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Search of human proteins with 239748266
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748266 PREDICTED: hypothetical protein [Homo sapiens]
(254 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753710 PREDICTED: hypothetical protein [Homo sapiens] 542 e-154
gi|239748266 PREDICTED: hypothetical protein [Homo sapiens] 542 e-154
gi|239742167 PREDICTED: hypothetical protein [Homo sapiens] 542 e-154
gi|84570137 homeobox B3 [Homo sapiens] 35 0.082
gi|40806175 diacylglycerol kinase, theta [Homo sapiens] 34 0.11
gi|61744445 ficolin 2 isoform a precursor [Homo sapiens] 33 0.18
gi|157909822 pragmin [Homo sapiens] 33 0.24
gi|24497501 forkhead box A1 [Homo sapiens] 32 0.41
gi|56121815 ADAM metallopeptidase with thrombospondin type 1 mot... 32 0.53
gi|169171485 PREDICTED: hypothetical protein [Homo sapiens] 32 0.70
gi|239756047 PREDICTED: heparan sulfate 6-O-sulfotransferase 3 [... 31 1.2
gi|45580707 heparan sulfate 6-O-sulfotransferase 3 [Homo sapiens] 31 1.2
gi|28610147 interleukin 6 signal transducer isoform 1 precursor ... 30 1.6
gi|42822876 hypothetical protein LOC286343 [Homo sapiens] 30 1.6
gi|239756433 PREDICTED: hypothetical protein [Homo sapiens] 30 2.0
gi|169171388 PREDICTED: hypothetical protein [Homo sapiens] 30 2.0
gi|239750970 PREDICTED: hypothetical protein XP_002347634 [Homo ... 30 2.0
gi|239749096 PREDICTED: hypothetical protein [Homo sapiens] 30 2.0
gi|239747677 PREDICTED: hypothetical protein [Homo sapiens] 30 2.0
gi|239745376 PREDICTED: hypothetical protein XP_002343484 [Homo ... 30 2.0
gi|239743123 PREDICTED: hypothetical protein [Homo sapiens] 30 2.0
gi|239741546 PREDICTED: hypothetical protein XP_002342233 [Homo ... 30 2.0
gi|47551356 hypothetical protein LOC408029 [Homo sapiens] 30 2.0
gi|47524184 hypothetical protein LOC29798 [Homo sapiens] 30 2.0
gi|32483397 dopamine receptor D4 [Homo sapiens] 30 2.7
gi|239751736 PREDICTED: hypothetical protein [Homo sapiens] 30 2.7
gi|239746237 PREDICTED: hypothetical protein XP_002343710 [Homo ... 30 2.7
gi|38488767 microtubule associated serine/threonine kinase famil... 30 2.7
gi|31982931 SLC2A4 regulator [Homo sapiens] 30 2.7
gi|112420992 crumbs homolog 2 [Homo sapiens] 30 2.7
>gi|239753710 PREDICTED: hypothetical protein [Homo sapiens]
Length = 254
Score = 542 bits (1396), Expect = e-154
Identities = 254/254 (100%), Positives = 254/254 (100%)
Query: 1 MAVAQAKRKRIYSCVPHGMEEKLPALLGIFGVKMLWEAASAFTYPMLMCALTPSTKMTKV 60
MAVAQAKRKRIYSCVPHGMEEKLPALLGIFGVKMLWEAASAFTYPMLMCALTPSTKMTKV
Sbjct: 1 MAVAQAKRKRIYSCVPHGMEEKLPALLGIFGVKMLWEAASAFTYPMLMCALTPSTKMTKV 60
