1 MGTRDIAETDPKNEQELTSVVQKLLQQIQDKFQTMSDQIIGRTDDMSSCTDDLEKNIADL 60 MGTRDIAETDPKNEQELTSVVQKLLQQIQDKFQTMSDQIIGRTDDMSSCTDDLEKNIADL Sbjct: 1 MGTRDIAETDPKNEQELTSVVQKLLQQIQDKFQTMSDQIIGRTDDMSSCTDDLEKNIADL 60 Query: 61 MTQAGVEELESKNKIPATQEVKVANNLY 88 MTQAGVEELESKNKIPATQEVKVANNLY Sbjct: 61 MTQAGVEELESKNKIPATQEVKVANNLY 88 >gi|4557647 heat shock factor binding protein 1 [Homo sapiens] Length = 76 Score = 125 bits (313), Expect = 9e-30 Identities = 64/75 (85%), Positives = 69/75 (92%) Query: 6 IAETDPKNEQELTSVVQKLLQQIQDKFQTMSDQIIGRTDDMSSCTDDLEKNIADLMTQAG 65 +AETDPK Q+LTSVVQ LLQQ+QDKFQTMSDQIIGR DDMSS DDLEKNIADLMTQAG Sbjct: 1 MAETDPKTVQDLTSVVQTLLQQMQDKFQTMSDQIIGRIDDMSSRIDDLEKNIADLMTQAG 60 Query: 66 VEELESKNKIPATQE 80 VEELES+NKIPATQ+ Sbjct: 61 VEELESENKIPATQK 75 >gi|209969760 heat shock factor binding protein 1-like [Homo sapiens] Length = 74 Score = 46.2 bits (108), Expect = 5e-06 Identities = 20/63 (31%), Positives = 37/63 (58%) Query: 5 DIAETDPKNEQELTSVVQKLLQQIQDKFQTMSDQIIGRTDDMSSCTDDLEKNIADLMTQA 64 D+ + + L + L Q++Q+ FQ ++ + R ++M + +DL+KN+ DLM QA Sbjct: 2 DVRGPEAPGGRALRDAAENLFQELQEHFQALTATLNLRMEEMGNRIEDLQKNVKDLMVQA 61 Query: 65 GVE 67 G+E Sbjct: 62 GIE 64 >gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens] Length = 1976 Score = 31.2 bits (69), Expect = 0.18 Identities = 21/93 (22%), Positives = 49/93 (52%), Gaps = 13/93 (13%) Query: 4 RDIAETDPKNEQELTSVVQKLLQQI---QDKFQTMSDQIIGRTDDMSSCTDDLEKNIADL 60 RD AE + + ++ + + L++ +++F+ + Q+ +D+ S DD+ KN+ +L Sbjct: 1471 RDRAEAEAREKETKALSLARALEEALEAKEEFERQNKQLRADMEDLMSSKDDVGKNVHEL 1530 Query: 61 -----MTQAGVEEL-----ESKNKIPATQEVKV 83 + VEE+ E ++++ AT++ K+ Sbjct: 1531 EKSKRALEQQVEEMRTQLEELEDELQATEDAKL 1563 >gi|109659847 filamin A interacting protein 1-like isoform 3 [Homo sapiens] Length = 1133 Score = 30.4 bits (67), Expect = 0.31 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Query: 6 IAETDPKNEQELTSVVQKLLQQIQDKFQTMSDQIIGRTDDMSSCTDDLEKNIADLMTQAG 65 +AE + E++ + ++K LQ KF D I+ + + S L++ +A L Q Sbjct: 276 LAEARVQEEEQKATRLEKELQTQTTKFHQDQDTIMAKLTNEDSQNRQLQQKLAALSRQ-- 333 Query: 66 VEELESKNK 74 ++ELE N+ Sbjct: 334 IDELEETNR 342 >gi|109659849 filamin A interacting protein 1-like isoform 2 [Homo sapiens] Length = 893 Score = 30.4 bits (67), Expect = 0.31 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Query: 6 IAETDPKNEQELTSVVQKLLQQIQDKFQTMSDQIIGRTDDMSSCTDDLEKNIADLMTQAG 65 +AE + E++ + ++K LQ KF D I+ + + S L++ +A L Q Sbjct: 36 LAEARVQEEEQKATRLEKELQTQTTKFHQDQDTIMAKLTNEDSQNRQLQQKLAALSRQ-- 93 Query: 66 VEELESKNK 74 ++ELE N+ Sbjct: 94 IDELEETNR 102 >gi|109659845 filamin A interacting protein 1-like isoform 1 [Homo sapiens] Length = 1135 Score = 30.4 bits (67), Expect = 0.31 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Query: 6 IAETDPKNEQELTSVVQKLLQQIQDKFQTMSDQIIGRTDDMSSCTDDLEKNIADLMTQAG 65 +AE + E++ + ++K LQ KF D I+ + + S L++ +A L Q Sbjct: 276 LAEARVQEEEQKATRLEKELQTQTTKFHQDQDTIMAKLTNEDSQNRQLQQKLAALSRQ-- 333 Query: 66 VEELESKNK 74 ++ELE N+ Sbjct: 334 IDELEETNR 342 >gi|55770888 early endosome antigen 1, 162kD [Homo sapiens] Length = 1411 Score = 30.4 bits (67), Expect = 0.31 Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 5/75 (6%) Query: 14 EQELTSVVQKLLQQIQDKFQTMSDQIIGRTDDMSSCTDDLEKNIADLMTQAGVEELESKN 73 E+E SV+Q ++ Q+ F+ + GR ++ + DL K++ + ++ A + + ++N Sbjct: 1010 EKEKISVLQNNYEKSQETFKQLQSDFYGRESELLATRQDL-KSVEEKLSLAQEDLISNRN 1068 Query: 74 KI----PATQEVKVA 84 +I QE+K A Sbjct: 1069 QIGNQNKLIQELKTA 1083 >gi|21735548 centrosomal protein 2 [Homo sapiens] Length = 2442 Score = 28.9 bits (63), Expect = 0.91 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 14/81 (17%) Query: 14 EQELTSVVQKLLQQIQDKFQTMS----DQIIGRTDDMSSCTD---DLEKNIADLMTQAGV 66 EQE T ++Q LQ+ Q + + + D + ++ SS DL+K + DL +Q Sbjct: 962 EQETTGILQTQLQEAQRELKEAARQHRDDLAALQEESSSLLQDKMDLQKQVEDLKSQLVA 1021 Query: 67 E-------ELESKNKIPATQE 80 + E E + K+ TQE Sbjct: 1022 QDDSQRLVEQEVQEKLRETQE 1042 >gi|110347568 centrosomal protein 152kDa [Homo sapiens] Length = 1654 Score = 28.9 bits (63), Expect = 0.91 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 4/52 (7%) Query: 6 IAETDPKNEQELTSVVQKLLQQIQDKFQTMSDQII----GRTDDMSSCTDDL 53 + +T K +Q + +KL+QQ++ ++Q+ DQ I +T D S TD + Sbjct: 747 LRKTTEKEQQTQEKIKEKLIQQLEKEWQSKLDQTIKAMKKKTLDCGSQTDQV 798 >gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens] Length = 1960 Score = 28.5 bits (62), Expect = 1.2 Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 7/64 (10%) Query: 25 LQQIQDKFQTMSDQIIGRTDDMSSCTDDLEKNIADLMTQAGVEEL-----ESKNKIPATQ 79 L+++ +F+T + ++ DD+ +LEK+ L Q VEE+ E ++++ AT+ Sbjct: 1495 LERLNKQFRTEMEDLMSSKDDVGKSVHELEKSKRALEQQ--VEEMKTQLEELEDELQATE 1552 Query: 80 EVKV 83 + K+ Sbjct: 1553 DAKL 1556 >gi|5901944 elastin microfibril interfacer 1 [Homo sapiens] Length = 1016 Score = 28.1 bits (61), Expect = 1.5 Identities = 10/49 (20%), Positives = 28/49 (57%) Query: 12 KNEQELTSVVQKLLQQIQDKFQTMSDQIIGRTDDMSSCTDDLEKNIADL 60 + ++E ++KLL ++++ + ++ +GR C+ +L + +A+L Sbjct: 317 QEDRERLRAMEKLLASVEERQRHLAGLAVGRRPPQECCSPELGRRLAEL 365 >gi|9951927 adducin 3 (gamma) isoform b [Homo sapiens] Length = 674 Score = 27.7 bits (60), Expect = 2.0 Identities = 12/38 (31%), Positives = 19/38 (50%) Query: 39 IIGRTDDMSSCTDDLEKNIADLMTQAGVEELESKNKIP 76 ++ DDM D+L K ++ L T +E +E K P Sbjct: 596 VVNGKDDMHDVEDELAKRVSRLSTSTTIENIEITIKSP 633 >gi|62912453 adducin 3 (gamma) isoform b [Homo sapiens] Length = 674 Score = 27.7 bits (60), Expect = 2.0 Identities = 12/38 (31%), Positives = 19/38 (50%) Query: 39 IIGRTDDMSSCTDDLEKNIADLMTQAGVEELESKNKIP 76 ++ DDM D+L K ++ L T +E +E K P Sbjct: 596 VVNGKDDMHDVEDELAKRVSRLSTSTTIENIEITIKSP 633 >gi|9943848 adducin 3 (gamma) isoform a [Homo sapiens] Length = 706 Score = 27.7 bits (60), Expect = 2.0 Identities = 12/38 (31%), Positives = 19/38 (50%) Query: 39 IIGRTDDMSSCTDDLEKNIADLMTQAGVEELESKNKIP 76 ++ DDM D+L K ++ L T +E +E K P Sbjct: 628 VVNGKDDMHDVEDELAKRVSRLSTSTTIENIEITIKSP 665 >gi|215599324 coiled-coil domain