BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239747883 PREDICTED: hypothetical protein [Homo sapiens] (245 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239747883 PREDICTED: hypothetical protein [Homo sapiens] 505 e-143 gi|239741764 PREDICTED: hypothetical protein XP_002342289 [Homo ... 402 e-112 gi|239753310 PREDICTED: hypothetical protein XP_002345618 [Homo ... 354 4e-98 gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 76 3e-14 gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 76 3e-14 gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 76 3e-14 gi|239753932 PREDICTED: similar to Cytochrome c oxidase subunit ... 72 4e-13 gi|239748474 PREDICTED: similar to Cytochrome c oxidase subunit ... 72 4e-13 gi|239742438 PREDICTED: hypothetical protein XP_002342515 [Homo ... 72 4e-13 gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 71 7e-13 gi|239753397 PREDICTED: similar to Cytochrome c oxidase subunit ... 70 2e-12 gi|239752847 PREDICTED: hypothetical protein XP_002345402 [Homo ... 70 2e-12 gi|239747968 PREDICTED: hypothetical protein XP_002346519 [Homo ... 70 2e-12 gi|239747402 PREDICTED: hypothetical protein XP_002346644 [Homo ... 70 2e-12 gi|239741863 PREDICTED: hypothetical protein XP_002342327 [Homo ... 70 2e-12 gi|239741228 PREDICTED: hypothetical protein XP_002342139 [Homo ... 70 2e-12 gi|239755520 PREDICTED: similar to Cytochrome c oxidase subunit ... 69 4e-12 gi|239750010 PREDICTED: hypothetical protein XP_002347252 [Homo ... 69 4e-12 gi|239744323 PREDICTED: hypothetical protein XP_002343117 [Homo ... 69 4e-12 gi|239755319 PREDICTED: similar to cytochrome c oxidase subunit ... 68 8e-12 gi|239749812 PREDICTED: hypothetical protein XP_002347169 [Homo ... 68 8e-12 gi|239744102 PREDICTED: hypothetical protein XP_002343062 [Homo ... 68 8e-12 gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 67 1e-11 gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 67 1e-11 gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 66 3e-11 gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 65 7e-11 gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 65 7e-11 gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 65 7e-11 gi|50511941 EMI domain containing 1 [Homo sapiens] 65 7e-11 gi|239754143 PREDICTED: similar to cytochrome c oxidase subunit ... 64 1e-10 >gi|239747883 PREDICTED: hypothetical protein [Homo sapiens] Length = 245 Score = 505 bits (1301), Expect = e-143 Identities = 245/245 (100%), Positives = 245/245 (100%) Query: 1 MAKGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVK 60 MAKGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVK Sbjct: 1 MAKGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVK 60 Query: 61 DSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPL 120 DSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPL Sbjct: 61 DSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPL 120 Query: 121 SHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLG 180 SHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLG Sbjct: 121 SHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLG 180 Query: 181 PPGEMVTGKGVNGQVFQLRDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQ 240 PPGEMVTGKGVNGQVFQLRDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQ Sbjct: 181 PPGEMVTGKGVNGQVFQLRDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQ 240 Query: 241 EIETV 245 EIETV Sbjct: 241 EIETV 245 >gi|239741764 PREDICTED: hypothetical protein XP_002342289 [Homo sapiens] Length = 433 Score = 402 bits (1033), Expect = e-112 Identities = 201/221 (90%), Positives = 201/221 (90%), Gaps = 18/221 (8%) Query: 43 GPSGPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPL 102 GPSGPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPL Sbjct: 213 GPSGPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPL 272 Query: 103 SPLGPDLIPRPPRLPLPLSHSW------------------DSWDFLAFLESVGRTEPGEA 144 SPLGPDLIPRPPRLPLPLSHSW DSWDFLAFLESVGRTEP EA Sbjct: 273 SPLGPDLIPRPPRLPLPLSHSWASWVFLVCLATPDARNSGDSWDFLAFLESVGRTEPEEA 332 Query: 145 GDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGPPGEMVTGKGVNGQVFQLRDEITF 204 GDREKGPQGQPGPRGATGKSGAKGPQSAPG IGNLGPPGEMVTGKGVNGQVFQLRDEITF Sbjct: 333 GDREKGPQGQPGPRGATGKSGAKGPQSAPGRIGNLGPPGEMVTGKGVNGQVFQLRDEITF 392 Query: 205 HDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245 HDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV Sbjct: 393 HDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 433 >gi|239753310 PREDICTED: hypothetical protein XP_002345618 [Homo sapiens] Length = 415 Score = 354 bits (908), Expect = 4e-98 Identities = 183/221 (82%), Positives = 183/221 (82%), Gaps = 36/221 (16%) Query: 43 GPSGPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPL 102 GPSGPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPL Sbjct: 213 GPSGPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPL 272 Query: 103 SPLGPDLIPRPPRLPLPLSHSW------------------DSWDFLAFLESVGRTEPGEA 144 SPLGPDLIPRPPRLPLPLSHSW DSWDFLAFLESVGRTEP EA Sbjct: 273 SPLGPDLIPRPPRLPLPLSHSWASWVFLVCLATPDARNSGDSWDFLAFLESVGRTEPEEA 332 Query: 145 GDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGPPGEMVTGKGVNGQVFQLRDEITF 204 GDREKG PQSAPGGIGNLGPPGEMVTGKGVNGQVFQLRDEITF Sbjct: 333 GDREKG------------------PQSAPGGIGNLGPPGEMVTGKGVNGQVFQLRDEITF 374 Query: 205 HDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245 HDH LVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV Sbjct: 375 HDHTLVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 415 >gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo sapiens] Length = 1650 Score = 75.9 bits (185), Expect = 3e-14 Identities = 62/191 (32%), Positives = 71/191 (37%), Gaps = 61/191 (31%) Query: 4 GPAGSIGL-------GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGP 56 GPAG G+ G+VG QK G + E P GP GP GP+G PG Sbjct: 986 GPAGPPGVAGEDGDKGEVGDPGQKGTKGNKG----------EHGPPGPPGPIGPVGQPGA 1035 Query: 57 PGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLV--PLSPLGPDLIPRPP 114 G P A P G + P P+G +P P Sbjct: 1036 AGADGE-----------------PGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPS 1078 Query: 115 RLPLPLSHSWDSWDFLAFLESVGRTEPGEAGD-REKGPQGQPGPRGATGKSGAKGPQSAP 173 E GE GD GP G PGPRG G +GA GPQ P Sbjct: 1079 G------------------------EKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPP 1114 Query: 174 GGIGNLGPPGE 184 GG+GNLGPPGE Sbjct: 1115 GGVGNLGPPGE 1125 Score = 62.4 bits (150), Expect = 3e-10 Identities = 61/201 (30%), Positives = 71/201 (35%), Gaps = 50/201 (24%) Query: 4 GPAGSIGL-GDVGAKAQK-----PGGGRRDSIVP-RTWEETEGIP-----------KGPS 45 GP G GL G G + K PG +D R + G+P +GPS Sbjct: 863 GPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPS 922 Query: 46 GPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSA--SLVPLS 103 GP GP G PG G S I P P P G P+ Sbjct: 923 GPPGPAGSPGERGAAGSGGPIG-----------PPGRPGPQGPPGAAGEKGVPGEKGPIG 971 Query: 104 PLGPDLIPRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAG-DREKGPQGQPGPRGATG 162 P G D + P LP P PG AG D +KG G PG +G G Sbjct: 972 PTGRDGVQGPVGLPGPAG------------------PPGVAGEDGDKGEVGDPGQKGTKG 1013 Query: 163 KSGAKGPQSAPGGIGNLGPPG 183 G GP PG IG +G PG Sbjct: 1014 NKGEHGPPGPPGPIGPVGQPG 1034 Score = 59.7 bits (143), Expect = 2e-09 Identities = 51/160 (31%), Positives = 63/160 (39%), Gaps = 41/160 (25%) Query: 42 KGPSGPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVP 101 +GP GP+GP G GPPG++ + P P G R P + +P Sbjct: 312 EGPPGPEGPAGLIGPPGIQGN--------------------PGPVGDPGERGPPGRAGLP 351 Query: 102 LSPLGPDLIPRPPRLPLPL-----SHSWDSWDFLAFLESVG-----------RTEPGEAG 145 G D P PP L L S D +A E+ R PG G Sbjct: 352 ----GSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMG 407 Query: 146 DREK-GPQGQPGPRGATGKSGAKGPQSAPGGIGNLGPPGE 184 + GP GQPG G G+SG GPQ G G GPPG+ Sbjct: 408 YTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGK 447 Score = 55.1 bits (131), Expect = 6e-08 Identities = 62/186 (33%), Positives = 71/186 (38%), Gaps = 42/186 (22%) Query: 4 GPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEET-EGIPKGPSGPQGPLGYPGPPGVKD 61 GP G G G GAK + G P + T E P GP G +GP G PG G + Sbjct: 1190 GPPGEGGPRGQDGAKGDRGEDGEPGQ--PGSPGPTGENGPPGPLGKRGPAGSPGSEGRQG 1247 Query: 62 SKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLP-LPL 120 K P A TG P+ P GP P P L LP Sbjct: 1248 GKG-----------AKGDPGAIGAPGKTG----------PVGPAGPAGKPGPDGLRGLP- 1285 Query: 121 SHSWDSWDFLAFLESVGRT-EPGEAGDR-EKGPQGQPGPRGATGKSGAKGPQSAPGGIGN 178 SVG+ PG G GP G PG G G +GAKG + PG IG Sbjct: 1286 -------------GSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGL 1332 Query: 179 LGPPGE 184 +GPPGE Sbjct: 1333 IGPPGE 1338 Score = 54.7 bits (130), Expect = 7e-08 Identities = 58/184 (31%), Positives = 70/184 (38%), Gaps = 44/184 (23%) Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIP--KGPSGPQGPLGYPGPPGV 59 +GPAGS G G G K K G G P GP GP GP G PGP G+ Sbjct: 1234 RGPAGSPGSEGRQGGKGAKGDPG------------AIGAPGKTGPVGPAGPAGKPGPDGL 1281 Query: 60 KDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLP 119 + P G R + P P+GP P P L Sbjct: 1282 RG--------------------LPGSVGQQG-RPGATGQAGPPGPVGP---PGLPGLRGD 1317 Query: 120 LSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNL 179 + + +G PGE G EKG +G PGP+G+ G+ G G A G IG Sbjct: 1318 AGAKGEK-GHPGLIGLIG--PPGEQG--EKGDRGLPGPQGSPGQKGEMGIPGASGPIGPG 1372 Query: 180 GPPG 183 GPPG Sbjct: 1373 GPPG 1376 Score = 53.9 bits (128), Expect = 1e-07 Identities = 62/201 (30%), Positives = 81/201 (40%), Gaps = 22/201 (10%) Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVK- 60 +G G+ GL G G ++ G I PR G P+G GP+GP G PGPPGV+ Sbjct: 487 RGDTGAQGLPGPPGEDGERGDDGE---IGPRGLPGESG-PRGLLGPKGPPGIPGPPGVRG 542 Query: 61 -DSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPL- 118 D +L Q +P T G+ P A + P GP P P +P Sbjct: 543 MDGPQGPKGSLGPQGEPGPPGQQGTPGTQ-GLPGPQGA-IGPHGEKGPQGKPGLPGMPGS 600 Query: 119 --PLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGI 176 P H E T+ + +GP G PGPRG G G +G + G