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Search of human proteins with 239748250
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748250 PREDICTED: hypothetical protein XP_002346622 [Homo
sapiens]
(115 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753725 PREDICTED: hypothetical protein [Homo sapiens] 239 3e-64
gi|239748250 PREDICTED: hypothetical protein XP_002346622 [Homo ... 239 3e-64
gi|239742151 PREDICTED: hypothetical protein XP_002342416 [Homo ... 239 3e-64
gi|117414150 transmembrane 7 superfamily member 2 [Homo sapiens] 29 0.92
gi|148839376 PWWP domain containing 2 isoform 1 [Homo sapiens] 29 0.92
gi|170763515 DMRT-like family A1 [Homo sapiens] 29 0.92
gi|148839311 PWWP domain containing 2 isoform 2 [Homo sapiens] 29 0.92
gi|38787970 tensin like C1 domain containing phosphatase isoform... 28 1.2
gi|38787957 tensin like C1 domain containing phosphatase isoform... 28 1.2
gi|38787941 tensin like C1 domain containing phosphatase isoform... 28 1.2
gi|54400758 DKFZP564O0823 protein [Homo sapiens] 28 1.2
gi|122937193 DNB5 [Homo sapiens] 28 1.6
gi|238908524 hypothetical protein LOC389333 [Homo sapiens] 27 2.7
gi|239750735 PREDICTED: hypothetical protein XP_002347519 [Homo ... 27 3.5
gi|209862789 microtubule associated monoxygenase, calponin and L... 27 3.5
gi|74272280 aryl hydrocarbon receptor interacting protein-like 1... 27 3.5
gi|74272278 aryl hydrocarbon receptor interacting protein-like 1... 27 3.5
gi|74272276 aryl hydrocarbon receptor interacting protein-like 1... 27 3.5
gi|45120115 hypothetical protein LOC56905 [Homo sapiens] 27 3.5
gi|239756441 PREDICTED: hypothetical protein LOC388199 [Homo sap... 27 4.5
gi|37595528 polyhomeotic-like 2 isoform a [Homo sapiens] 27 4.5
gi|61966733 hypothetical protein LOC388199 [Homo sapiens] 27 4.5
gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Ho... 26 5.9
gi|161169015 neuron navigator 2 isoform 3 [Homo sapiens] 26 5.9
gi|161169013 neuron navigator 2 isoform 1 [Homo sapiens] 26 5.9
gi|38044282 neuron navigator 2 isoform 2 [Homo sapiens] 26 5.9
gi|4502831 cholinergic receptor, nicotinic, alpha 7 precursor [H... 26 7.7
gi|169209217 PREDICTED: similar to hCG2042704 [Homo sapiens] 26 7.7
gi|169161714 PREDICTED: tetratricopeptide repeat domain 34 [Homo... 26 7.7
gi|169218206 PREDICTED: similar to hCG2042704 [Homo sapiens] 26 7.7
>gi|239753725 PREDICTED: hypothetical protein [Homo sapiens]
Length = 115
Score = 239 bits (611), Expect = 3e-64
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 1 MCRQVSRCGPSRQVTAALAGVILNQAVSEMFLEKLFPEVPEPVLPIDKPCRSQKTDSGGL 60