Query: 61 NALDCWRRCACCCAGLPAAPAPVPSCRDAGDECERTCWAPPASRGPGWPPDESVLDWREC 120
NALDCWRRCACCCAGLPAAPAPVPSCRDAGDECERTCWAPPASRGPGWPPDESVLDWREC
Sbjct: 61 NALDCWRRCACCCAGLPAAPAPVPSCRDAGDECERTCWAPPASRGPGWPPDESVLDWREC 120
Query: 121 EPESGSLKKDSGRIFFRHELGFGFMTELKRASRSVSRSCVTWITCCPGGGSGGGAEAGFI 180
EPESGSLKKDSGRIFFRHELGFGFMTELKRASRSVSRSCVTWITCCPGGGSGGGAEAGFI
Sbjct: 121 EPESGSLKKDSGRIFFRHELGFGFMTELKRASRSVSRSCVTWITCCPGGGSGGGAEAGFI 180
Query: 181 FCKKKDRQPPERSSARANSTTSRLRKPEEPGALEWCRMSARAPAGTTWAGSEAEPERAAA 240
FCKKKDRQPPERSSARANSTTSRLRKPEEPGALEWCRMSARAPAGTTWAGSEAEPERAAA
Sbjct: 181 FCKKKDRQPPERSSARANSTTSRLRKPEEPGALEWCRMSARAPAGTTWAGSEAEPERAAA 240
Query: 241 AVPPELAVGPGSLG 254
AVPPELAVGPGSLG
Sbjct: 241 AVPPELAVGPGSLG 254
>gi|239748266 PREDICTED: hypothetical protein [Homo sapiens]
Length = 254
Score = 542 bits (1396), Expect = e-154
Identities = 254/254 (100%), Positives = 254/254 (100%)
Query: 1 MAVAQAKRKRIYSCVPHGMEEKLPALLGIFGVKMLWEAASAFTYPMLMCALTPSTKMTKV 60
MAVAQAKRKRIYSCVPHGMEEKLPALLGIFGVKMLWEAASAFTYPMLMCALTPSTKMTKV
Sbjct: 1 MAVAQAKRKRIYSCVPHGMEEKLPALLGIFGVKMLWEAASAFTYPMLMCALTPSTKMTKV 60
Query: 61 NALDCWRRCACCCAGLPAAPAPVPSCRDAGDECERTCWAPPASRGPGWPPDESVLDWREC 120
NALDCWRRCACCCAGLPAAPAPVPSCRDAGDECERTCWAPPASRGPGWPPDESVLDWREC
Sbjct: 61 NALDCWRRCACCCAGLPAAPAPVPSCRDAGDECERTCWAPPASRGPGWPPDESVLDWREC 120
Query: 121 EPESGSLKKDSGRIFFRHELGFGFMTELKRASRSVSRSCVTWITCCPGGGSGGGAEAGFI 180
EPESGSLKKDSGRIFFRHELGFGFMTELKRASRSVSRSCVTWITCCPGGGSGGGAEAGFI
Sbjct: 121 EPESGSLKKDSGRIFFRHELGFGFMTELKRASRSVSRSCVTWITCCPGGGSGGGAEAGFI 180
Query: 181 FCKKKDRQPPERSSARANSTTSRLRKPEEPGALEWCRMSARAPAGTTWAGSEAEPERAAA 240
FCKKKDRQPPERSSARANSTTSRLRKPEEPGALEWCRMSARAPAGTTWAGSEAEPERAAA
Sbjct: 181 FCKKKDRQPPERSSARANSTTSRLRKPEEPGALEWCRMSARAPAGTTWAGSEAEPERAAA 240
Query: 241 AVPPELAVGPGSLG 254
AVPPELAVGPGSLG
Sbjct: 241 AVPPELAVGPGSLG 254
>gi|239742167 PREDICTED: hypothetical protein [Homo sapiens]
Length = 254
Score = 542 bits (1396), Expect = e-154
Identities = 254/254 (100%), Positives = 254/254 (100%)
Query: 1 MAVAQAKRKRIYSCVPHGMEEKLPALLGIFGVKMLWEAASAFTYPMLMCALTPSTKMTKV 60
MAVAQAKRKRIYSCVPHGMEEKLPALLGIFGVKMLWEAASAFTYPMLMCALTPSTKMTKV
Sbjct: 1 MAVAQAKRKRIYSCVPHGMEEKLPALLGIFGVKMLWEAASAFTYPMLMCALTPSTKMTKV 60
Query: 61 NALDCWRRCACCCAGLPAAPAPVPSCRDAGDECERTCWAPPASRGPGWPPDESVLDWREC 120
NALDCWRRCACCCAGLPAAPAPVPSCRDAGDECERTCWAPPASRGPGWPPDESVLDWREC
Sbjct: 61 NALDCWRRCACCCAGLPAAPAPVPSCRDAGDECERTCWAPPASRGPGWPPDESVLDWREC 120
Query: 121 EPESGSLKKDSGRIFFRHELGFGFMTELKRASRSVSRSCVTWITCCPGGGSGGGAEAGFI 180
EPESGSLKKDSGRIFFRHELGFGFMTELKRASRSVSRSCVTWITCCPGGGSGGGAEAGFI
Sbjct: 121 EPESGSLKKDSGRIFFRHELGFGFMTELKRASRSVSRSCVTWITCCPGGGSGGGAEAGFI 180
Query: 181 FCKKKDRQPPERSSARANSTTSRLRKPEEPGALEWCRMSARAPAGTTWAGSEAEPERAAA 240