Sbjct: 601 DGPPGHPGK--------EGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEK 652 Query: 177 GNLGPPGEM--VTGKGVNGQV 195 G G PG + KG G+V Sbjct: 653 GEDGFPGFKGDIGVKGDRGEV 673 Score = 53.5 bits (127), Expect = 2e-07 Identities = 65/204 (31%), Positives = 76/204 (37%), Gaps = 44/204 (21%) Query: 4 GPAGSIGLGDVGAKAQKPG-GGRRDSIVPRTWEETEGIP-----KGPSGPQGPLGYPGPP 57 GP G+IG KPG G S P EG P +GPSGPQGPLGYPGP Sbjct: 575 GPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPR 634 Query: 58 GVKDSKPMICIALALDHHTLYTPQAPSPATA--TGIRQPHSASLVPLS-----PLGPDLI 110 GVK + L H + P G++ VP S P GP Sbjct: 635 GVKGVDGI----RGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGR 690 Query: 111 PRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQ 170 P P P PG G EKG G PG G G+ G KG Sbjct: 691 TGPTGDPGP---------------------PGLMG--EKGKLGVPGLPGYPGRQGPKGSL 727 Query: 171 SAPGGIGNLGPPGEMVTGKGVNGQ 194 PG G G G +G++G+ Sbjct: 728 GFPGFPGASGEKG----ARGLSGK 747 Score = 53.5 bits (127), Expect = 2e-07 Identities = 56/187 (29%), Positives = 69/187 (36%), Gaps = 36/187 (19%) Query: 4 GPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62 GP+G G GDVG G R P + GP GP G +G GPPG K Sbjct: 1076 GPSGEKGETGDVGPMGPPGPPGPRGPAGPNGAD-------GPQGPPGGVGNLGPPGEK-G 1127 Query: 63 KPMICIALALDHHTLYTPQAPSPATATGIR----QPHSASLVPLSPLGPDLIPRPPRLPL 118 +P + + P P G + QP P P GP P P Sbjct: 1128 EPGESGSPGIQGE----PGVKGPRGERGEKGESGQPGEPG--PPGPKGPTGDDGPKGNPG 1181 Query: 119 PLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGN 178 P+ D PG G E GP+GQ G +G G+ G G +PG G Sbjct: 1182 PVGFPGD---------------PGPPG--EGGPRGQDGAKGDRGEDGEPGQPGSPGPTGE 1224 Query: 179 LGPPGEM 185 GPPG + Sbjct: 1225 NGPPGPL 1231 Score = 52.4 bits (124), Expect = 4e-07 Identities = 56/184 (30%), Positives = 66/184 (35%), Gaps = 39/184 (21%) Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKD 61 +GP GS+G G GA +K G PR E P GP G +GP G G G K Sbjct: 721 QGPKGSLGFPGFPGASGEKGARGLSGKSGPRG----ERGPTGPRGQRGPRGATGKSGAKG 776 Query: 62 SKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLS 121 + L PQ P+ G P P P G D +P P Sbjct: 777 TSGGDGPHGPPGERGLPGPQGPN-----GFPGPKG----PPGPPGKDGLPGHPG------ 821 Query: 122 HSWDSWDFLAFLESVGRTEPGEAGDREK-GPQGQPGPRGATGKSGAKGPQSAPGGIGNLG 180 + GE G + K GP G PG G G +G GP G G G Sbjct: 822 ------------------QRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPG 863 Query: 181 PPGE 184 PPGE Sbjct: 864 PPGE 867 Score = 51.2 bits (121), Expect = 8e-07 Identities = 54/188 (28%), Positives = 67/188 (35%), Gaps = 46/188 (24%) Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIP--KGPSGPQGPLGYPGPPGVK 60 GP G G G GA + G R ++ G+P KG G G G PGPPG Sbjct: 443 GPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGED 502 Query: 61 DSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPL 120 + D + P + G+ L P GP IP PP + Sbjct: 503 GERG--------DDGEIGPRGLPGESGPRGL----------LGPKGPPGIPGPPGV---- 540 Query: 121 SHSWDSWDFLAFLESVGRTEPGEAGDREK-GPQGQPGP---RGATGKSGAKGPQSAPGGI 176 R G G + GPQG+PGP +G G G GPQ A G Sbjct: 541 -----------------RGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPH 583 Query: 177 GNLGPPGE 184 G GP G+ Sbjct: 584 GEKGPQGK 591 Score = 50.1 bits (118), Expect = 2e-06 Identities = 56/194 (28%), Positives = 69/194 (35%), Gaps = 43/194 (22%) Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62 GP G G+ G GA + G R P +G+P G +G +G G PGPPG Sbjct: 833 GPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLP-GTAGKEGTKGDPGPPGAPGK 891 Query: 63 KPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPR---------- 112 + L P A G++ P P GP P Sbjct: 892 DGPAGLRGFPGERGL-----PGTAGGPGLKGNEG----PSGPPGPAGSPGERGAAGSGGP 942 Query: 113 --PPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQ 170 PP P P + PG AG EKG G+ GP G TG+ G +GP Sbjct: 943 IGPPGRPGP------------------QGPPGAAG--EKGVPGEKGPIGPTGRDGVQGPV 982 Query: 171 SAPGGIGNLGPPGE 184 PG G G GE Sbjct: 983 GLPGPAGPPGVAGE 996 Score = 49.3 bits (116), Expect = 3e-06 Identities = 59/207 (28%), Positives = 76/207 (36%), Gaps = 50/207 (24%) Query: 3 KGPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPK-----GPSGPQGPLGYPGP 56 +GP GS+G G+ G Q+ G T+G+P GP G +GP G PG Sbjct: 547 QGPKGSLGPQGEPGPPGQQGTPG------------TQGLPGPQGAIGPHGEKGPQGKPGL 594 Query: 57 PGV--KDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPP 114 PG+ D P H P P G + P S PL GP + Sbjct: 595 PGMPGSDGPP--------GH-----PGKEGPPGTKGNQGP-SGPQGPLGYPGPRGVKGVD 640 Query: 115 RLPLPLSHSWDSWD--FLAFLESVG----RTEPGEAGDREK----------GPQGQPGPR 158 + H + + F F +G R E G G R + GP G PGP Sbjct: 641 GIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPP 700 Query: 159 GATGKSGAKGPQSAPGGIGNLGPPGEM 185 G G+ G G PG G GP G + Sbjct: 701 GLMGEKGKLGVPGLPGYPGRQGPKGSL 727 Score = 47.8 bits (112), Expect = 9e-06 Identities = 56/187 (29%), Positives = 68/187 (36%), Gaps = 33/187 (17%) Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62 G +GS G+ G+ G K + G + + E PKGP+G GP G PGP G Sbjct: 1130 GESGSPGIQGEPGVKGPRGERGEKGES-GQPGEPGPPGPKGPTGDDGPKGNPGPVGF--- 1185 Query: 63 KPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLSH 122 P P P G R A G D P P P P Sbjct: 1186 -----------------PGDPGPPGEGGPRGQDGAK----GDRGEDGEPGQPGSPGPTGE 1224 Query: 123 SWDSWDFLAFLESVGRTEPGEAGDRE-KGPQGQPGPRGATGKS---GAKGPQSAPGGIGN 178 + L G PG G + KG +G PG GA GK+ G GP PG G Sbjct: 1225 NGPPGP-LGKRGPAG--SPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGL 1281 Query: 179 LGPPGEM 185 G PG + Sbjct: 1282 RGLPGSV 1288 Score = 47.4 bits (111), Expect = 1e-05 Identities = 57/202 (28%), Positives = 74/202 (36%), Gaps = 40/202 (19%) Query: 3 KGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIP--KGPSGPQGPLGYPGPPGVK 60 +GP G+ G GAK G G P G+P +GP+G GP G PGPPG K Sbjct: 763 RGPRGATGKS--GAKGTSGGDG------PHGPPGERGLPGPQGPNGFPGPKGPPGPPG-K 813 Query: 61 DSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLP--- 117 D P + P G+ P A+ P+G P PP P Sbjct: 814 DGLP----GHPGQRGEVGFQGKTGPPGPPGVVGPQGAA-GETGPMGERGHPGPPGPPGEQ 868 Query: 118 -LPLSHSWDSWDFLAFLESVGRTEPGEAGDREK----------GPQGQPGPRGATGKSGA 166 LP + + + +PG G K G +G PG G G G Sbjct: 869 GLPGTAGKEGT----------KGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGN 918 Query: 167 KGPQSAPGGIGNLGPPGEMVTG 188 +GP PG G+ G G +G Sbjct: 919 EGPSGPPGPAGSPGERGAAGSG 940 Score = 45.4 bits (106), Expect = 4e-05 Identities = 56/209 (26%), Positives = 76/209 (36%), Gaps = 48/209 (22%) Query: 3 KGPAGSIGL-------GDVGAKAQKP-----GGGRRDSIVPRTWEETEGIPKGPS----G 46 +GP G GL G G P GGG + +V + + I + G Sbjct: 342 RGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRG 401 Query: 47 PQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLG 106 P GP+GY G PG L P +P + S L P P G Sbjct: 402 PPGPMGYTGRPG-----------------PLGQPGSPG-------LKGESGDLGPQGPRG 437 Query: 107 PDLIPRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDRE-KGPQGQPGPRGATGKSG 165 P + PP + D + +PG GDR G G PG +G G +G Sbjct: 438 PQGLTGPPGKAGRRGRA--GADGARGMPG----DPGVKGDRGFDGLPGLPGEKGHRGDTG 491 Query: 166 AKGPQSAPGGIGNLGPPGEMVTGKGVNGQ 194 A+G PG G G GE + +G+ G+ Sbjct: 492 AQGLPGPPGEDGERGDDGE-IGPRGLPGE 519 Score = 38.5 bits (88), Expect = 0.005 Identities = 24/56 (42%), Positives = 25/56 (44%), Gaps = 14/56 (25%) Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPG 58 GP G GL G G K K G G PKG G QGP G+PGPPG Sbjct: 1370 GPGGPPGLPGPAGPKGAKGATG-------------PGGPKGEKGVQGPPGHPGPPG 1412 Score = 37.4 bits (85), Expect = 0.012 Identities = 32/81 (39%), Positives = 37/81 (45%), Gaps = 21/81 (25%) Query: 4 GPAGSIGL-GDVGAKAQK-----------PG--GGRRDSIVPRTW-----EETEGIP--K 42 GP G GL GD GAK +K PG G + D +P + GIP Sbjct: 1307 GPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGAS 1366 Query: 43 GPSGPQGPLGYPGPPGVKDSK 63 GP GP GP G PGP G K +K Sbjct: 1367 GPIGPGGPPGLPGPAGPKGAK 1387 Score = 34.7 bits (78), Expect = 0.078 Identities = 17/41 (41%), Positives = 19/41 (46%) Query: 143 EAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGPPG 183 E G +GP G GP G G G +G G G GPPG Sbjct: 306 EPGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPG 346 Score = 30.4 bits (67), Expect = 1.5 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKD 61 +G G GL G G+ QK G + P G+P GP+GP+G G GP G K Sbjct: 1339 QGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLP-GPAGPKGAKGATGPGGPKG 1397 Query: 62 SK 63 K Sbjct: 1398 EK 1399 >gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo sapiens] Length = 1629 Score = 75.9 bits (185), Expect = 3e-14 Identities = 62/191 (32%), Positives = 71/191 (37%), Gaps = 61/191 (31%) Query: 4 GPAGSIGL-------GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGP 56 GPAG G+ G+VG QK G + E P GP GP GP+G PG Sbjct: 965 GPAGPPGVAGEDGDKGEVGDPGQKGTKGNKG----------EHGPPGPPGPIGPVGQPGA 1014 Query: 57 PGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLV--PLSPLGPDLIPRPP 114 G P A P G + P P+G +P P Sbjct: 1015 AGADGE-----------------PGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPS 1057 Query: 115 RLPLPLSHSWDSWDFLAFLESVGRTEPGEAGD-REKGPQGQPGPRGATGKSGAKGPQSAP 173 E GE GD GP G PGPRG G +GA GPQ P Sbjct: 1058 G------------------------EKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPP 1093 Query: 174 GGIGNLGPPGE 184 GG+GNLGPPGE Sbjct: 1094 GGVGNLGPPGE 1104 Score = 62.4 bits (150), Expect = 3e-10 Identities = 61/201 (30%), Positives = 71/201 (35%), Gaps = 50/201 (24%) Query: 4 GPAGSIGL-GDVGAKAQK-----PGGGRRDSIVP-RTWEETEGIP-----------KGPS 45 GP G GL G G + K PG +D R + G+P +GPS Sbjct: 842 GPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPS 901 Query: 46 GPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSA--SLVPLS 103 GP GP G PG G S I P P P G P+ Sbjct: 902 GPPGPAGSPGERGAAGSGGPIG-----------PPGRPGPQGPPGAAGEKGVPGEKGPIG 950 Query: 104 PLGPDLIPRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAG-DREKGPQGQPGPRGATG 162 P G D + P LP P PG AG D +KG G PG +G G Sbjct: 951 PTGRDGVQGPVGLPGPAG------------------PPGVAGEDGDKGEVGDPGQKGTKG 992 Query: 163 KSGAKGPQSAPGGIGNLGPPG 183 G GP PG IG +G PG Sbjct: 993 NKGEHGPPGPPGPIGPVGQPG 1013 Score = 59.7 bits (143), Expect = 2e-09 Identities = 51/160 (31%), Positives = 63/160 (39%), Gaps = 41/160 (25%) Query: 42 KGPSGPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVP 101 +GP GP+GP G GPPG++ + P P G R P + +P Sbjct: 291 EGPPGPEGPAGLIGPPGIQGN--------------------PGPVGDPGERGPPGRAGLP 330 Query: 102 LSPLGPDLIPRPPRLPLPL-----SHSWDSWDFLAFLESVG-----------RTEPGEAG 145 G D P PP L L S D +A E+ R PG G Sbjct: 331 ----GSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMG 386 Query: 146 DREK-GPQGQPGPRGATGKSGAKGPQSAPGGIGNLGPPGE 184 + GP GQPG G G+SG GPQ G G GPPG+ Sbjct: 387 YTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGK 426 Score = 55.1 bits (131), Expect = 6e-08 Identities = 62/186 (33%), Positives = 71/186 (38%), Gaps = 42/186 (22%) Query: 4 GPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEET-EGIPKGPSGPQGPLGYPGPPGVKD 61 GP G G G GAK + G P + T E P GP G +GP G PG G + Sbjct: 1169 GPPGEGGPRGQDGAKGDRGEDGEPGQ--PGSPGPTGENGPPGPLGKRGPAGSPGSEGRQG 1226 Query: 62 SKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLP-LPL 120 K P A TG P+ P GP P P L LP Sbjct: 1227 GKG-----------AKGDPGAIGAPGKTG----------PVGPAGPAGKPGPDGLRGLP- 1264 Query: 121 SHSWDSWDFLAFLESVGRT-EPGEAGDR-EKGPQGQPGPRGATGKSGAKGPQSAPGGIGN 178 SVG+ PG G GP G PG G G +GAKG + PG IG Sbjct: 1265 -------------GSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGL 1311 Query: 179 LGPPGE 184 +GPPGE Sbjct: 1312 IGPPGE 1317 Score = 54.7 bits (130), Expect = 7e-08 Identities = 58/184 (31%), Positives = 70/184 (38%), Gaps = 44/184 (23%) Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIP--KGPSGPQGPLGYPGPPGV 59 +GPAGS G G G K K G G P GP GP GP G PGP G+ Sbjct: 1213 RGPAGSPGSEGRQGGKGAKGDPG------------AIGAPGKTGPVGPAGPAGKPGPDGL 1260 Query: 60 KDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLP 119 + P G R + P P+GP P P L Sbjct: 1261 RG--------------------LPGSVGQQG-RPGATGQAGPPGPVGP---PGLPGLRGD 1296 Query: 120 LSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNL 179 + + +G PGE G EKG +G PGP+G+ G+ G G A G IG Sbjct: 1297 AGAKGEK-GHPGLIGLIG--PPGEQG--EKGDRGLPGPQGSPGQKGEMGIPGASGPIGPG 1351 Query: 180 GPPG 183 GPPG Sbjct: 1352 GPPG 1355 Score = 53.9 bits (128), Expect = 1e-07 Identities = 62/201 (30%), Positives = 81/201 (40%), Gaps = 22/201 (10%) Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVK- 60 +G G+ GL G G ++ G I PR G P+G GP+GP G PGPPGV+ Sbjct: 466 RGDTGAQGLPGPPGEDGERGDDGE---IGPRGLPGESG-PRGLLGPKGPPGIPGPPGVRG 521 Query: 61 -DSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPL- 118 D +L Q +P T G+ P A + P GP P P +P Sbjct: 522 MDGPQGPKGSLGPQGEPGPPGQQGTPGTQ-GLPGPQGA-IGPHGEKGPQGKPGLPGMPGS 579 Query: 119 --PLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGI 176 P H E T+ + +GP G PGPRG G G +G + G Sbjct: 580 DGPPGHPGK--------EGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEK 631 Query: 177 GNLGPPGEM--VTGKGVNGQV 195 G G PG + KG G+V Sbjct: 632 GEDGFPGFKGDIGVKGDRGEV 652 Score = 53.5 bits (127), Expect = 2e-07 Identities = 65/204 (31%), Positives = 76/204 (37%), Gaps = 44/204 (21%) Query: 4 GPAGSIGLGDVGAKAQKPG-GGRRDSIVPRTWEETEGIP-----KGPSGPQGPLGYPGPP 57 GP G+IG KPG G S P EG P +GPSGPQGPLGYPGP Sbjct: 554 GPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPR 613 Query: 58 GVKDSKPMICIALALDHHTLYTPQAPSPATA--TGIRQPHSASLVPLS-----PLGPDLI 110 GVK + L H + P G++ VP S P GP Sbjct: 614 GVKGVDGI----RGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGR 669 Query: 111 PRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQ 170 P P P PG G EKG G PG G G+ G KG Sbjct: 670 TGPTGDPGP---------------------PGLMG--EKGKLGVPGLPGYPGRQGPKGSL 706 Query: 171 SAPGGIGNLGPPGEMVTGKGVNGQ 194 PG G G G +G++G+ Sbjct: 707 GFPGFPGASGEKG----ARGLSGK 726 Score = 53.5 bits (127), Expect = 2e-07 Identities = 56/187 (29%), Positives = 69/187 (36%), Gaps = 36/187 (19%) Query: 4 GPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62 GP+G G GDVG G R P + GP GP G +G GPPG K Sbjct: 1055 GPSGEKGETGDVGPMGPPGPPGPRGPAGPNGAD-------GPQGPPGGVGNLGPPGEK-G 1106 Query: 63 KPMICIALALDHHTLYTPQAPSPATATGIR----QPHSASLVPLSPLGPDLIPRPPRLPL 118 +P + + P P G + QP P P GP P P Sbjct: 1107 EPGESGSPGIQGE----PGVKGPRGERGEKGESGQPGEPG--PPGPKGPTGDDGPKGNPG 1160 Query: 119 PLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGN 178 P+ D PG G E GP+GQ G +G G+ G G +PG G Sbjct: 1161 PVGFPGD---------------PGPPG--EGGPRGQDGAKGDRGEDGEPGQPGSPGPTGE 1203 Query: 179 LGPPGEM 185 GPPG + Sbjct: 1204 NGPPGPL 1210 Score = 52.4 bits (124), Expect = 4e-07 Identities = 56/184 (30%), Positives = 66/184 (35%), Gaps = 39/184 (21%) Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKD 61 +GP GS+G G GA +K G PR E P GP G +GP G G G K Sbjct: 700 QGPKGSLGFPGFPGASGEKGARGLSGKSGPRG----ERGPTGPRGQRGPRGATGKSGAKG 755 Query: 62 SKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLS 121 + L PQ P+ G P P P G D +P P Sbjct: 756 TSGGDGPHGPPGERGLPGPQGPN-----GFPGPKG----PPGPPGKDGLPGHPG------ 800 Query: 122 HSWDSWDFLAFLESVGRTEPGEAGDREK-GPQGQPGPRGATGKSGAKGPQSAPGGIGNLG 180 + GE G + K GP G PG G G +G GP G G G Sbjct: 801 ------------------QRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPG 842 Query: 181 PPGE 184 PPGE Sbjct: 843 PPGE 846 Score = 51.2 bits (121), Expect = 8e-07 Identities = 54/188 (28%), Positives = 67/188 (35%), Gaps = 46/188 (24%) Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIP--KGPSGPQGPLGYPGPPGVK 60 GP G G G GA + G R ++ G+P KG G G G PGPPG Sbjct: 422 GPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGED 481 Query: 61 DSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPL 120 + D + P + G+ L P GP IP PP + Sbjct: 482 GERG--------DDGEIGPRGLPGESGPRGL----------LGPKGPPGIPGPPGV---- 519 Query: 121 SHSWDSWDFLAFLESVGRTEPGEAGDREK-GPQGQPGP---RGATGKSGAKGPQSAPGGI 176 R G G + GPQG+PGP +G G G GPQ A G Sbjct: 520 -----------------RGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPH 562 Query: 177 GNLGPPGE 184 G GP G+ Sbjct: 563 GEKGPQGK 570 Score = 50.1 bits (118), Expect = 2e-06 Identities = 56/194 (28%), Positives = 69/194 (35%), Gaps = 43/194 (22%) Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62 GP G G+ G GA + G R P +G+P G +G +G G PGPPG Sbjct: 812 GPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLP-GTAGKEGTKGDPGPPGAPGK 870 Query: 63 KPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPR---------- 112 + L P A G++ P P GP P Sbjct: 871 DGPAGLRGFPGERGL-----PGTAGGPGLKGNEG----PSGPPGPAGSPGERGAAGSGGP 921 Query: 113 --PPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQ 170 PP P P + PG AG EKG G+ GP G TG+ G +GP Sbjct: 922 IGPPGRPGP------------------QGPPGAAG--EKGVPGEKGPIGPTGRDGVQGPV 961 Query: 171 SAPGGIGNLGPPGE 184 PG G G GE Sbjct: 962 GLPGPAGPPGVAGE 975 Score = 49.3 bits (116), Expect = 3e-06 Identities = 59/207 (28%), Positives = 76/207 (36%), Gaps = 50/207 (24%) Query: 3 KGPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPK-----GPSGPQGPLGYPGP 56 +GP GS+G G+ G Q+ G T+G+P GP G +GP G PG Sbjct: 526 QGPKGSLGPQGEPGPPGQQGTPG------------TQGLPGPQGAIGPHGEKGPQGKPGL 573 Query: 57 PGV--KDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPP 114 PG+ D P H P P G + P S PL GP + Sbjct: 574 PGMPGSDGPP--------GH-----PGKEGPPGTKGNQGP-SGPQGPLGYPGPRGVKGVD 619 Query: 115 RLPLPLSHSWDSWD--FLAFLESVG----RTEPGEAGDREK----------GPQGQPGPR 158 + H + + F F +G R E G G R + GP G PGP Sbjct: 620 GIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPP 679 Query: 159 GATGKSGAKGPQSAPGGIGNLGPPGEM 185 G G+ G G PG G GP G + Sbjct: 680 GLMGEKGKLGVPGLPGYPGRQGPKGSL 706 Score = 47.8 bits (112), Expect = 9e-06 Identities = 56/187 (29%), Positives = 68/187 (36%), Gaps = 33/187 (17%) Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62 G +GS G+ G+ G K + G + + E PKGP+G GP G PGP G Sbjct: 1109 GESGSPGIQGEPGVKGPRGERGEKGES-GQPGEPGPPGPKGPTGDDGPKGNPGPVGF--- 1164 Query: 63 KPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLSH 122 P P P G R A G D P P P P Sbjct: 1165 -----------------PGDPGPPGEGGPRGQDGAK----GDRGEDGEPGQPGSPGPTGE 1203 Query: 123 SWDSWDFLAFLESVGRTEPGEAGDRE-KGPQGQPGPRGATGKS---GAKGPQSAPGGIGN 178 + L G PG G + KG +G PG GA GK+ G GP PG G Sbjct: 1204 NGPPGP-LGKRGPAG--SPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGL 1260 Query: 179 LGPPGEM 185 G PG + Sbjct: 1261 RGLPGSV 1267 Score = 47.4 bits (111), Expect = 1e-05 Identities = 57/202 (28%), Positives = 74/202 (36%), Gaps = 40/202 (19%) Query: 3 KGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIP--KGPSGPQGPLGYPGPPGVK 60 +GP G+ G GAK G G P G+P +GP+G GP G PGPPG K Sbjct: 742 RGPRGATGKS--GAKGTSGGDG------PHGPPGERGLPGPQGPNGFPGPKGPPGPPG-K 792 Query: 61 DSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLP--- 117 D P + P G+ P A+ P+G P PP P Sbjct: 793 DGLP----GHPGQRGEVGFQGKTGPPGPPGVVGPQGAA-GETGPMGERGHPGPPGPPGEQ 847 Query: 118 -LPLSHSWDSWDFLAFLESVGRTEPGEAGDREK----------GPQGQPGPRGATGKSGA 166 LP + + + +PG G K G +G PG G G G Sbjct: 848 GLPGTAGKEGT----------KGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGN 897 Query: 167 KGPQSAPGGIGNLGPPGEMVTG 188 +GP PG G+ G G +G Sbjct: 898 EGPSGPPGPAGSPGERGAAGSG 919 Score = 45.4 bits (106), Expect = 4e-05 Identities = 56/209 (26%), Positives = 76/209 (36%), Gaps = 48/209 (22%) Query: 3 KGPAGSIGL-------GDVGAKAQKP-----GGGRRDSIVPRTWEETEGIPKGPS----G 46 +GP G GL G G P GGG + +V + + I + G Sbjct: 321 RGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRG 380 Query: 47 PQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLG 106 P GP+GY G PG L P +P + S L P P G Sbjct: 381 PPGPMGYTGRPG-----------------PLGQPGSPG-------LKGESGDLGPQGPRG 416 Query: 107 PDLIPRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDRE-KGPQGQPGPRGATGKSG 165 P + PP + D + +PG GDR G G PG +G G +G Sbjct: 417 PQGLTGPPGKAGRRGRA--GADGARGMPG----DPGVKGDRGFDGLPGLPGEKGHRGDTG 470 Query: 166 AKGPQSAPGGIGNLGPPGEMVTGKGVNGQ 194 A+G PG G G GE + +G+ G+ Sbjct: 471 AQGLPGPPGEDGERGDDGE-IGPRGLPGE 498 Score = 38.5 bits (88), Expect = 0.005 Identities = 24/56 (42%), Positives = 25/56 (44%), Gaps = 14/56 (25%) Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPG 58 GP G GL G G K K G G PKG G QGP G+PGPPG Sbjct: 