MCRQVSRCGPSRQVTAALAGVILNQAVSEMFLEKLFPEVPEPVLPIDKPCRSQKTDSGGL
Sbjct: 1 MCRQVSRCGPSRQVTAALAGVILNQAVSEMFLEKLFPEVPEPVLPIDKPCRSQKTDSGGL 60
Query: 61 HPETRLRTEARGFQAAAFSVLQQGASQPPWLREQGTPAMLCPLPPFPECPSVQRG 115
HPETRLRTEARGFQAAAFSVLQQGASQPPWLREQGTPAMLCPLPPFPECPSVQRG
Sbjct: 61 HPETRLRTEARGFQAAAFSVLQQGASQPPWLREQGTPAMLCPLPPFPECPSVQRG 115
>gi|239748250 PREDICTED: hypothetical protein XP_002346622 [Homo
sapiens]
Length = 115
Score = 239 bits (611), Expect = 3e-64
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 1 MCRQVSRCGPSRQVTAALAGVILNQAVSEMFLEKLFPEVPEPVLPIDKPCRSQKTDSGGL 60
MCRQVSRCGPSRQVTAALAGVILNQAVSEMFLEKLFPEVPEPVLPIDKPCRSQKTDSGGL
Sbjct: 1 MCRQVSRCGPSRQVTAALAGVILNQAVSEMFLEKLFPEVPEPVLPIDKPCRSQKTDSGGL 60
Query: 61 HPETRLRTEARGFQAAAFSVLQQGASQPPWLREQGTPAMLCPLPPFPECPSVQRG 115
HPETRLRTEARGFQAAAFSVLQQGASQPPWLREQGTPAMLCPLPPFPECPSVQRG
Sbjct: 61 HPETRLRTEARGFQAAAFSVLQQGASQPPWLREQGTPAMLCPLPPFPECPSVQRG 115
>gi|239742151 PREDICTED: hypothetical protein XP_002342416 [Homo
sapiens]
Length = 115
Score = 239 bits (611), Expect = 3e-64
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 1 MCRQVSRCGPSRQVTAALAGVILNQAVSEMFLEKLFPEVPEPVLPIDKPCRSQKTDSGGL 60
MCRQVSRCGPSRQVTAALAGVILNQAVSEMFLEKLFPEVPEPVLPIDKPCRSQKTDSGGL
Sbjct: 1 MCRQVSRCGPSRQVTAALAGVILNQAVSEMFLEKLFPEVPEPVLPIDKPCRSQKTDSGGL 60
Query: 61 HPETRLRTEARGFQAAAFSVLQQGASQPPWLREQGTPAMLCPLPPFPECPSVQRG 115
HPETRLRTEARGFQAAAFSVLQQGASQPPWLREQGTPAMLCPLPPFPECPSVQRG
Sbjct: 61 HPETRLRTEARGFQAAAFSVLQQGASQPPWLREQGTPAMLCPLPPFPECPSVQRG 115
>gi|117414150 transmembrane 7 superfamily member 2 [Homo sapiens]
Length = 418
Score = 28.9 bits (63), Expect = 0.92
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 9/102 (8%)
Query: 6 SRCGPSRQV--TAALAG--VILNQAVSEMFLEKLFPEVPEPVLPIDKPCRSQKTDSGGLH 61
+R GP+R + A+L G V+ + ++L L + +LP K Q+ L
Sbjct: 37 ARSGPARLLGPPASLPGLEVLWSPRALLLWLAWLGLQAALYLLPARKVAEGQE-----LK 91
Query: 62 PETRLRTEARGFQAAAFSVLQQGASQPPWLREQGTPAMLCPL 103
++RLR GFQA + L G L P ML PL
Sbjct: 92 DKSRLRYPINGFQALVLTALLVGLGMSAGLPLGALPEMLLPL 133
>gi|148839376 PWWP domain containing 2 isoform 1 [Homo sapiens]
Length = 590
Score = 28.9 bits (63), Expect = 0.92
Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 11/74 (14%)
Query: 42 PVLPIDKPCRSQKTDSGGLHPETRLRTEARGFQAAAFSVLQQGASQPPWLREQGTPAMLC 101
P+ P+ + S DS G PE V+Q G+S PP R P
Sbjct: 50 PLAPLPQVDESPVNDSHGRAPEE-----------GDAEVMQLGSSSPPPARGVQPPETTR 98
Query: 102 PLPPFPECPSVQRG 115
P PP P P + G
Sbjct: 99 PEPPPPLVPPLPAG 112
>gi|170763515 DMRT-like family A1 [Homo sapiens]