FCKKKDRQPPERSSARANSTTSRLRKPEEPGALEWCRMSARAPAGTTWAGSEAEPERAAA
Sbjct: 181 FCKKKDRQPPERSSARANSTTSRLRKPEEPGALEWCRMSARAPAGTTWAGSEAEPERAAA 240
Query: 241 AVPPELAVGPGSLG 254
AVPPELAVGPGSLG
Sbjct: 241 AVPPELAVGPGSLG 254
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 34.7 bits (78), Expect = 0.082
Identities = 34/122 (27%), Positives = 48/122 (39%), Gaps = 11/122 (9%)
Query: 66 WRRCACCCAGLPAAPAPVPSCRDAGDECERTCWAP-PASRGPGWPPDESVLDWRECEPES 124
++R AC L A AP ++ C R AP P S PG PP + +
Sbjct: 47 YQRSACSLQSLGNA-APHAKSKELNGSCMRPGLAPEPLSAPPGSPPPSAAPTSATSNSSN 105
Query: 125 GSLKKDSG--------RIFFRHELGFGFMTELKRASRSVSRSCVTWITCCPGGGSGGGAE 176
G SG ++ F +M E ++ S+ + S T C GGG GGG
Sbjct: 106 GGGPSKSGPPKCGPGTNSTLTKQI-FPWMKESRQTSKLKNNSPGTAEGCGGGGGGGGGGG 164
Query: 177 AG 178
+G
Sbjct: 165 SG 166
>gi|40806175 diacylglycerol kinase, theta [Homo sapiens]
Length = 942
Score = 34.3 bits (77), Expect = 0.11
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 207 PEEPGALEWCRMSARAPAGTTWAGSEAEPERAAAAVPPELAVGPGS 252
PE+PG LE CR+ + A WAG +A +AV E PGS
Sbjct: 339 PEDPGHLELCRLPPSSQACDAWAGG-----KAGSAVISEEGRSPGS 379
>gi|61744445 ficolin 2 isoform a precursor [Homo sapiens]
Length = 313
Score = 33.5 bits (75), Expect = 0.18
Identities = 28/85 (32%), Positives = 32/85 (37%), Gaps = 13/85 (15%)
Query: 26 LLGIFGVKMLWEAASAFTYPML-MCALTPSTKMTKVNALDCWRRCACCCAGLPAAPAPVP 84
LL G M W +A T P + M L S K+T + C GLP AP P
Sbjct: 16 LLSFLG--MAWALQAADTCPEVKMVGLEGSDKLTILRG----------CPGLPGAPGPKG 63
Query: 85 SCRDAGDECERTCWAPPASRGPGWP 109
G ER PP GP P
Sbjct: 64 EAGTNGKRGERGPPGPPGKAGPPGP 88
>gi|157909822 pragmin [Homo sapiens]
Length = 1402
Score = 33.1 bits (74), Expect = 0.24
Identities = 50/202 (24%), Positives = 67/202 (33%), Gaps = 55/202 (27%)
Query: 72 CCAGLPAAPAPVPSC----RDAGDECERTCW--------APPASRGPGWPPDESVLDWRE 119
CC G P A A + R G +C TCW A RGP + P E
Sbjct: 259 CCPGSPVAKAASQTAGSRGRHGGRDCSPTCWEQGKCSGPAEQEKRGPSF-PKECCSQGPT 317
Query: 120 CEPESGSLKKDSGRIFFRHELGFGFMTELKRASRSVSRSCVTWITCCPGGGSGGGAEAGF 179
P KK S + A S SC G GSG GA + F
Sbjct: 318 AHPSCLGPKKLS--------------LTSEAAISSDGLSC--------GSGSGSGASSPF 355
Query: 180 I------FC---------KKKDRQPPERSSARANSTTSRLRKPEEPGALE-----WCRMS 219
+ +C K++D P + +R T + P P + +
Sbjct: 356 VPHLESDYCSLMKEPAPEKQQDPGCPGVTPSRCLGLTGEPQPPAHPREATQPEPIYAEST 415
Query: 220 ARAPAGTTWAGSEAEPERAAAA 241
R A + S+A+ E AAAA
Sbjct: 416 KRKKAAPVPSKSQAKIEHAAAA 437
>gi|24497501 forkhead box A1 [Homo sapiens]
Length = 472
Score = 32.3 bits (72), Expect = 0.41
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 9/96 (9%)
Query: 167 PGGGSGGGAEAGFIFCKKKDRQPPERSSARANSTTSRLRKPE--EPGALEWCRMSARAPA 224
PG G GGG+ +G K + S A S S L + + G LE A +