1349 GPGGPPGLPGPAGPKGAKGATG-------------PGGPKGEKGVQGPPGHPGPPG 1391 Score = 37.4 bits (85), Expect = 0.012 Identities = 32/81 (39%), Positives = 37/81 (45%), Gaps = 21/81 (25%) Query: 4 GPAGSIGL-GDVGAKAQK-----------PG--GGRRDSIVPRTW-----EETEGIP--K 42 GP G GL GD GAK +K PG G + D +P + GIP Sbjct: 1286 GPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGAS 1345 Query: 43 GPSGPQGPLGYPGPPGVKDSK 63 GP GP GP G PGP G K +K Sbjct: 1346 GPIGPGGPPGLPGPAGPKGAK 1366 Score = 34.7 bits (78), Expect = 0.078 Identities = 17/41 (41%), Positives = 19/41 (46%) Query: 143 EAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGPPG 183 E G +GP G GP G G G +G G G GPPG Sbjct: 285 EPGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPG 325 Score = 30.4 bits (67), Expect = 1.5 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKD 61 +G G GL G G+ QK G + P G+P GP+GP+G G GP G K Sbjct: 1318 QGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLP-GPAGPKGAKGATGPGGPKG 1376 Query: 62 SK 63 K Sbjct: 1377 EK 1378 >gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo sapiens] Length = 1736 Score = 75.9 bits (185), Expect = 3e-14 Identities = 62/191 (32%), Positives = 71/191 (37%), Gaps = 61/191 (31%) Query: 4 GPAGSIGL-------GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGP 56 GPAG G+ G+VG QK G + E P GP GP GP+G PG Sbjct: 1072 GPAGPPGVAGEDGDKGEVGDPGQKGTKGNKG----------EHGPPGPPGPIGPVGQPGA 1121 Query: 57 PGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLV--PLSPLGPDLIPRPP 114 G P A P G + P P+G +P P Sbjct: 1122 AGADGE-----------------PGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPS 1164 Query: 115 RLPLPLSHSWDSWDFLAFLESVGRTEPGEAGD-REKGPQGQPGPRGATGKSGAKGPQSAP 173 E GE GD GP G PGPRG G +GA GPQ P Sbjct: 1165 G------------------------EKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPP 1200 Query: 174 GGIGNLGPPGE 184 GG+GNLGPPGE Sbjct: 1201 GGVGNLGPPGE 1211 Score = 65.9 bits (159), Expect = 3e-11 Identities = 62/198 (31%), Positives = 77/198 (38%), Gaps = 42/198 (21%) Query: 4 GPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDSK 63 GPA S GA A P G + + P E + +GP GP+GP G GPPG++ + Sbjct: 361 GPALSAETAHSGAAAHGPRGLKGEKGEPAVLEPGM-LVEGPPGPEGPAGLIGPPGIQGN- 418 Query: 64 PMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPL--- 120 P P G R P + +P G D P PP L L Sbjct: 419 -------------------PGPVGDPGERGPPGRAGLP----GSDGAPGPPGTSLMLPFR 455 Query: 121 --SHSWDSWDFLAFLESVG-----------RTEPGEAGDREK-GPQGQPGPRGATGKSGA 166 S D +A E+ R PG G + GP GQPG G G+SG Sbjct: 456 FGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGD 515 Query: 167 KGPQSAPGGIGNLGPPGE 184 GPQ G G GPPG+ Sbjct: 516 LGPQGPRGPQGLTGPPGK 533 Score = 62.4 bits (150), Expect = 3e-10 Identities = 61/201 (30%), Positives = 71/201 (35%), Gaps = 50/201 (24%) Query: 4 GPAGSIGL-GDVGAKAQK-----PGGGRRDSIVP-RTWEETEGIP-----------KGPS 45 GP G GL G G + K PG +D R + G+P +GPS Sbjct: 949 GPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPS 1008 Query: 46 GPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSA--SLVPLS 103 GP GP G PG G S I P P P G P+ Sbjct: 1009 GPPGPAGSPGERGAAGSGGPIG-----------PPGRPGPQGPPGAAGEKGVPGEKGPIG 1057 Query: 104 PLGPDLIPRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAG-DREKGPQGQPGPRGATG 162 P G D + P LP P PG AG D +KG G PG +G G Sbjct: 1058 PTGRDGVQGPVGLPGPAG------------------PPGVAGEDGDKGEVGDPGQKGTKG 1099 Query: 163 KSGAKGPQSAPGGIGNLGPPG 183 G GP PG IG +G PG Sbjct: 1100 NKGEHGPPGPPGPIGPVGQPG 1120 Score = 55.1 bits (131), Expect = 6e-08 Identities = 62/186 (33%), Positives = 71/186 (38%), Gaps = 42/186 (22%) Query: 4 GPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEET-EGIPKGPSGPQGPLGYPGPPGVKD 61 GP G G G GAK + G P + T E P GP G +GP G PG G + Sbjct: 1276 GPPGEGGPRGQDGAKGDRGEDGEPGQ--PGSPGPTGENGPPGPLGKRGPAGSPGSEGRQG 1333 Query: 62 SKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLP-LPL 120 K P A TG P+ P GP P P L LP Sbjct: 1334 GKG-----------AKGDPGAIGAPGKTG----------PVGPAGPAGKPGPDGLRGLP- 1371 Query: 121 SHSWDSWDFLAFLESVGRT-EPGEAGDR-EKGPQGQPGPRGATGKSGAKGPQSAPGGIGN 178 SVG+ PG G GP G PG G G +GAKG + PG IG Sbjct: 1372 -------------GSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGL 1418 Query: 179 LGPPGE 184 +GPPGE Sbjct: 1419 IGPPGE 1424 Score = 54.7 bits (130), Expect = 7e-08 Identities = 58/184 (31%), Positives = 70/184 (38%), Gaps = 44/184 (23%) Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIP--KGPSGPQGPLGYPGPPGV 59 +GPAGS G G G K K G G P GP GP GP G PGP G+ Sbjct: 1320 RGPAGSPGSEGRQGGKGAKGDPG------------AIGAPGKTGPVGPAGPAGKPGPDGL 1367 Query: 60 KDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLP 119 + P G R + P P+GP P P L Sbjct: 1368 RG--------------------LPGSVGQQG-RPGATGQAGPPGPVGP---PGLPGLRGD 1403 Query: 120 LSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNL 179 + + +G PGE G EKG +G PGP+G+ G+ G G A G IG Sbjct: 1404 AGAKGEK-GHPGLIGLIG--PPGEQG--EKGDRGLPGPQGSPGQKGEMGIPGASGPIGPG 1458 Query: 180 GPPG 183 GPPG Sbjct: 1459 GPPG 1462 Score = 53.9 bits (128), Expect = 1e-07 Identities = 62/201 (30%), Positives = 81/201 (40%), Gaps = 22/201 (10%) Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVK- 60 +G G+ GL G G ++ G I PR G P+G GP+GP G PGPPGV+ Sbjct: 573 RGDTGAQGLPGPPGEDGERGDDGE---IGPRGLPGESG-PRGLLGPKGPPGIPGPPGVRG 628 Query: 61 -DSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPL- 118 D +L Q +P T G+ P A + P GP P P +P Sbjct: 629 MDGPQGPKGSLGPQGEPGPPGQQGTPGTQ-GLPGPQGA-IGPHGEKGPQGKPGLPGMPGS 686 Query: 119 --PLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGI 176 P H E T+ + +GP G PGPRG G G +G + G Sbjct: 687 DGPPGHPGK--------EGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEK 738 Query: 177 GNLGPPGEM--VTGKGVNGQV 195 G G PG + KG G+V Sbjct: 739 GEDGFPGFKGDIGVKGDRGEV 759 Score = 53.5 bits (127), Expect = 2e-07 Identities = 65/204 (31%), Positives = 76/204 (37%), Gaps = 44/204 (21%) Query: 4 GPAGSIGLGDVGAKAQKPG-GGRRDSIVPRTWEETEGIP-----KGPSGPQGPLGYPGPP 57 GP G+IG KPG G S P EG P +GPSGPQGPLGYPGP Sbjct: 661 GPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPR 720 Query: 58 GVKDSKPMICIALALDHHTLYTPQAPSPATA--TGIRQPHSASLVPLS-----PLGPDLI 110 GVK + L H + P G++ VP S P GP Sbjct: 721 GVKGVDGI----RGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGR 776 Query: 111 PRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQ 170 P P P PG G EKG G PG G G+ G KG Sbjct: 777 TGPTGDPGP---------------------PGLMG--EKGKLGVPGLPGYPGRQGPKGSL 813 Query: 171 SAPGGIGNLGPPGEMVTGKGVNGQ 194 PG G G G +G++G+ Sbjct: 814 GFPGFPGASGEKG----ARGLSGK 833 Score = 53.5 bits (127), Expect = 2e-07 Identities = 56/187 (29%), Positives = 69/187 (36%), Gaps = 36/187 (19%) Query: 4 GPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62 GP+G G GDVG G R P + GP GP G +G GPPG K Sbjct: 1162 GPSGEKGETGDVGPMGPPGPPGPRGPAGPNGAD-------GPQGPPGGVGNLGPPGEK-G 1213 Query: 63 KPMICIALALDHHTLYTPQAPSPATATGIR----QPHSASLVPLSPLGPDLIPRPPRLPL 118 +P + + P P G + QP P P GP P P Sbjct: 1214 EPGESGSPGIQGE----PGVKGPRGERGEKGESGQPGEPG--PPGPKGPTGDDGPKGNPG 1267 Query: 119 PLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGN 178 P+ D PG G E GP+GQ G +G G+ G G +PG G Sbjct: 1268 PVGFPGD---------------PGPPG--EGGPRGQDGAKGDRGEDGEPGQPGSPGPTGE 1310 Query: 179 LGPPGEM 185 GPPG + Sbjct: 1311 NGPPGPL 1317 Score = 52.4 bits (124), Expect = 4e-07 Identities = 56/184 (30%), Positives = 66/184 (35%), Gaps = 39/184 (21%) Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKD 61 +GP GS+G G GA +K G PR E P GP G +GP G G G K Sbjct: 807 QGPKGSLGFPGFPGASGEKGARGLSGKSGPRG----ERGPTGPRGQRGPRGATGKSGAKG 862 Query: 62 SKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLS 121 + L PQ P+ G P P P G D +P P Sbjct: 863 TSGGDGPHGPPGERGLPGPQGPN-----GFPGPKG----PPGPPGKDGLPGHPG------ 907 Query: 122 HSWDSWDFLAFLESVGRTEPGEAGDREK-GPQGQPGPRGATGKSGAKGPQSAPGGIGNLG 180 + GE G + K GP G PG G G +G GP G G G Sbjct: 908 ------------------QRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPG 949 Query: 181 PPGE 184 PPGE Sbjct: 950 PPGE 953 Score = 51.2 bits (121), Expect = 8e-07 Identities = 54/188 (28%), Positives = 67/188 (35%), Gaps = 46/188 (24%) Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIP--KGPSGPQGPLGYPGPPGVK 60 GP G G G GA + G R ++ G+P KG G G G PGPPG Sbjct: 529 GPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGED 588 Query: 61 DSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPL 120 + D + P + G+ L P GP IP PP + Sbjct: 589 GERG--------DDGEIGPRGLPGESGPRGL----------LGPKGPPGIPGPPGV---- 626 Query: 121 SHSWDSWDFLAFLESVGRTEPGEAGDREK-GPQGQPGP---RGATGKSGAKGPQSAPGGI 176 R G G + GPQG+PGP +G G G GPQ A G Sbjct: 627 -----------------RGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPH 669 Query: 177 GNLGPPGE 184 G GP G+ Sbjct: 670 GEKGPQGK 677 Score = 50.1 bits (118), Expect = 2e-06 Identities = 56/194 (28%), Positives = 69/194 (35%), Gaps = 43/194 (22%) Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62 GP G G+ G GA + G R P +G+P G +G +G G PGPPG Sbjct: 919 GPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLP-GTAGKEGTKGDPGPPGAPGK 977 Query: 63 KPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPR---------- 112 + L P A G++ P P GP P Sbjct: 978 DGPAGLRGFPGERGL-----PGTAGGPGLKGNEG----PSGPPGPAGSPGERGAAGSGGP 1028 Query: 113 --PPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQ 170 PP P P + PG AG EKG G+ GP G TG+ G +GP Sbjct: 1029 IGPPGRPGP------------------QGPPGAAG--EKGVPGEKGPIGPTGRDGVQGPV 1068 Query: 171 SAPGGIGNLGPPGE 184 PG G G GE Sbjct: 1069 GLPGPAGPPGVAGE 1082 Score = 49.3 bits (116), Expect = 3e-06 Identities = 59/207 (28%), Positives = 76/207 (36%), Gaps = 50/207 (24%) Query: 3 KGPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPK-----GPSGPQGPLGYPGP 56 +GP GS+G G+ G Q+ G T+G+P GP G +GP G PG Sbjct: 633 QGPKGSLGPQGEPGPPGQQGTPG------------TQGLPGPQGAIGPHGEKGPQGKPGL 680 Query: 57 PGV--KDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPP 114 PG+ D P H P P G + P S PL GP + Sbjct: 681 PGMPGSDGPP--------GH-----PGKEGPPGTKGNQGP-SGPQGPLGYPGPRGVKGVD 726 Query: 115 