Length = 504
Score = 28.9 bits (63), Expect = 0.92
Identities = 24/73 (32%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 37 PEVPEPVLPIDKPCRSQKTDSGGLHPETRLRTEARGFQAAAFSVLQQGASQPPWLREQGT 96
P P P LP+ P Q + P LR A AAA + G P L E G
Sbjct: 28 PPPPSPALPV--PSGMQVPPAFLRPPSLFLRAAAAAAAAAAATSGSGGCPPAPGL-ESGV 84
Query: 97 PAMLCPLPPFPEC 109
A+ C P P+C
Sbjct: 85 GAVGCGYPRTPKC 97
>gi|148839311 PWWP domain containing 2 isoform 2 [Homo sapiens]
Length = 499
Score = 28.9 bits (63), Expect = 0.92
Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 11/74 (14%)
Query: 42 PVLPIDKPCRSQKTDSGGLHPETRLRTEARGFQAAAFSVLQQGASQPPWLREQGTPAMLC 101
P+ P+ + S DS G PE V+Q G+S PP R P
Sbjct: 50 PLAPLPQVDESPVNDSHGRAPEE-----------GDAEVMQLGSSSPPPARGVQPPETTR 98
Query: 102 PLPPFPECPSVQRG 115
P PP P P + G
Sbjct: 99 PEPPPPLVPPLPAG 112
>gi|38787970 tensin like C1 domain containing phosphatase isoform 3
[Homo sapiens]
Length = 1285
Score = 28.5 bits (62), Expect = 1.2
Identities = 26/92 (28%), Positives = 30/92 (32%), Gaps = 17/92 (18%)
Query: 33 EKLFPEVPEPVLPIDKPC-----RSQKTDSGGLHPETRLRTEARGFQAAAF--------- 78
E L P P P P RS S G P + + T G + A +
Sbjct: 843 EPLAPSPVSPTFPPSSPSDWPQERSPGGHSDGASPRSPVPTTLPGLRHAPWQGPRGPPDS 902
Query: 79 ---SVLQQGASQPPWLREQGTPAMLCPLPPFP 107
S L SQ PWL P P P FP
Sbjct: 903 PDGSPLTPVPSQMPWLVASPEPPQSSPTPAFP 934
>gi|38787957 tensin like C1 domain containing phosphatase isoform 2
[Homo sapiens]
Length = 1409
Score = 28.5 bits (62), Expect = 1.2
Identities = 26/92 (28%), Positives = 30/92 (32%), Gaps = 17/92 (18%)
Query: 33 EKLFPEVPEPVLPIDKPC-----RSQKTDSGGLHPETRLRTEARGFQAAAF--------- 78
E L P P P P RS S G P + + T G + A +
Sbjct: 967 EPLAPSPVSPTFPPSSPSDWPQERSPGGHSDGASPRSPVPTTLPGLRHAPWQGPRGPPDS 1026
Query: 79 ---SVLQQGASQPPWLREQGTPAMLCPLPPFP 107
S L SQ PWL P P P FP
Sbjct: 1027 PDGSPLTPVPSQMPWLVASPEPPQSSPTPAFP 1058
>gi|38787941 tensin like C1 domain containing phosphatase isoform 1
[Homo sapiens]
Length = 1419
Score = 28.5 bits (62), Expect = 1.2
Identities = 26/92 (28%), Positives = 30/92 (32%), Gaps = 17/92 (18%)
Query: 33 EKLFPEVPEPVLPIDKPC-----RSQKTDSGGLHPETRLRTEARGFQAAAF--------- 78
E L P P P P RS S G P + + T G + A +
Sbjct: 977 EPLAPSPVSPTFPPSSPSDWPQERSPGGHSDGASPRSPVPTTLPGLRHAPWQGPRGPPDS 1036
Query: 79 ---SVLQQGASQPPWLREQGTPAMLCPLPPFP 107
S L SQ PWL P P P FP
Sbjct: 1037 PDGSPLTPVPSQMPWLVASPEPPQSSPTPAFP 1068
>gi|54400758 DKFZP564O0823 protein [Homo sapiens]
Length = 310
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 57 SGGLHPETRLRTEARGF-QAAAFSVLQQGASQPPWLREQGTPA 98