Sbjct: 272 PGAGGGGGSGSGGSGAKGGPESRKDPSGASNPSADSPLHRGVHGKTGQLEGAPAPGPAAS 331
Query: 225 -------GTTWAGSEAEPERAAAAVPPELAVGPGSL 253
G T G +E + A++ P ++ GPG+L
Sbjct: 332 PQTLDHSGATATGGASELKTPASSTAPPISSGPGAL 367
>gi|56121815 ADAM metallopeptidase with thrombospondin type 1 motif,
10 preproprotein [Homo sapiens]
Length = 1103
Score = 32.0 bits (71), Expect = 0.53
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 102 ASRGPGWPPDESVLDWRECEPESG 125
A GP PP+ + LDW EC P G
Sbjct: 938 ACHGPTCPPEWAALDWSECTPSCG 961
>gi|169171485 PREDICTED: hypothetical protein [Homo sapiens]
Length = 349
Score = 31.6 bits (70), Expect = 0.70
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 211 GALEWCRMSARAPAGTTWAGSEAEPERAAAAVPPELAVGPGSLG 254
G+ W R+ R P+G W G E P+ AA P L+ G
Sbjct: 154 GSRRWARLGFRVPSGVGWGGPE-RPKALKAAWPAPLSTAKAPAG 196
>gi|239756047 PREDICTED: heparan sulfate 6-O-sulfotransferase 3
[Homo sapiens]
Length = 471
Score = 30.8 bits (68), Expect = 1.2
Identities = 28/84 (33%), Positives = 32/84 (38%), Gaps = 21/84 (25%)
Query: 74 AGLPAAPAPVPSCRDAGDECERTCWAPPASRGPGWPP---------DESVLDWRECE--- 121
AG PA P P + +E ER PP RGP P DE D RE E
Sbjct: 46 AGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEPGDPREGEEEE 105
Query: 122 ---------PESGSLKKDSGRIFF 136
PE+GSL + R F
Sbjct: 106 EEDEPDPEAPENGSLPRFVPRFNF 129
>gi|45580707 heparan sulfate 6-O-sulfotransferase 3 [Homo sapiens]
Length = 471
Score = 30.8 bits (68), Expect = 1.2
Identities = 28/84 (33%), Positives = 32/84 (38%), Gaps = 21/84 (25%)
Query: 74 AGLPAAPAPVPSCRDAGDECERTCWAPPASRGPGWPP---------DESVLDWRECE--- 121
AG PA P P + +E ER PP RGP P DE D RE E
Sbjct: 46 AGPPAVPGPARRAQAPPEEWERRPQLPPPPRGPPEGPRGAAAPEEEDEEPGDPREGEEEE 105
Query: 122 ---------PESGSLKKDSGRIFF 136
PE+GSL + R F
Sbjct: 106 EEDEPDPEAPENGSLPRFVPRFNF 129
>gi|28610147 interleukin 6 signal transducer isoform 1 precursor
[Homo sapiens]
Length = 918
Score = 30.4 bits (67), Expect = 1.6
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 12/52 (23%)
Query: 213 LEWCRMSARAPAGTTW------------AGSEAEPERAAAAVPPELAVGPGS 252
LEWC +S +AP T W G+ AE + V P A GPGS
Sbjct: 455 LEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGS 506
>gi|42822876 hypothetical protein LOC286343 [Homo sapiens]
Length = 228
Score = 30.4 bits (67), Expect = 1.6
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 168 GGGSGGGAEAGFIFCKKKDRQPPERSSARANSTTSRLRKPEEPGALE 214
GGG GGG + +C PP SS+ ++S TS + ALE
Sbjct: 49 GGGGGGGCSSSSSYCS----FPPSLSSSSSSSPTSGSPRGSHSSALE 91
>gi|239756433 PREDICTED: hypothetical protein [Homo sapiens]
Length = 513
Score = 30.0 bits (66), Expect = 2.0
Identities = 20/78 (25%), Positives = 30/78 (38%)