RLPLPLSHSWDSWD--FLAFLESVG----RTEPGEAGDREK----------GPQGQPGPR 158 + H + + F F +G R E G G R + GP G PGP Sbjct: 727 GIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPP 786 Query: 159 GATGKSGAKGPQSAPGGIGNLGPPGEM 185 G G+ G G PG G GP G + Sbjct: 787 GLMGEKGKLGVPGLPGYPGRQGPKGSL 813 Score = 47.8 bits (112), Expect = 9e-06 Identities = 56/187 (29%), Positives = 68/187 (36%), Gaps = 33/187 (17%) Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62 G +GS G+ G+ G K + G + + E PKGP+G GP G PGP G Sbjct: 1216 GESGSPGIQGEPGVKGPRGERGEKGES-GQPGEPGPPGPKGPTGDDGPKGNPGPVGF--- 1271 Query: 63 KPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLSH 122 P P P G R A G D P P P P Sbjct: 1272 -----------------PGDPGPPGEGGPRGQDGAK----GDRGEDGEPGQPGSPGPTGE 1310 Query: 123 SWDSWDFLAFLESVGRTEPGEAGDRE-KGPQGQPGPRGATGKS---GAKGPQSAPGGIGN 178 + L G PG G + KG +G PG GA GK+ G GP PG G Sbjct: 1311 NGPPGP-LGKRGPAG--SPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGL 1367 Query: 179 LGPPGEM 185 G PG + Sbjct: 1368 RGLPGSV 1374 Score = 47.4 bits (111), Expect = 1e-05 Identities = 57/202 (28%), Positives = 74/202 (36%), Gaps = 40/202 (19%) Query: 3 KGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIP--KGPSGPQGPLGYPGPPGVK 60 +GP G+ G GAK G G P G+P +GP+G GP G PGPPG K Sbjct: 849 RGPRGATGKS--GAKGTSGGDG------PHGPPGERGLPGPQGPNGFPGPKGPPGPPG-K 899 Query: 61 DSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLP--- 117 D P + P G+ P A+ P+G P PP P Sbjct: 900 DGLP----GHPGQRGEVGFQGKTGPPGPPGVVGPQGAA-GETGPMGERGHPGPPGPPGEQ 954 Query: 118 -LPLSHSWDSWDFLAFLESVGRTEPGEAGDREK----------GPQGQPGPRGATGKSGA 166 LP + + + +PG G K G +G PG G G G Sbjct: 955 GLPGTAGKEGT----------KGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGN 1004 Query: 167 KGPQSAPGGIGNLGPPGEMVTG 188 +GP PG G+ G G +G Sbjct: 1005 EGPSGPPGPAGSPGERGAAGSG 1026 Score = 45.4 bits (106), Expect = 4e-05 Identities = 56/209 (26%), Positives = 76/209 (36%), Gaps = 48/209 (22%) Query: 3 KGPAGSIGL-------GDVGAKAQKP-----GGGRRDSIVPRTWEETEGIPKGPS----G 46 +GP G GL G G P GGG + +V + + I + G Sbjct: 428 RGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRG 487 Query: 47 PQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLG 106 P GP+GY G PG L P +P + S L P P G Sbjct: 488 PPGPMGYTGRPG-----------------PLGQPGSPG-------LKGESGDLGPQGPRG 523 Query: 107 PDLIPRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDRE-KGPQGQPGPRGATGKSG 165 P + PP + D + +PG GDR G G PG +G G +G Sbjct: 524 PQGLTGPPGKAGRRGRA--GADGARGMPG----DPGVKGDRGFDGLPGLPGEKGHRGDTG 577 Query: 166 AKGPQSAPGGIGNLGPPGEMVTGKGVNGQ 194 A+G PG G G GE + +G+ G+ Sbjct: 578 AQGLPGPPGEDGERGDDGE-IGPRGLPGE 605 Score = 38.5 bits (88), Expect = 0.005 Identities = 24/56 (42%), Positives = 25/56 (44%), Gaps = 14/56 (25%) Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPG 58 GP G GL G G K K G G PKG G QGP G+PGPPG Sbjct: 1456 GPGGPPGLPGPAGPKGAKGATG-------------PGGPKGEKGVQGPPGHPGPPG 1498 Score = 37.4 bits (85), Expect = 0.012 Identities = 32/81 (39%), Positives = 37/81 (45%), Gaps = 21/81 (25%) Query: 4 GPAGSIGL-GDVGAKAQK-----------PG--GGRRDSIVPRTW-----EETEGIP--K 42 GP G GL GD GAK +K PG G + D +P + GIP Sbjct: 1393 GPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGAS 1452 Query: 43 GPSGPQGPLGYPGPPGVKDSK 63 GP GP GP G PGP G K +K Sbjct: 1453 GPIGPGGPPGLPGPAGPKGAK 1473 Score = 30.4 bits (67), Expect = 1.5 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKD 61 +G G GL G G+ QK G + P G+P GP+GP+G G GP G K Sbjct: 1425 QGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLP-GPAGPKGAKGATGPGGPKG 1483 Query: 62 SK 63 K Sbjct: 1484 EK 1485 >gi|239753932 PREDICTED: similar to Cytochrome c oxidase subunit 2 [Homo sapiens] Length = 64 Score = 72.0 bits (175), Expect = 4e-13 Identities = 36/57 (63%), Positives = 45/57 (78%), Gaps = 1/57 (1%) Query: 190 GVNGQVFQLRDEI-TFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245 G+ F + +E+ TFHDH L+I+FLIS LVLY+ISLI T KLT+ STIDAQEI+TV Sbjct: 8 GLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQEIQTV 64 >gi|239748474 PREDICTED: similar to Cytochrome c oxidase subunit 2 [Homo sapiens] Length = 64 Score = 72.0 bits (175), Expect = 4e-13 Identities = 36/57 (63%), Positives = 45/57 (78%), Gaps = 1/57 (1%) Query: 190 GVNGQVFQLRDEI-TFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245 G+ F + +E+ TFHDH L+I+FLIS LVLY+ISLI T KLT+ STIDAQEI+TV Sbjct: 8 GLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQEIQTV 64 >gi|239742438 PREDICTED: hypothetical protein XP_002342515 [Homo sapiens] Length = 64 Score = 72.0 bits (175), Expect = 4e-13 Identities = 36/57 (63%), Positives = 45/57 (78%), Gaps = 1/57 (1%) Query: 190 GVNGQVFQLRDEI-TFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245 G+ F + +E+ TFHDH L+I+FLIS LVLY+ISLI T KLT+ STIDAQEI+TV Sbjct: 8 GLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQEIQTV 64 >gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] Length = 1838 Score = 71.2 bits (173), Expect = 7e-13 Identities = 64/194 (32%), Positives = 85/194 (43%), Gaps = 19/194 (9%) Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62 GPAG +G G+ G K + G++ S ++ E P GP+GPQGP+G PGP G D Sbjct: 1144 GPAGPVGPPGEDGDKGEIGEPGQKGS----KGDKGEQGPPGPTGPQGPIGQPGPSGA-DG 1198 Query: 63 KPMICIALAL-----DHHTLYTPQAPSPATATGIRQP-----HSASLVPLSPLGPDLIPR 112 +P L D P P P G+ P + + + P GP PR Sbjct: 1199 EPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPG-PR 1257 Query: 113 PPRLPLPLSHSWDSWDFLAFLESVG-RTEPGEAGDRE-KGPQGQPGPRGATGKSGAKGPQ 170 P + +VG + EPGEAG+ G G PGP+G G+ G GP Sbjct: 1258 GPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPS 1317 Query: 171 SAPGGIGNLGPPGE 184 A G G GPPG+ Sbjct: 1318 GAAGPPGPKGPPGD 1331 Score = 63.5 bits (153), Expect = 2e-10 Identities = 70/203 (34%), Positives = 79/203 (38%), Gaps = 23/203 (11%) Query: 4 GPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDSK 63 GPAG G G K G+ S P T E P G GP GP G G G K +K Sbjct: 1354 GPAGQDG--PPGDKGDDGEPGQTGSPGP-TGEPGPSGPPGKRGPPGPAGPEGRQGEKGAK 1410 Query: 64 PMICIALALDHHTLYTPQA----PSPATATGIRQPHSASLVPLSPLGPDLIPRP---PRL 116 + PQ P P GI P +P SP GPD P P P L Sbjct: 1411 GEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSP-GPDGPPGPMGPPGL 1469 Query: 117 PLPLSHSWDSWD-----FLAFLESVGRTEPGEAGDRE-KGPQGQPGPRGATGKSGAKGPQ 170 P S + + + G E GE GDR GPQG GP+G G +G GP Sbjct: 1470 PGLKGDSGPKGEKGHPGLIGLIGPPG--EQGEKGDRGLPGPQGSSGPKGEQGITGPSGPI 1527 Query: 171 SAPGGIGNLGPPGEMVTGKGVNG 193 PG G GPPG KG G Sbjct: 1528 GPPGPPGLPGPPGP----KGAKG 1546 Score = 62.8 bits (151), Expect = 3e-10 Identities = 62/195 (31%), Positives = 76/195 (38%), Gaps = 45/195 (23%) Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIP--------KGPSGPQGPLGYP 54 GP G G+ G G + G R P +G+P KG GP G G Sbjct: 991 GPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKD 1050 Query: 55 GPPGVKD-----SKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDL 109 GPPG++ P AL L + P P PA + G R P A+ GP Sbjct: 1051 GPPGLRGFPGDRGLPGPVGALGLKGNE-GPPGPPGPAGSPGERGPAGAA-------GPIG 1102 Query: 110 IPRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGP 169 IP P P PG AG EKG G+ GP+G G+ G +GP Sbjct: 1103 IPGRPGPQGP---------------------PGPAG--EKGAPGEKGPQGPAGRDGLQGP 1139 Query: 170 QSAPGGIGNLGPPGE 184 PG G +GPPGE Sbjct: 1140 VGLPGPAGPVGPPGE 1154 Score = 60.8 bits (146), Expect = 1e-09 Identities = 57/183 (31%), Positives = 64/183 (34%), Gaps = 55/183 (30%) Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKD 61 +GP GSIG G GA +K G G PR G P+G GP+G G PGP G Sbjct: 879 QGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTG-PRGERGPRGITGKPGPKG--- 934 Query: 62 SKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLS 121 PA G R P+ P GP P P P P Sbjct: 935 -----------------NSGGDGPAGPPGERGPNG-------PQGPTGFPGPKGPPGP-- 968 Query: 122 HSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGP 181 PG+ G G PG RG TG G GP PG +G GP Sbjct: 969 -------------------PGK-----DGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGP 1004 Query: 182 PGE 184 GE Sbjct: 1005 TGE 1007 Score = 58.2 bits (139), Expect = 7e-09 Identities = 59/195 (30%), Positives = 77/195 (39%), Gaps = 48/195 (24%) Query: 3 KGPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVK- 60 +GP G G +G GA + G R P + G P GP GP GP+G PG PG+K Sbjct: 1416 EGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSP-GPDGPPGPMGPPGLPGLKG 1474 Query: 61 DSKP---------MICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIP 111 DS P + I + P P ++G + + P P+GP P Sbjct: 1475 DSGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSSGPKGEQGIT-GPSGPIGP---P 1530 Query: 112 RPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQS 171 PP LP P PG KG +G GP G G++G GP Sbjct: 1531 GPPGLPGP---------------------PGP-----KGAKGSSGPTGPKGEAGHPGPPG 1564 Query: 172 APGGIGNLGPPGEMV 186 P GPPGE++ Sbjct: 1565 PP------GPPGEVI 1573 Score = 57.0 bits (136), Expect = 1e-08 Identities = 71/233 (30%), Positives = 84/233 (36%), Gaps = 56/233 (24%) Query: 4 GPAGSIGLGDVGAKAQKPG-GGRRDSIVPRTWEETEGIP-----KGPSGPQGPLGYP--- 54 GP G+IG KPG G + P EG P +GP GPQGP+GYP Sbjct: 733 GPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGPIGYPGPR 792 Query: 55 ---------------------GPPGVKDSKPMICIALALDHHTLYTP-----QAPSPATA 88 G PG K + + D + P P Sbjct: 793 GVKGADGIRGLKGTKGEKGEDGFPGFKGD-----MGIKGDRGEIGPPGPRGEDGPEGPKG 847 Query: 89 TGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLSHSWDSWDFLAFL----ESVGRTEPGEA 144 G L P G +P P P S F F E GR PG+ Sbjct: 848 RGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPK-GSIGFPGFPGANGEKGGRGTPGKP 906 Query: 145 GDREK----GPQGQPGPRGATGKSGAKGPQSAPGGIGNLGPPGEMVTGKGVNG 193 G R + GP+G+ GPRG TGK G KG GG G GPPGE +G NG Sbjct: 907 GPRGQRGPTGPRGERGPRGITGKPGPKGNS---GGDGPAGPPGE----RGPNG 952 Score = 56.6 bits (135), Expect = 2e-08 Identities = 62/187 (33%), Positives = 70/187 (37%), Gaps = 27/187 (14%) Query: 3 KGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62 +GPAG +GL PG G +G P G GPQGP G GPPG Sbjct: 558 RGPAGPMGLTGRPGPVGPPGSGG-----------LKGEP-GDVGPQGPRGVQGPPG-PAG 604 Query: 63 KPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLSH 122 KP D P G R + +P G P P P P Sbjct: 605 KPGRRGRAGSDG----ARGMPGQTGPKGDRGFDGLAGLP-GEKGHRGDPGPSGPPGPPGD 659 Query: 123 SWDSWDFLAFLESVG-RTEPGEAGDR----EKGPQGQPGPRGATGKSGAKGPQSAPGGIG 177 + D VG R PGE G R KGP G PGP G TG G GP+ G G Sbjct: 660 DGERGDD----GEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQG 715 Query: 178 NLGPPGE 184 GPPG+ Sbjct: 716 EPGPPGQ 722 Score = 55.8 bits (133), Expect = 3e-08 Identities = 64/196 (32%), Positives = 79/196 (40%), Gaps = 36/196 (18%) Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVK-- 60 GP+G G GD G + G + PR G P+G GP+GP G PGPPGV Sbjct: 649 GPSGPPGPPGDDGER------GDDGEVGPRGLPGEPG-PRGLLGPKGPPGPPGPPGVTGM 701 Query: 61 DSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVP--LSPLGPDLIPRPPRLPL 118 D +P + Q +P A G+ P A P PLG +P P Sbjct: 702 DGQPGPKGNVGPQGEPGPPGQQGNPG-AQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADG 760 Query: 119 PLSHSWDSWDFLAFLESVGRTEPGEAGDR-EKGPQGQPGPRGATGKSGAKGPQSAPGGIG 177 P H PG+ G EKG QG PGP+G G G +G + A G G Sbjct: 761 PPGH------------------PGKEGPPGEKGGQGPPGPQGPIGYPGPRGVKGADGIRG 802 Query: 178 NLGPPGEMVTGKGVNG 193 G GE KG +G Sbjct: 803 LKGTKGE----KGEDG 814 Score = 52.4 bits (124), Expect = 4e-07 Identities = 54/185 (29%), Positives = 62/185 (33%), Gaps = 28/185 (15%) Query: 4 GPAGSIGL----GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGV 59 GP G +GL G G K + G+ P G P G GPQGP G G PG Sbjct: 1222 GPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAP-GADGPQGPPGGIGNPGA 1280 Query: 60 KDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLP 119 K A P P S + P P GP P P P Sbjct: 1281 VGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGP 1340 Query: 120 LSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNL 179 + PG+ G P G+PGP G G G KG PG G+ Sbjct: 1341 VGF------------------PGDPG-----PPGEPGPAGQDGPPGDKGDDGEPGQTGSP 1377 Query: 180 GPPGE 184 GP GE Sbjct: 1378 GPTGE 1382 Score = 48.1 bits (113), Expect = 7e-06 Identities = 45/146 (30%), Positives = 56/146 (38%), Gaps = 22/146 (15%) Query: 42 KGPSGPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVP 101 +GP GP+GP G PGPPG + D P P A G+ P L Sbjct: 468 EGPPGPEGPAGLPGPPGTMGPTGQVG-----DPGERGPPGRPGLPGADGLPGPPGTML-- 520 Query: 102 LSPL----GPDLIPRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGP 157 + P G D + P + S + A L+ G AG G G+PGP Sbjct: 521 MLPFRFGGGGDAGSKGPMVSAQESQA------QAILQQARLALRGPAG--PMGLTGRPGP 572 Query: 158 RGATGKSGAKGPQSAPGGIGNLGPPG 183 G G G KG PG +G GP G Sbjct: 573 VGPPGSGGLKG---EPGDVGPQGPRG 595 Score = 48.1 bits (113), Expect = 7e-06 Identities = 54/195 (27%), Positives = 68/195 (34%), Gaps = 57/195 (29%) Query: 3 KGPAGSIG----LGDVGAKAQKPGGGRRDS---IVPRTWEETEGIP-----KGPSGPQGP 50 KG G IG G+ G + K GG + P + G+P G GP+G Sbjct: 825 KGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGS 884 Query: 51 LGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLI 110 +G+PG PG K TP P P G P G Sbjct: 885 IGFPGFPGANGEK-----------GGRGTPGKPGPRGQRG-------------PTG---- 916 Query: 111 PRPPRLPLPLSHSWDSWDFLAFLESVGRTEP--GEAGDREKGPQGQPGPRGATGKSGAKG 168 PR R P ++ G+ P GD GP G+ GP G G +G G Sbjct: 917 PRGERGPRGIT---------------GKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPG 961 Query: 169 PQSAPGGIGNLGPPG 183 P+ PG G G PG Sbjct: 962 PKGPPGPPGKDGLPG 976 Score = 48.1 bits (113), Expect = 7e-06 Identities = 60/198 (30%), Positives = 70/198 (35%), Gaps = 49/198 (24%) Query: 4 GPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEETEGIP--KGPSGP------QGPLGYP 54 GPAGS G G GA GR P +G P KGP GP QGP+G P Sbjct: 1084 GPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLP 1143 Query: 55 GPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPP 114 GP G P+ D + P G + P P P GP P P Sbjct: 1144 GPAG-----PVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPG----PTGPQGPIGQPGP- 1193 Query: 115 RLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDR-------EKGPQGQPGPRGATGKSGAK 167 S EPG G + ++GP+G PGP G G G Sbjct: 1194 --------------------SGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLP 1233 Query: 168 GPQSAPGGIGNLGPPGEM 185 GP PG G G G+M Sbjct: 1234 GP---PGEKGETGDVGQM 1248 Score = 43.5 bits (101), Expect = 2e-04 Identities = 53/191 (27%), Positives = 70/191 (36%), Gaps = 37/191 (19%) Query: 4 GPAGSI--------GLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPG 55 GP G++ G GD G+K P ++S ++ +GP+GP G G PG Sbjct: 514 GPPGTMLMLPFRFGGGGDAGSKG--PMVSAQESQAQAILQQARLALRGPAGPMGLTGRPG 571 Query: 56 PPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVP--LSPLGPDLIPRP 113 P G S + P P G++ P + P G D Sbjct: 572 PVGPPGSGGL-----------KGEPGDVGPQGPRGVQGPPGPAGKPGRRGRAGSDGARGM 620 Query: 114 PRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAP 173 P P +D LA L PGE KG +G PGP G G G G + Sbjct: 621 PGQTGPKGDR--GFDGLAGL-------PGE-----KGHRGDPGPSGPPGPPGDDGERGDD 666 Query: 174 GGIGNLGPPGE 184 G +G G PGE Sbjct: 667 GEVGPRGLPGE 677 Score = 40.4 bits (93), Expect = 0.001 Identities = 54/202 (26%), Positives = 71/202 (35%), Gaps = 43/202 (21%) Query: 10 GLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSG------------------PQGPL 51 G+G G + +K G I P E P+GP+G +GP Sbjct: 444 GIG--GPRGEKGQKGEPAIIEPGMLIEGPPGPEGPAGLPGPPGTMGPTGQVGDPGERGPP 501 Query: 52 GYPGPPGVKDSKP-----MICIALALDHHTLYTPQAPSPATATGIRQP--HSASLVPLSP 104 G PG PG D P M+ + + P + Q A L P Sbjct: 502 GRPGLPGA-DGLPGPPGTMLMLPFRFGGGGDAGSKGPMVSAQESQAQAILQQARLALRGP 560 Query: 105 LGP-DLIPRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDR-EKGPQGQPGPRGATG 162 GP L RP + P S + EPG+ G + +G QG PGP G G Sbjct: 561 AGPMGLTGRPGPVGPPGSGGL-------------KGEPGDVGPQGPRGVQGPPGPAGKPG 607 Query: 163 KSGAKGPQSAPGGIGNLGPPGE 184 + G G A G G GP G+ Sbjct: 608 RRGRAGSDGARGMPGQTGPKGD 629 Score = 35.8 bits (81), Expect = 0.035 Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 3/40 (7%) Query: 150 GPQGQPGPRGATGKSGAKGPQSAPG---GIGNLGPPGEMV 186 GP G GP G G G +GP PG G GPPG M+ Sbjct: 481 GPPGTMGPTGQVGDPGERGPPGRPGLPGADGLPGPPGTML 520 Score = 31.6 bits (70), Expect = 0.66 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 14/65 (21%) Query: 141 PGEAGDREKGPQGQPGPRGATGKSG----------AKGPQSAPGGIGNLGPPGEMVTGKG 190 PG +++ +G GPRG G+ G +GP G G GPPG M G Sbjct: 432 PGMPANQDTIYEGIGGPRGEKGQKGEPAIIEPGMLIEGPPGPEGPAGLPGPPGTM----G 487 Query: 191 VNGQV 195 GQV Sbjct: 488 PTGQV 492 >gi|239753397 PREDICTED: similar to Cytochrome c oxidase subunit 2 [Homo sapiens] Length = 64 Score = 69.7 bits (169), Expect = 2e-12 Identities = 34/48 (70%), Positives = 41/48 (85%) Query: 198 LRDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245 + + +TFHDH L+I+FLISSLVL +ISLILT KLT+ TIDAQEIETV Sbjct: 17 IEELLTFHDHALIIIFLISSLVLDIISLILTTKLTHTGTIDAQEIETV 64 >gi|239752847 PREDICTED: hypothetical protein XP_002345402 [Homo sapiens] Length = 53 Score = 69.7 bits (169), Expect = 2e-12 Identities = 35/47 (74%), Positives = 40/47 (85%) Query: 199 RDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245 R +TFHDH L+I+FLISSLVLY+ISLILT KLT+ ST AQEIETV Sbjct: 7 RKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53 >gi|239747968 PREDICTED: hypothetical protein XP_002346519 [Homo sapiens] Length = 64 Score = 69.7 bits (169), Expect = 2e-12 Identities = 34/48 (70%), Positives = 41/48 (85%) Query: 198 LRDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245 + + +TFHDH L+I+FLISSLVL +ISLILT KLT+ TIDAQEIETV Sbjct: 17 IEELLTFHDHALIIIFLISSLVLDIISLILTTKLTHTGTIDAQEIETV 64 >gi|239747402 PREDICTED: hypothetical protein XP_002346644 [Homo sapiens] Length = 53 Score = 69.7 bits (169), Expect = 2e-12 Identities = 35/47 (74%), Positives = 40/47 (85%) Query: 199 RDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245 R +TFHDH L+I+FLISSLVLY+ISLILT KLT+ ST AQEIETV Sbjct: 7 RKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53 >gi|239741863 PREDICTED: hypothetical protein XP_002342327 [Homo sapiens] Length = 64 Score = 69.7 bits (169), Expect = 2e-12 Identities = 34/48 (70%), Positives = 41/48 (85%) Query: 198 LRDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245 + + +TFHDH L+I+FLISSLVL +ISLILT KLT+ TIDAQEIETV Sbjct: 17 IEELLTFHDHALIIIFLISSLVLDIISLILTTKLTHTGTIDAQEIETV 64 >gi|239741228 PREDICTED: hypothetical protein XP_002342139 [Homo sapiens] Length = 53 Score = 69.7 bits (169), Expect = 2e-12 Identities = 35/47 (74%), Positives = 40/47 (85%) Query: 199 RDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245 R +TFHDH L+I+FLISSLVLY+ISLILT KLT+ ST AQEIETV Sbjct: 7 RKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53 >gi|239755520 PREDICTED: similar to Cytochrome c oxidase subunit 2 [Homo sapiens] Length = 64 Score = 68.9 bits (167), Expect = 4e-12 Identities = 34/48 (70%), Positives = 41/48 (85%) Query: 198 LRDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245 + + +TFH H L+I+ LISSLVLYVISLILT KLT+ STIDAQEI+TV Sbjct: 17 IEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQEIKTV 64 >gi|239750010 PREDICTED: hypothetical protein XP_002347252 [Homo sapiens] Length = 64 Score = 68.9 bits (167), Expect = 4e-12 Identities = 34/48 (70%), Positives = 41/48 (85%) Query: 198 LRDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245 + + +TFH H L+I+ LISSLVLYVISLILT KLT+ STIDAQEI+TV Sbjct: 17 IEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQEIKTV 64 >gi|239744323 PREDICTED: hypothetical protein XP_002343117 [Homo sapiens] Length = 64 Score = 68.9 bits (167), Expect = 4e-12 Identities = 34/48 (70%), Positives = 41/48 (85%) Query: 198 LRDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245 + + +TFH H L+I+ LISSLVLYVISLILT KLT+ STIDAQEI+TV Sbjct: 17 IEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQEIKTV 64 >gi|239755319 PREDICTED: similar to cytochrome c oxidase subunit II [Homo sapiens] Length = 64 Score = 67.8 bits (164), Expect = 8e-12 Identities = 32/48 (66%), Positives = 40/48 (83%) Query: 198 LRDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245 + + + FHDH L+I+FLISSLVLY+ISLILT KL + ST DAQE+ETV Sbjct: 17 