SGG+H T L + G +A + L Q A++PP L PA
Sbjct: 113 SGGVHLTTTLEEHSSGTPEAGVAATLSQSAAEPPTLISPQAPA 155
>gi|122937193 DNB5 [Homo sapiens]
Length = 748
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Query: 40 PEPVLPIDKPCRSQKTDSGGLHPETRLRT---EARGFQAAAFSVLQQGASQPPWLREQGT 96
P P P + PC + D G LHP+ R FS + A P L + G
Sbjct: 58 PSPPPPPNTPCPLELVDFGDLHPQRSFRELLFNGCILFGIEFSYAMETAYVTPVLLQMGL 117
Query: 97 PAMLCPL 103
P L L
Sbjct: 118 PDQLYSL 124
>gi|238908524 hypothetical protein LOC389333 [Homo sapiens]
Length = 1015
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 57 SGGLHPETRLRTEARGFQAAAFSVLQ----QGASQPPWLREQGTPAMLCPLPPFPECPS 111
SG P+ +LRT G F V GA ++ PA + PLPP P P+
Sbjct: 94 SGPRPPQPQLRTLPSGEMEVIFGVGPLFGCSGADDREAQQQFTEPAFISPLPPGPASPA 152
>gi|239750735 PREDICTED: hypothetical protein XP_002347519 [Homo
sapiens]
Length = 426
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 8/44 (18%)
Query: 77 AFSVLQQGASQPPWLREQGTPAMLCPLP--------PFPECPSV 112
++S+L PPW+ +P++L P P P P PS+
Sbjct: 383 SYSILDTSCVTPPWVFSLPSPSILIPFPATSHLHNRPCPAPPSL 426
>gi|209862789 microtubule associated monoxygenase, calponin and LIM
domain containing 3 isoform 1 [Homo sapiens]
Length = 2002
Score = 26.9 bits (58), Expect = 3.5
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 10/81 (12%)
Query: 33 EKLFPEVPEPVLPIDKPCRSQKTDSGGLHPETRLRTEARGFQAAAFSVLQQGASQPPWLR 92
E+LFPE P+LP +KP +D +H R + A + + G+ QP
Sbjct: 1195 ERLFPE---PLLPKEKPKADAPSDLKAVHSPIRSQPVT---LPEARTPVSPGSPQPQPPV 1248
Query: 93 EQGTPAMLCPLPPFPECPSVQ 113
TP P P P C Q
Sbjct: 1249 AASTP----PPSPLPICSQPQ 1265
>gi|74272280 aryl hydrocarbon receptor interacting protein-like 1
isoform 3 [Homo sapiens]
Length = 324
Score = 26.9 bits (58), Expect = 3.5
Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 11/102 (10%)
Query: 14 VTAALAGVILNQAVSEMFLEKLFPEVPEPVLPIDKPCRSQKTDSGGLHPETRLRTEARGF 73
V A + N+A ++ L+K+ P + + R + E RLR
Sbjct: 209 VRARAHAEVWNEAEAKADLQKVLELEPSMQKAVRRELRLLENRMAEKQEEERLRCR---- 264
Query: 74 QAAAFSVLQQGASQPPWLREQGTPAMLCPLPPF--PECPSVQ 113
++L QGA+QPP PA PP P PS +
Sbjct: 265 -----NMLSQGATQPPAEPPTEPPAQSSTEPPAEPPTAPSAE 301
>gi|74272278 aryl hydrocarbon receptor interacting protein-like 1
isoform 2 [Homo sapiens]
Length = 321
Score = 26.9 bits (58), Expect = 3.5
Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 11/102 (10%)
Query: 14 VTAALAGVILNQAVSEMFLEKLFPEVPEPVLPIDKPCRSQKTDSGGLHPETRLRTEARGF 73
V A + N+A ++ L+K+ P + + R + E RLR
Sbjct: 206 VRARAHAEVWNEAEAKADLQKVLELEPSMQKAVRRELRLLENRMAEKQEEERLRCR---- 261
Query: 74 QAAAFSVLQQGASQPPWLREQGTPAMLCPLPPF--PECPSVQ 113