containing 114 isoform 2 [Homo sapiens] Length = 670 Score = 27.3 bits (59), Expect = 2.6 Identities = 16/58 (27%), Positives = 29/58 (50%) Query: 7 AETDPKNEQELTSVVQKLLQQIQDKFQTMSDQIIGRTDDMSSCTDDLEKNIADLMTQA 64 A ++ L QK+LQQ DK + ++++ R D+ + L+ +I L T+A Sbjct: 328 ARASKDDQHLLQEQQQKVLQQRMDKVHSEAERLEARFQDVRGQLEKLKADIQLLFTKA 385 >gi|60498978 elastin microfibril interfacer 2 [Homo sapiens] Length = 1053 Score = 27.3 bits (59), Expect = 2.6 Identities = 10/44 (22%), Positives = 24/44 (54%), Gaps = 2/44 (4%) Query: 27 QIQDKFQTMSDQIIGRTDDMSSCTDDLEKNIADLMTQAGVEELE 70 Q+++++Q + Q+I D CT +++ ++ M + V +E Sbjct: 669 QLEERWQRLQSQVISELDACKECTQGVQREVS--MVEGRVSHME 710 >gi|163792198 latrophilin 3 precursor [Homo sapiens] Length = 1469 Score = 27.3 bits (59), Expect = 2.6 Identities = 13/63 (20%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Query: 24 LLQQIQDKFQTMSDQIIGRTDDMSSCTDDLEKNIADLMTQAGVEELESKNKIPATQEVKV 83 LL +++ ++D ++ +TD + TD+++ +A L T+ +E+L+ + +++ Sbjct: 669 LLHTVEESAFVLADNLL-KTDIVRENTDNIKLEVARLSTEGNLEDLKFPENMGHGSTIQL 727 Query: 84 ANN 86 + N Sbjct: 728 SAN 730 >gi|33598968 LIM domain only 7 isoform 1 [Homo sapiens] Length = 1349 Score = 26.9 bits (58), Expect = 3.5 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 5 DIAETDPKNEQELT-SVVQKLLQQIQDKFQTMSDQIIGRTDDMSSCTDDLEK 55 D++ D +N ++L +QK+ Q++++ Q D + D S T DL+K Sbjct: 373 DVSAEDVQNLRQLRYEEMQKIKSQLKEQDQKWQDDLAKWKDRRKSYTSDLQK 424 >gi|113413200 PREDICTED: similar to protein expressed in prostate, ovary, testis, and placenta 2 [Homo sapiens] Length = 1038 Score = 26.9 bits (58), Expect = 3.5 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 5/76 (6%) Query: 15 QELTSVVQKLLQQIQDKFQTMSDQIIGRTDDMSSC--TDDLEKNIADLMTQAGVEELESK 72 +ELT + K+L + +F TM+++ I R C D E+ +A + A LE Sbjct: 846 RELTDYLMKILTERGYRFTTMAEREIVRDIKEKLCYVALDFEQEMAMV---ASSSSLEKS 902 Query: 73 NKIPATQEVKVANNLY 88 ++P Q + ++N + Sbjct: 903 YELPDGQVITISNEWF 918 >gi|119466532 laminin alpha 2 subunit isoform b precursor [Homo sapiens] Length = 3118 Score = 26.9 bits (58), Expect = 3.5 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 3/60 (5%) Query: 5 DIAETDPKNEQELTSVVQKLLQQIQDKFQTMSDQIIGRTDDMSSCTDDLEKNIADLMTQA 64 DI + + E+ S++ ++ IQ K MS+++ + DD+S D + +A+ ++QA Sbjct: 1837 DILDEANRLADEINSIID-YVEDIQTKLPPMSEELNDKIDDLSQEIKD--RKLAEKVSQA 1893 >gi|28559088 laminin alpha 2 subunit isoform a precursor [Homo sapiens] Length = 3122 Score = 26.9 bits (58), Expect = 3.5 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 3/60 (5%) Query: 5 DIAETDPKNEQELTSVVQKLLQQIQDKFQTMSDQIIGRTDDMSSCTDDLEKNIADLMTQA 64 DI + + E+ S++ ++ IQ K MS+++ + DD+S D + +A+ ++QA Sbjct: 1837 DILDEANRLADEINSIID-YVEDIQTKLPPMSEELNDKIDDLSQEIKD--RKLAEKVSQA 1893 >gi|45446749 kinesin family member 5A [Homo sapiens] Length = 1032 Score = 26.9 bits (58), Expect = 3.5 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%) Query: 15 QELTSVVQKLLQQIQDKFQTMSDQIIG---RTDDMSSCTDDLEKNIADLMTQAGVEELES 71 +EL+S Q L+ Q + K +++++ + + + D L +A L Q V E+ Sbjct: 624 RELSSC-QLLISQHEAKIRSLTEYMQSVELKKRHLEESYDSLSDELAKLQAQETVHEVAL 682 Query: 72 KNKIPATQ---EVKVANNL 87 K+K P TQ EVK A L Sbjct: 683 KDKEPDTQDADEVKKALEL 701 >gi|52426735 ankyrin 2 isoform 1 [Homo sapiens] Length = 3957 Score = 26.9 bits (58), Expect = 3.5 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 5/69 (7%) Query: 8 ETDPKNEQELTSVVQKLLQQIQDKFQTMSDQIIGRTDDMSSCTDDLEKNIADLMTQAGVE 67 E PK++ + +Q++ QQ+ D ++ + + DM+S D +++ Sbjct: 3341 EAKPKSKLPVKVPLQRVEQQLSDLDTSVQKTVAPQGQDMASIAPDNRSK-----SESDAS 3395 Query: 68 ELESKNKIP 76 L+SK K P Sbjct: 3396 SLDSKTKCP 3404 >gi|221316634 LIM domain only 7 isoform 2 [Homo sapiens] Length = 1385 Score = 26.9 bits (58), Expect = 3.5 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 5 DIAETDPKNEQELT-SVVQKLLQQIQDKFQTMSDQIIGRTDDMSSCTDDLEK 55 D++ D +N ++L +QK+ Q++++ Q D + D S T DL+K Sbjct: 422 DVSAEDVQNLRQLRYEEMQKIKSQLKEQDQKWQDDLAKWKDRRKSYTSDLQK 473 >gi|90669228 deleted in lung and esophageal cancer 1 isoform DLEC1-S3 [Homo sapiens] Length = 1778 Score = 26.6 bits (57), Expect = 4.5 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 7/61 (11%) Query: 21 VQKLLQQIQDKFQTMSDQIIGRTDDMSSCTDDLEKNIADLMTQAGVEELESKNKIPATQE 80 +++L +Q D+F+ + I T + + E+ +M+QAGV++LES ++P + Sbjct: 138 IRELYKQRLDEFEMLERHI---TQAQARAIAENER----VMSQAGVQDLESLVRLPPVKS 190 Query: 81 V 81 V Sbjct: 191 V 191 >gi|90669194 deleted in lung and esophageal cancer 1 isoform DLEC1-N1 [Homo sapiens] Length = 1755 Score = 26.6 bits (57), Expect = 4.5 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 7/61 (11%) Query: 21 VQKLLQQIQDKFQTMSDQIIGRTDDMSSCTDDLEKNIADLMTQAGVEELESKNKIPATQE 80 +++L +Q D+F+ + I T + + E+ +M+QAGV++LES ++P + Sbjct: 138 IRELYKQRLDEFEMLERHI---TQAQARAIAENER----VMSQAGVQDLESLVRLPPVKS 190 Query: 81 V 81 V Sbjct: 191 V 191 >gi|239741769 PREDICTED: similar to protein expressed in prostate, ovary, testis, and placenta 2 [Homo sapiens] Length = 952 Score = 26.6 bits (57), Expect = 4.5 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 1/74 (1%) Query: 15 QELTSVVQKLLQQIQDKFQTMSDQIIGRTDDMSSCTDDLEKNIADLMTQAGVEELESKNK 74 +ELT + K+L + +F TM+++ I R C L+ ++ A LE + Sbjct: 760 RELTDYLMKILTERGYRFTTMAEREIVRDIKEKLCYVALDFE-QEMAMAASSSSLEKSYE 818 Query: 75 IPATQEVKVANNLY 88 +P Q + + N + Sbjct: 819 LPDGQVITIGNEWF 832 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.308 0.124 0.323 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,687,380 Number of Sequences: 37866 Number of extensions: 87639 Number of successful extensions: 422 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 37 Number of HSP's that attempted gapping in prelim test: 378 Number of HSP's gapped (non-prelim): 80 length of query: 88 length of database: 18,247,518 effective HSP length: 60 effective length of query: 28 effective length of database: 15,975,558 effective search space: 447315624 effective search space used: 447315624 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.