IEELLHFHDHTLIIIFLISSLVLYIISLILTTKLMHTSTTDAQEVETV 64 >gi|239749812 PREDICTED: hypothetical protein XP_002347169 [Homo sapiens] Length = 64 Score = 67.8 bits (164), Expect = 8e-12 Identities = 32/48 (66%), Positives = 40/48 (83%) Query: 198 LRDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245 + + + FHDH L+I+FLISSLVLY+ISLILT KL + ST DAQE+ETV Sbjct: 17 IEELLHFHDHTLIIIFLISSLVLYIISLILTTKLMHTSTTDAQEVETV 64 >gi|239744102 PREDICTED: hypothetical protein XP_002343062 [Homo sapiens] Length = 64 Score = 67.8 bits (164), Expect = 8e-12 Identities = 32/48 (66%), Positives = 40/48 (83%) Query: 198 LRDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245 + + + FHDH L+I+FLISSLVLY+ISLILT KL + ST DAQE+ETV Sbjct: 17 IEELLHFHDHTLIIIFLISSLVLYIISLILTTKLMHTSTTDAQEVETV 64 >gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo sapiens] Length = 1487 Score = 67.0 bits (162), Expect = 1e-11 Identities = 69/186 (37%), Positives = 78/186 (41%), Gaps = 42/186 (22%) Query: 4 GPAGSIGL-GDVGAKAQK-PGGGR--RDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGV 59 GPAG G G GAK + P G R + PR T G P GP+G G G G PG Sbjct: 360 GPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSP-GPAGASGNPGTDGIPGA 418 Query: 60 KDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLP 119 K S IA A P P P G P A+ PLGP P + Sbjct: 419 KGSAGAPGIAGA--------PGFPGPRGPPG---PQGAT----GPLGPKGQTGEPGIA-- 461 Query: 120 LSHSWDSWDFLAFLESVG-RTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGN 178 F G + EPG AG PQG PGP G GK GA+G PGG+G Sbjct: 462 -----------GFKGEQGPKGEPGPAG-----PQGAPGPAGEEGKRGARGE---PGGVGP 502 Query: 179 LGPPGE 184 +GPPGE Sbjct: 503 IGPPGE 508 Score = 66.2 bits (160), Expect = 2e-11 Identities = 59/182 (32%), Positives = 73/182 (40%), Gaps = 31/182 (17%) Query: 3 KGPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKD 61 KGP G G G+ G + + G + + PR + G P P GP GP G PGPPG+ Sbjct: 119 KGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNP-GPPGPPGPPGPPGLGG 177 Query: 62 SKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLS 121 + +A D + G+ Q P+ P+GP P P P P Sbjct: 178 NFAAQ-MAGGFDEK--------AGGAQLGVMQG------PMGPMGPRGPPGPAGAPGPQG 222 Query: 122 HSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGP 181 F + G EPGE G GP G GP G GK G G PG G GP Sbjct: 223 ----------FQGNPG--EPGEPG--VSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGP 268 Query: 182 PG 183 PG Sbjct: 269 PG 270 Score = 59.7 bits (143), Expect = 2e-09 Identities = 58/172 (33%), Positives = 68/172 (39%), Gaps = 35/172 (20%) Query: 12 GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDSKPMICIALA 71 G G K QK G IV PKGP GPQGP G GP G + K Sbjct: 98 GQPGPKGQKGEPGDIKDIVG---------PKGPPGPQGPAGEQGPRGDRGDKG------- 141 Query: 72 LDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLSHSWDSWDFLA 131 AP P G +P + P +P GP P PP P L ++ + Sbjct: 142 -------EKGAPGPRGRDG--EPGT----PGNP-GPPGPPGPPGPP-GLGGNFAAQMAGG 186 Query: 132 FLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGPPG 183 F E G + G +GP G GPRG G +GA GPQ G G G PG Sbjct: 187 FDEKAGGAQLGVM----QGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPG 234 Score = 58.2 bits (139), Expect = 7e-09 Identities = 55/188 (29%), Positives = 70/188 (37%), Gaps = 47/188 (25%) Query: 2 AKGPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVK 60 A GP GS G G G + + G + + P GI +GP GP+G G G PG + Sbjct: 1069 APGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGI-QGPQGPRGDKGEAGEPGER 1127 Query: 61 DSKPMICIALALDHHTLYT-----PQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPR 115 L H +T P P P+ G P P P GP Sbjct: 1128 ----------GLKGHRGFTGLQGLPGPPGPSGDQGASGPAG----PSGPRGP-------- 1165 Query: 116 LPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGG 175 P P+ S + + GP G PGPRG +G++G GP PG Sbjct: 1166 -PGPVGPSGK-----------------DGANGIPGPIGPPGPRGRSGETGPAGPPGNPGP 1207 Query: 176 IGNLGPPG 183 G GPPG Sbjct: 1208 PGPPGPPG 1215 Score = 57.8 bits (138), Expect = 9e-09 Identities = 59/186 (31%), Positives = 69/186 (37%), Gaps = 30/186 (16%) Query: 4 GPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62 GPAG+ G G+VG G R + E E P GP+G GP G G PG K Sbjct: 795 GPAGANGEKGEVGPPGPAGSAGARGA----PGERGETGPPGPAGFAGPPGADGQPGAKGE 850 Query: 63 KPMICIALALDHHTLYTPQAPS----PATATGIRQPHSASLVPLSPLGPDLIPRPPRLPL 118 + A PQ PS P TG+ P A P R+ Sbjct: 851 QGE---AGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGP 907 Query: 119 PLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGN 178 P S+ PG G GP G+ GP+GA G SG G PG G Sbjct: 908 PGSNG----------------NPGPPGP--PGPSGKDGPKGARGDSGPPGRAGEPGLQGP 949 Query: 179 LGPPGE 184 GPPGE Sbjct: 950 AGPPGE 955 Score = 56.2 bits (134), Expect = 2e-08 Identities = 56/197 (28%), Positives = 74/197 (37%), Gaps = 14/197 (7%) Query: 4 GPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDSK 63 GP+G G + PG + E G GP G G PGP G+ + Sbjct: 921 GPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQR 980 Query: 64 PMICIALALDHHTLYTPQAPSPATATGIRQPHSAS--LVPLSPLGPDLIPRPPRLP---- 117 ++ L P P P+ G + AS P P+GP + P P Sbjct: 981 GIV--GLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREG 1038 Query: 118 LPLSHSWDSWDFLAFLESVGRTEPGEAG-DREKGPQGQPGPRGATGKSGAKGPQSAPGGI 176 P + D A ++ R E G G GP G PGP G TGK G +G A G + Sbjct: 1039 SPGADGPPGRDGAAGVKG-DRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPM 1097 Query: 177 GNLGPPGEMVTGKGVNG 193 G GP G +G+ G Sbjct: 1098 GPSGPAG----ARGIQG 1110 Score = 54.7 bits (130), Expect = 7e-08 Identities = 59/208 (28%), Positives = 74/208 (35%), Gaps = 57/208 (27%) Query: 2 AKGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVK 60 A+GP G G+ G+ GA G R + + E G G G GP+G PGP G Sbjct: 742 AQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG-KDGGRGLTGPIGPPGPAGAN 800 Query: 61 DSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPL 120 K + P PA + G R P GP PP Sbjct: 801 GEKGEV--------------GPPGPAGSAGARGA-PGERGETGPPGPAGFAGPPG----- 840 Query: 121 SHSWDSWDFLAFLESVGRTEPGEAGDR-------EKGPQGQPGPRGATGKSGAKGPQSA- 172 A + + E GEAG + +GP G PGP+G TG +G KG + A Sbjct: 841 ----------ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQ 890 Query: 173 -----------------PGGIGNLGPPG 183 PG GN GPPG Sbjct: 891 GPPGATGFPGAAGRVGPPGSNGNPGPPG 918 Score = 53.9 bits (128), Expect = 1e-07 Identities = 61/190 (32%), Positives = 71/190 (37%), Gaps = 41/190 (21%) Query: 3 KGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGP--SGPQGPLGYPGPPGVK 60 +GP G +G A PG P+ ++ G P P SGP GP G PGPPG Sbjct: 200 QGPMGPMGPRGPPGPAGAPG--------PQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKP 251 Query: 61 DSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPL 120 +A P A G R P P G P P LP Sbjct: 252 GDDG----------------EAGKPGKA-GERGPPG-------PQGARGFPGTPGLPGVK 287 Query: 121 SH----SWDSWDFLAFLESV-GRT-EPGEAGDR-EKGPQGQPGPRGATGKSGAKGPQSAP 173 H D A V G + PGE G GP+G PG RG TG +GA G + Sbjct: 288 GHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGND 347 Query: 174 GGIGNLGPPG 183 G G GPPG Sbjct: 348 GQPGPAGPPG 357 Score = 53.9 bits (128), Expect = 1e-07 Identities = 54/188 (28%), Positives = 65/188 (34%), Gaps = 58/188 (30%) Query: 4 GPAGSIGL----GDVGAKAQKPGGGRRDSIVPRTWEETEGI--PKGPSGPQGPLGYPGPP 57 G AG+ GL G+ G ++ G + PR T G PKG SGP GP G GPP Sbjct: 687 GEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPP 746 Query: 58 GVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLP 117 G++ P A GI P + GP+ Sbjct: 747 GLQGM--------------------PGERGAAGIAGP-KGDRGDVGEKGPE--------- 776 Query: 118 LPLSHSWDSWDFLAFLESVGRTEPGEAGDRE-KGPQGQPGPRGATGKSGAKGPQSAPGGI 176 PG+ G R GP G PGP GA G+ G GP G Sbjct: 777 ---------------------GAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSA 815 Query: 177 GNLGPPGE 184 G G PGE Sbjct: 816 GARGAPGE 823 Score = 52.4 bits (124), Expect = 4e-07 Identities = 57/188 (30%), Positives = 70/188 (37%), Gaps = 42/188 (22%) Query: 2 AKGPAGSIGL----GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPP 57 AKG AG+ G+ G G + G + P+ GI G G QGP G PGP Sbjct: 418 AKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIA-GFKGEQGPKGEPGPA 476 Query: 58 GVKDSKPMICIALALDHHTLYTPQ-APSPATATGIRQPHSASLVPLSPLGPDLIPRPPRL 116 G PQ AP PA G R + P+GP P Sbjct: 477 G---------------------PQGAPGPAGEEGKRGARGEP-GGVGPIGP-----PGER 509 Query: 117 PLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGI 176 P + + D LA + PGE +GP G GP+GA G G G PG Sbjct: 510 GAPGNRGFPGQDGLAGPKGA----PGE-----RGPSGLAGPKGANGDPGRPGEPGLPGAR 560 Query: 177 GNLGPPGE 184 G G PG+ Sbjct: 561 GLTGRPGD 568 Score = 52.0 bits (123), Expect = 5e-07 Identities = 58/193 (30%), Positives = 72/193 (37%), Gaps = 49/193 (25%) Query: 2 AKGPAGSIGLGDVGAKAQKPGG-------GRRDSIVPRTWEETEGI--PKGPSGPQGPLG 52 A GPAG G GA+ + PGG G R + R + +G+ PKG G +GP G Sbjct: 481 APGPAGEEGKR--GARGE-PGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSG 537 Query: 53 YPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPR 112 GP G D P P TG +P A P +GP P Sbjct: 538 LAGPKGANG-----------DPGRPGEPGLPGARGLTG--RPGDAG--PQGKVGPSGAPG 582 Query: 113 PPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDR-EKGPQGQPGPRGATGKSGAKGPQS 171 P P PG G R + G G PGP+GA G+ G G + Sbjct: 583 EDGRPGP---------------------PGPQGARGQPGVMGFPGPKGANGEPGKAGEKG 621 Query: 172 APGGIGNLGPPGE 184 PG G G PG+ Sbjct: 622 LPGAPGLRGLPGK 634 Score = 50.8 bits (120), Expect = 1e-06 Identities = 55/199 (27%), Positives = 72/199 (36%), Gaps = 43/199 (21%) Query: 3 KGPAGSIGLGDVGAKAQKPGG-GRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKD 61 +GP G +G + A +PG G + P + G+ KG G G +G PG PG Sbjct: 1016 RGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGV-KGDRGETGAVGAPGAPG--- 1071 Query: 62 SKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLS 121 P +P PA TG +Q P+GP + P Sbjct: 1072 -----------------PPGSPGPAGPTG-KQGDRGEAGAQGPMGPSGPAGARGIQGPQG 1113 Query: 122 HSWDSWDFLAFLESVGRTEPGEAGDRE-------KGPQGQPGPRGATGKSGAKGPQSAPG 174 D + EPGE G + +G G PGP G G SG GP G Sbjct: 1114 PRGDKGE---------AGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRG 1164 Query: 175 GIGNLGPPGEMVTGKGVNG 