++L QGA+QPP PA PP P PS +
Sbjct: 262 -----NMLSQGATQPPAEPPTEPPAQSSTEPPAEPPTAPSAE 298
>gi|74272276 aryl hydrocarbon receptor interacting protein-like 1
isoform 1 [Homo sapiens]
Length = 384
Score = 26.9 bits (58), Expect = 3.5
Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 11/102 (10%)
Query: 14 VTAALAGVILNQAVSEMFLEKLFPEVPEPVLPIDKPCRSQKTDSGGLHPETRLRTEARGF 73
V A + N+A ++ L+K+ P + + R + E RLR
Sbjct: 269 VRARAHAEVWNEAEAKADLQKVLELEPSMQKAVRRELRLLENRMAEKQEEERLRCR---- 324
Query: 74 QAAAFSVLQQGASQPPWLREQGTPAMLCPLPPF--PECPSVQ 113
++L QGA+QPP PA PP P PS +
Sbjct: 325 -----NMLSQGATQPPAEPPTEPPAQSSTEPPAEPPTAPSAE 361
>gi|45120115 hypothetical protein LOC56905 [Homo sapiens]
Length = 1047
Score = 26.9 bits (58), Expect = 3.5
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 37 PEVPEPVLPIDKPCRSQKTDSGGLHPETRLRT----EARGFQAAAFS--VLQQGASQPPW 90
P P LP CR + G P L+ + G+QA L+Q A+Q P+
Sbjct: 276 PPHPPQALPCPPACRHPEKQ-GSYSPALPLQPLGGHKGTGYQAGGLGSPYLRQQAAQAPY 334
Query: 91 LREQGTPAMLCPLPPFP 107
+ G A P P P
Sbjct: 335 IPPLGLDAYPYPSAPLP 351
>gi|239756441 PREDICTED: hypothetical protein LOC388199 [Homo
sapiens]
Length = 373
Score = 26.6 bits (57), Expect = 4.5
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 64 TRLRTEARGFQAAAFSVLQQGASQPPWLREQGTPAMLCP----LPPFP 107
+ L T + Q A +V + P LR QGTPAM P PP P
Sbjct: 88 SELPTSSGTAQPLANAVCEVQTVPGPGLRPQGTPAMRAPSHKGTPPTP 135
>gi|37595528 polyhomeotic-like 2 isoform a [Homo sapiens]
Length = 858
Score = 26.6 bits (57), Expect = 4.5
Identities = 29/99 (29%), Positives = 37/99 (37%), Gaps = 13/99 (13%)
Query: 3 RQVSRCGPSRQVTAALAGVILNQAVSEMFLEKLFPEVPE-----PVLPIDKP-----CRS 52
R V + P Q+ + V L Q SE L P P P + KP C
Sbjct: 367 RPVLQAEPHPQLASVSPSVAL-QPSSEAHAMPLGPVTPALPLQCPTANLHKPGGSQQCHP 425
Query: 53 QKTDSGGL--HPETRLRTEARGFQAAAFSVLQQGASQPP 89
D+G HPE T R FQ + +LQ + PP
Sbjct: 426 PTPDTGPQNGHPEGVPHTPQRRFQHTSAVILQLQPASPP 464
>gi|61966733 hypothetical protein LOC388199 [Homo sapiens]
Length = 402
Score = 26.6 bits (57), Expect = 4.5
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 64 TRLRTEARGFQAAAFSVLQQGASQPPWLREQGTPAMLCP----LPPFP 107
+ L T + Q A +V + P LR QGTPAM P PP P
Sbjct: 88 SELPTSSGTAQPLANAVCEVQTVPGPGLRPQGTPAMRAPSHKGTPPTP 135
>gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Homo
sapiens]
Length = 918
Score = 26.2 bits (56), Expect = 5.9
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 22 ILNQAVSEMFLEK----LFPEVPEPVLPIDKPCRSQKTDSGGLHPETRLRTE 69
+ + V+E F++ L P+ P+ V P D PC++ GG P T LRTE
Sbjct: 788 LFSDLVAEKFIDDMEDVLCPD-PQIVCP-DLPCQTDAPWPGGEPPVTFLRTE 837