Query: 166 CPGGGSGGGAEAGFIFCKKKDRQPPERSSARANSTTSRLRKPEEPGALEWCRMSARAPAG 225
CP G A +++ R+PP ++ R +R PGAL AR P
Sbjct: 259 CPLGAQPHAAGVVATGLRRRHRRPPAAAARRPLLAAARRGALPAPGALIGPAPRARRPLA 318
Query: 226 TTWAGSEAEPERAAAAVP 243
T+A P ++ P
Sbjct: 319 CTFANPPPPPAGCGSSAP 336
>gi|169171388 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 30.0 bits (66), Expect = 2.0
Identities = 24/69 (34%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 168 GGGSGGGAEAGFIFCKKKDRQPPERSSARANSTTSRLRKPE-EPGALEWCRMSARAPAGT 226
GGG GGAE G R A + R R P+ EP E+ A A A
Sbjct: 54 GGGGAGGAEGG------AGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADA 107
Query: 227 TWAGSEAEP 235
AG AEP
Sbjct: 108 LTAGKSAEP 116
>gi|239750970 PREDICTED: hypothetical protein XP_002347634 [Homo
sapiens]
Length = 513
Score = 30.0 bits (66), Expect = 2.0
Identities = 20/78 (25%), Positives = 30/78 (38%)
Query: 166 CPGGGSGGGAEAGFIFCKKKDRQPPERSSARANSTTSRLRKPEEPGALEWCRMSARAPAG 225
CP G A +++ R+PP ++ R +R PGAL AR P
Sbjct: 259 CPLGAQPHAAGVVATGLRRRHRRPPAAAARRPLLAAARRGALPAPGALIGPAPRARRPLA 318
Query: 226 TTWAGSEAEPERAAAAVP 243
T+A P ++ P
Sbjct: 319 CTFANPPPPPAGCGSSAP 336
>gi|239749096 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 30.0 bits (66), Expect = 2.0
Identities = 24/69 (34%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 168 GGGSGGGAEAGFIFCKKKDRQPPERSSARANSTTSRLRKPE-EPGALEWCRMSARAPAGT 226
GGG GGAE G R A + R R P+ EP E+ A A A
Sbjct: 54 GGGGAGGAEGG------AGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADA 107
Query: 227 TWAGSEAEP 235
AG AEP
Sbjct: 108 LTAGKSAEP 116
>gi|239747677 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 30.0 bits (66), Expect = 2.0
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 71 CCCAGLPAAPAPVPSCRDAGDECERTCWAPPASRGPG 107
C C+ +P APAP E + + P A+RGPG
Sbjct: 155 CHCSSVPGAPAPASQLPRPAGEVNKVKY-PSAARGPG 190
>gi|239745376 PREDICTED: hypothetical protein XP_002343484 [Homo
sapiens]
Length = 513
Score = 30.0 bits (66), Expect = 2.0
Identities = 20/78 (25%), Positives = 30/78 (38%)
Query: 166 CPGGGSGGGAEAGFIFCKKKDRQPPERSSARANSTTSRLRKPEEPGALEWCRMSARAPAG 225
CP G A +++ R+PP ++ R +R PGAL AR P
Sbjct: 259 CPLGAQPHAAGVVATGLRRRHRRPPAAAARRPLLAAARRGALPAPGALIGPAPRARRPLA 318
Query: 226 TTWAGSEAEPERAAAAVP 243
T+A P ++ P
Sbjct: 319 CTFANPPPPPAGCGSSAP 336
>gi|239743123 PREDICTED: hypothetical protein [Homo sapiens]
Length = 123
Score = 30.0 bits (66), Expect = 2.0
Identities = 24/69 (34%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 168 GGGSGGGAEAGFIFCKKKDRQPPERSSARANSTTSRLRKPE-EPGALEWCRMSARAPAGT 226
GGG GGAE G R A + R R P+ EP E+ A A A
Sbjct: 23 GGGGAGGAEGG------AGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADA 76
Query: 227 TWAGSEAEP 235
AG AEP
Sbjct: 77 LTAGKSAEP 85
>gi|239741546 PREDICTED: hypothetical protein XP_002342233 [Homo
sapiens]
Length = 262
Score = 30.0 bits (66), Expect = 2.0
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 71 CCCAGLPAAPAPVPSCRDAGDECERTCWAPPASRGPG 107
C C+ +P APAP E + + P A+RGPG
Sbjct: 155 CHCSSVPGAPAPASQLPRPAGEVNKVKY-PSAARGPG 190
>gi|47551356 hypothetical protein LOC408029 [Homo sapiens]
Length = 209
Score = 30.0 bits (66), Expect = 2.0
Identities = 39/163 (23%), Positives = 60/163 (36%), Gaps = 42/163 (25%)
Query: 81 APVPSCRDAGDECERTCWAPPASRGPGWPPDESVLD---WRECE-PESGSLKKDSGRI-- 134
AP PSCR G ++ P P P S L+ W E E E G S ++
Sbjct: 52 APEPSCRCPGTAQDQPSEELPDFMAPPVEPPASALELKVWLELEVAERGGQHSSSQQLPH 111
Query: 135 ---------FFRHELGFGFMTELK--RASRSVSRS----------CVTWITCCPGGGSGG 173
+R GF L R + + +S C P GG+G
Sbjct: 112 CSQSWAQWKLWRQRPGFAIWAPLPHWRGTSLIQQSSSPAAEGPAATAAGAVCLPAGGAG- 170
Query: 174 GAEAGFIFCKKKDRQPPERSSARANSTTSRLRKPEEPGALEWC 216
+++++P R S+R++ + R+P PG +E C
Sbjct: 171 ----------EQEKEPVSRGSSRSSCSQ---RRPPPPG-MEVC 199
>gi|47524184 hypothetical protein LOC29798 [Homo sapiens]
Length = 203
Score = 30.0 bits (66), Expect = 2.0
Identities = 39/163 (23%), Positives = 60/163 (36%), Gaps = 42/163 (25%)
Query: 81 APVPSCRDAGDECERTCWAPPASRGPGWPPDESVLD---WRECE-PESGSLKKDSGRI-- 134
AP PSCR G ++ P P P S L+ W E E E G S ++
Sbjct: 46 APEPSCRCPGTAQDQPSEELPDFMAPPVEPPASALELKVWLELEVAERGGQHSSSQQLPH 105
Query: 135 ---------FFRHELGFGFMTELK--RASRSVSRS----------CVTWITCCPGGGSGG 173
+R GF L R + + +S C P GG+G
Sbjct: 106 CSQSWAQWKLWRQRPGFAIWAPLPHWRGTSLIQQSSSPAAEGPAATAAGAVCLPAGGAG- 164
Query: 174 GAEAGFIFCKKKDRQPPERSSARANSTTSRLRKPEEPGALEWC 216
+++++P R S+R++ + R+P PG +E C
Sbjct: 165 ----------EQEKEPVSRGSSRSSCSQ---RRPPPPG-MEVC 193
>gi|32483397 dopamine receptor D4 [Homo sapiens]
Length = 419
Score = 29.6 bits (65), Expect = 2.7
Identities = 22/52 (42%), Positives = 22/52 (42%), Gaps = 10/52 (19%)
Query: 65 CWRRCACCCAGLPAAPAPVPSCRDAG-----DECERTCWAPPASRGPGWPPD 111
C CA GLP P P C A D C C APPA PG PPD
Sbjct: 258 CGPDCAPPAPGLPRGPCG-PDCAPAAPSLPQDPCGPDC-APPA---PGLPPD 304
>gi|239751736 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 29.6 bits (65), Expect = 2.7
Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 30/111 (27%)
Query: 167 PGGGS----GGGAEAGFIFCKKKDRQPPERSSARANSTTSRLRKPEEPGALE-----WCR 217
PGGGS G GA G + P ++R T+++RK G++ W
Sbjct: 29 PGGGSRARPGPGAGPGGEVLGRSSSTPASSKASR----TAQMRKATSSGSVPVLSVLWSS 84
Query: 218 MSA-------------RAPAGTTWAG----SEAEPERAAAAVPPELAVGPG 251
+S R G W G S++ AA++ PPE PG
Sbjct: 85 VSGSDGKAVRLNGAGPRPKRGGPWCGAKRPSQSAERSAASSTPPEKTCAPG 135
>gi|239746237 PREDICTED: hypothetical protein XP_002343710 [Homo