>gi|161169015 neuron navigator 2 isoform 3 [Homo sapiens]
Length = 2365
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 79 SVLQQGASQPPW------LREQGTPAMLCPLPPFPECP 110
++ Q GA+ PW ++ T +ML PP PE P
Sbjct: 283 AIPQPGAATKPWRSKSLSVKHSATVSMLSVKPPGPEAP 320
>gi|161169013 neuron navigator 2 isoform 1 [Homo sapiens]
Length = 2432
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 79 SVLQQGASQPPW------LREQGTPAMLCPLPPFPECP 110
++ Q GA+ PW ++ T +ML PP PE P
Sbjct: 347 AIPQPGAATKPWRSKSLSVKHSATVSMLSVKPPGPEAP 384
>gi|38044282 neuron navigator 2 isoform 2 [Homo sapiens]
Length = 2429
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 79 SVLQQGASQPPW------LREQGTPAMLCPLPPFPECP 110
++ Q GA+ PW ++ T +ML PP PE P
Sbjct: 347 AIPQPGAATKPWRSKSLSVKHSATVSMLSVKPPGPEAP 384
>gi|4502831 cholinergic receptor, nicotinic, alpha 7 precursor
[Homo sapiens]
Length = 502
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 7 RCGPSRQVTAALAGVILNQAVSEMFLEKLFPEVPEPVLPIDKP 49
RC P V ALA +L+ ++ F KL+ E+ + P+++P
Sbjct: 2 RCSPGG-VWLALAASLLHVSLQGEFQRKLYKELVKNYNPLERP 43
>gi|169209217 PREDICTED: similar to hCG2042704 [Homo sapiens]
Length = 511
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 86 SQPPWLREQGTPAMLCPLPPFPECPS 111
S+PP RE+ P+ P+P P PS
Sbjct: 45 SRPPVSRERDDPSAPRPVPALPSSPS 70
>gi|169161714 PREDICTED: tetratricopeptide repeat domain 34 [Homo
sapiens]
Length = 747
Score = 25.8 bits (55), Expect = 7.7
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 19 AGVILNQAVSEMFLE----KLFPEVPEPVLPIDKPCRSQKTDSGGLHPETRLRTEARGFQ 74
A +++ +A S FL+ +F + E R Q + + R+R +A+
Sbjct: 266 AALLVTRAASAFFLDGRAQDVFWNLQEAFRESPSGARRQFQAVFSVQDQERVRAQAQEAA 325
Query: 75 AAAFSVLQQGASQPPWLREQGTPAMLCPL 103
F+ Q+ P LRE +L P+
Sbjct: 326 DVGFARFQEAVRNHPELREDAGRELLAPV 354
>gi|169218206 PREDICTED: similar to hCG2042704 [Homo sapiens]
Length = 317
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 86 SQPPWLREQGTPAMLCPLPPFPECPS 111
S+PP RE+ P+ P+P P PS
Sbjct: 45 SRPPVSRERDDPSAPRPVPALPSSPS 70
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,246,350
Number of Sequences: 37866
Number of extensions: 235120
Number of successful extensions: 792
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 779
Number of HSP's gapped (non-prelim): 34
length of query: 115
length of database: 18,247,518
effective HSP length: 85
effective length of query: 30
effective length of database: 15,028,908
effective search space: 450867240
effective search space used: 450867240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.