sapiens]
Length = 261
Score = 29.6 bits (65), Expect = 2.7
Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 30/111 (27%)
Query: 167 PGGGS----GGGAEAGFIFCKKKDRQPPERSSARANSTTSRLRKPEEPGALE-----WCR 217
PGGGS G GA G + P ++R T+++RK G++ W
Sbjct: 29 PGGGSRARPGPGAGPGGEVLGRSSSTPASSKASR----TAQMRKATSSGSVPVLSVLWSS 84
Query: 218 MSA-------------RAPAGTTWAG----SEAEPERAAAAVPPELAVGPG 251
+S R G W G S++ AA++ PPE PG
Sbjct: 85 VSGSDGKAVRLNGAGPRPKRGGPWCGAKRPSQSAERSAASSTPPEKTCAPG 135
>gi|38488767 microtubule associated serine/threonine kinase family
member 4 isoform b [Homo sapiens]
Length = 250
Score = 29.6 bits (65), Expect = 2.7
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 13/71 (18%)
Query: 190 PERSSARANSTTSRLRKPEEPGALE-----------WCRMSARAPAGTTWAGSEAEPERA 238
P SSA ++S + L + EPG + ARAPA WA + ER
Sbjct: 34 PGASSAESSSGSETLSEEGEPGGFSREHQPPPPPPLGGTLGARAPAA--WAPASVLLERG 91
Query: 239 AAAVPPELAVG 249
A+PP L G
Sbjct: 92 VLALPPPLPGG 102
>gi|31982931 SLC2A4 regulator [Homo sapiens]
Length = 387
Score = 29.6 bits (65), Expect = 2.7
Identities = 27/105 (25%), Positives = 35/105 (33%), Gaps = 6/105 (5%)
Query: 150 RASRSVSRSCVTWITCCPGGGSGGGAEAGFIFCKKKDRQPPERSSARANSTTSRLRKPEE 209
RA R+ + P G S GG AG F + ++ +P + T P
Sbjct: 24 RAEGPGPRAAPVTVPTPPQGSSVGGGFAGLEFARPQESEPRASDLGAPRTWTGAAAGPRT 83
Query: 210 PGALEWCRMSARAPAGTTWAGSEAEPERAAAAVPPELAVGPGSLG 254
P A PA G E AAA L+ P LG
Sbjct: 84 PSA------HIPVPAQRATPGKARLDEVMAAAALTSLSTSPLLLG 122
>gi|112420992 crumbs homolog 2 [Homo sapiens]
Length = 1285
Score = 29.6 bits (65), Expect = 2.7
Identities = 36/124 (29%), Positives = 42/124 (33%), Gaps = 19/124 (15%)
Query: 74 AGLPAAPAPVPSCRDAGDECERTCWAPPASR----------GPGW--PPDESVLDWRECE 121
A P PAP+ CR A C A R GPGW P E+ +D
Sbjct: 1042 ASWPGTPAPILGCRGAPVCAPSPCLHDGACRDLFDAFACACGPGWEGPRCEAHVDPCHSA 1101
Query: 122 P--ESGSLKKDSGRIFFRHELGFGFMTELKRASRSV-SRSCVTWITCCPGGGSGGGAEAG 178
P GR R GFG R V S+ C +TC G GG+ A
Sbjct: 1102 PCARGRCHTHPDGRFECRCPPGFGG----PRCRLPVPSKECSLNVTCLDGSPCEGGSPAA 1157
Query: 179 FIFC 182
C
Sbjct: 1158 NCSC 1161
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.133 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,706,619
Number of Sequences: 37866
Number of extensions: 696919
Number of successful extensions: 3282
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 3240
Number of HSP's gapped (non-prelim): 94
length of query: 254
length of database: 18,247,518
effective HSP length: 100
effective length of query: 154
effective length of database: 14,460,918
effective search space: 2226981372
effective search space used: 2226981372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.