193 G +GP G+ G NG Sbjct: 1165 PPGPVGPSGK----DGANG 1179 Score = 48.9 bits (115), Expect = 4e-06 Identities = 57/205 (27%), Positives = 72/205 (35%), Gaps = 71/205 (34%) Query: 3 KGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62 +GP G G +A KPG +GP GPQG G+PG PG+ Sbjct: 242 RGPPGPPGKPGDDGEAGKPGKAGE---------------RGPPGPQGARGFPGTPGLPGV 286 Query: 63 KPMICIALALDHHTLYT--PQAPSPATATGIRQPHSASLVPLSP--LGPDLIPRPPRLPL 118 K H Y A A A G++ + SP +GP +P Sbjct: 287 KG----------HRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGER---- 332 Query: 119 PLSHSWDSWDFLAFLESVGRTEP-GEAG----DREKGPQGQPGP---------------R 158 GRT P G AG D + GP G PGP + Sbjct: 333 ------------------GRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAK 374 Query: 159 GATGKSGAKGPQSAPGGIGNLGPPG 183 G G +GA+GP+ A G G G PG Sbjct: 375 GEAGPTGARGPEGAQGPRGEPGTPG 399 Score = 48.5 bits (114), Expect = 5e-06 Identities = 54/187 (28%), Positives = 68/187 (36%), Gaps = 36/187 (19%) Query: 3 KGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKG---PSGPQGPLGYPGPPGV 59 +GP+G G +PG T + P+G PSG G G PGPPG Sbjct: 533 RGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGP 592 Query: 60 KDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLP-L 118 + ++ + P P A G +P A G +P P L L Sbjct: 593 QGARGQPGVM-----------GFPGPKGANG--EPGKA--------GEKGLPGAPGLRGL 631 Query: 119 PLSHSWDSWDFLAFLESVGRTEPGEAGDR-EKGPQGQPGPRGATGKSGAKGPQSAPGGIG 177 P E+ PG AG E+G QG PGP G G G GP G G Sbjct: 632 PGKDG----------ETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPG 681 Query: 178 NLGPPGE 184 + G PGE Sbjct: 682 DQGVPGE 688 Score = 40.8 bits (94), Expect = 0.001 Identities = 59/222 (26%), Positives = 70/222 (31%), Gaps = 69/222 (31%) Query: 3 KGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62 KG G+ GL + K + G E E GPSG QG G PGPPG + Sbjct: 620 KGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPG-EGG 678 Query: 63 KPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDL--IPRPPRLPLPL 120 KP P A A G+ P P P + P LP Sbjct: 679 KPG-------------DQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLP--- 722 Query: 121 SHSWDSWDFLAFLESVGRTEPGEAGDR-EKGPQGQP---------------------GPR 158 PG G + GP G P GP+ Sbjct: 723 ------------------GTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPK 764 Query: 159 GATGKSGAKGPQSAPGG------IGNLGPPGEMVTGKGVNGQ 194 G G G KGP+ APG G +GPPG G NG+ Sbjct: 765 GDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGP----AGANGE 802 Score = 32.0 bits (71), Expect = 0.50 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 7/39 (17%) Query: 153 GQPGPRGATGKSG-------AKGPQSAPGGIGNLGPPGE 184 GQPGP+G G+ G KGP G G GP G+ Sbjct: 98 GQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGD 136 >gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo sapiens] Length = 1418 Score = 67.0 bits (162), Expect = 1e-11 Identities = 69/186 (37%), Positives = 78/186 (41%), Gaps = 42/186 (22%) Query: 4 GPAGSIGL-GDVGAKAQK-PGGGR--RDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGV 59 GPAG G G GAK + P G R + PR T G P GP+G G G G PG Sbjct: 291 GPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSP-GPAGASGNPGTDGIPGA 349 Query: 60 KDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLP 119 K S IA A P P P G P A+ PLGP P + Sbjct: 350 KGSAGAPGIAGA--------PGFPGPRGPPG---PQGAT----GPLGPKGQTGEPGIA-- 392 Query: 120 LSHSWDSWDFLAFLESVG-RTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGN 178 F G + EPG AG PQG PGP G GK GA+G PGG+G Sbjct: 393 -----------GFKGEQGPKGEPGPAG-----PQGAPGPAGEEGKRGARGE---PGGVGP 433 Query: 179 LGPPGE 184 +GPPGE Sbjct: 434 IGPPGE 439 Score = 66.2 bits (160), Expect = 2e-11 Identities = 59/182 (32%), Positives = 73/182 (40%), Gaps = 31/182 (17%) Query: 3 KGPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKD 61 KGP G G G+ G + + G + + PR + G P P GP GP G PGPPG+ Sbjct: 50 KGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNP-GPPGPPGPPGPPGLGG 108 Query: 62 SKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLS 121 + +A D + G+ Q P+ P+GP P P P P Sbjct: 109 NFAAQ-MAGGFDEK--------AGGAQLGVMQG------PMGPMGPRGPPGPAGAPGPQG 153 Query: 122 HSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGP 181 F + G EPGE G GP G GP G GK G G PG G GP Sbjct: 154 ----------FQGNPG--EPGEPG--VSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGP 199 Query: 182 PG 183 PG Sbjct: 200 PG 201 Score = 58.2 bits (139), Expect = 7e-09 Identities = 50/143 (34%), Positives = 60/143 (41%), Gaps = 26/143 (18%) Query: 41 PKGPSGPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLV 100 PKGP GPQGP G GP G + K AP P G +P + Sbjct: 49 PKGPPGPQGPAGEQGPRGDRGDKG--------------EKGAPGPRGRDG--EPGT---- 88 Query: 101 PLSPLGPDLIPRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGA 160 P +P GP P PP P L ++ + F E G + G +GP G GPRG Sbjct: 89 PGNP-GPPGPPGPPGPP-GLGGNFAAQMAGGFDEKAGGAQLGVM----QGPMGPMGPRGP 142 Query: 161 TGKSGAKGPQSAPGGIGNLGPPG 183 G +GA GPQ G G G PG Sbjct: 143 PGPAGAPGPQGFQGNPGEPGEPG 165 Score = 58.2 bits (139), Expect = 7e-09 Identities = 55/188 (29%), Positives = 70/188 (37%), Gaps = 47/188 (25%) Query: 2 AKGPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVK 60 A GP GS G G G + + G + + P GI +GP GP+G G G PG + Sbjct: 1000 APGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGI-QGPQGPRGDKGEAGEPGER 1058 Query: 61 DSKPMICIALALDHHTLYT-----PQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPR 115 L H +T P P P+ G P P P GP Sbjct: 1059 ----------GLKGHRGFTGLQGLPGPPGPSGDQGASGPAG----PSGPRGP-------- 1096 Query: 116 LPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGG 175 P P+ S + + GP G PGPRG +G++G GP PG Sbjct: 1097 -PGPVGPSGK-----------------DGANGIPGPIGPPGPRGRSGETGPAGPPGNPGP 1138 Query: 176 IGNLGPPG 183 G GPPG Sbjct: 1139 PGPPGPPG 1146 Score = 57.8 bits (138), Expect = 9e-09 Identities = 59/186 (31%), Positives = 69/186 (37%), Gaps = 30/186 (16%) Query: 4 GPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62 GPAG+ G G+VG G R + E E P GP+G GP G G PG K Sbjct: 726 GPAGANGEKGEVGPPGPAGSAGARGA----PGERGETGPPGPAGFAGPPGADGQPGAKGE 781 Query: 63 KPMICIALALDHHTLYTPQAPS----PATATGIRQPHSASLVPLSPLGPDLIPRPPRLPL 118 + A PQ PS P TG+ P A P R+ Sbjct: 782 QGE---AGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGP 838 Query: 119 PLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGN 178 P S+ PG G GP G+ GP+GA G SG G PG G Sbjct: 839 PGSNG----------------NPGPPGP--PGPSGKDGPKGARGDSGPPGRAGEPGLQGP 880 Query: 179 LGPPGE 184 GPPGE Sbjct: 881 AGPPGE 886 Score = 56.2 bits (134), Expect = 2e-08 Identities = 56/197 (28%), Positives = 74/197 (37%), Gaps = 14/197 (7%) Query: 4 GPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDSK 63 GP+G G + PG + E G GP G G PGP G+ + Sbjct: 852 GPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQR 911 Query: 64 PMICIALALDHHTLYTPQAPSPATATGIRQPHSAS--LVPLSPLGPDLIPRPPRLP---- 117 ++ L P P P+ G + AS P P+GP + P P Sbjct: 912 GIV--GLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREG 969 Query: 118 LPLSHSWDSWDFLAFLESVGRTEPGEAG-DREKGPQGQPGPRGATGKSGAKGPQSAPGGI 176 P + D A ++ R E G G GP G PGP G TGK G +G A G + Sbjct: 970 SPGADGPPGRDGAAGVKG-DRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPM 1028 Query: 177 GNLGPPGEMVTGKGVNG 193 G GP G +G+ G Sbjct: 1029 GPSGPAG----ARGIQG 1041 Score = 54.7 bits (130), Expect = 7e-08 Identities = 59/208 (28%), Positives = 74/208 (35%), Gaps = 57/208 (27%) Query: 2 AKGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVK 60 A+GP G G+ G+ GA G R + + E G G G GP+G PGP G Sbjct: 673 AQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG-KDGGRGLTGPIGPPGPAGAN 731 Query: 61 DSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPL 120 K + P PA + G R P GP PP Sbjct: 732 GEKGEV--------------GPPGPAGSAGARGA-PGERGETGPPGPAGFAGPPG----- 771 Query: 121 SHSWDSWDFLAFLESVGRTEPGEAGDR-------EKGPQGQPGPRGATGKSGAKGPQSA- 172 A + + E GEAG + +GP G PGP+G TG +G KG + A Sbjct: 772 ----------ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQ 821 Query: 173 -----------------PGGIGNLGPPG 183 PG GN GPPG Sbjct: 822 GPPGATGFPGAAGRVGPPGSNGNPGPPG 849 Score = 53.9 bits (128), Expect = 1e-07 Identities = 61/190 (32%), Positives = 71/190 (37%), Gaps = 41/190 (21%) Query: 3 KGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGP--SGPQGPLGYPGPPGVK 60 +GP G +G A PG P+ ++ G P P SGP GP G PGPPG Sbjct: 131 QGPMGPMGPRGPPGPAGAPG--------PQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKP 182 Query: 61 DSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPL 120 +A P A G R P P G P P LP Sbjct: 183 GDDG----------------EAGKPGKA-GERGPPG-------PQGARGFPGTPGLPGVK 218 Query: 121 SH----SWDSWDFLAFLESV-GRT-EPGEAGDR-EKGPQGQPGPRGATGKSGAKGPQSAP 173 H D A V G + PGE G GP+G PG RG TG +GA G + Sbjct: 219 GHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGND 278 Query: 174 GGIGNLGPPG 183 G G GPPG Sbjct: 279 GQPGPAGPPG 288 Score = 53.9 bits (128), Expect = 1e-07 Identities = 54/188 (28%), Positives = 65/188 (34%), Gaps = 58/188 (30%) Query: 4 GPAGSIGL----GDVGAKAQKPGGGRRDSIVPRTWEETEGI--PKGPSGPQGPLGYPGPP 57 G AG+ GL G+ G ++ G + PR T G PKG SGP GP G GPP Sbjct: 618 GEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPP 677 Query: 58 GVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLP 117 G++ P A GI P + GP+ Sbjct: 678 GLQGM--------------------PGERGAAGIAGP-KGDRGDVGEKGPE--------- 707 Query: 118 LPLSHSWDSWDFLAFLESVGRTEPGEAGDRE-KGPQGQPGPRGATGKSGAKGPQSAPGGI 176 PG+ G R GP G PGP GA G+ G GP G Sbjct: 708 ---------------------GAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSA 746 Query: 177 GNLGPPGE 184 G G PGE Sbjct: 747 GARGAPGE 754 Score = 52.4 bits (124), Expect = 4e-07 Identities = 57/188 (30%), Positives = 70/188 (37%), Gaps = 42/188 (22%) Query: 2 AKGPAGSIGL----GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPP 57 AKG AG+ G+ G G + G + P+ GI G G QGP G PGP Sbjct: 349 AKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIA-GFKGEQGPKGEPGPA 407 Query: 58 GVKDSKPMICIALALDHHTLYTPQ-APSPATATGIRQPHSASLVPLSPLGPDLIPRPPRL 116 G PQ AP PA G R + P+GP P Sbjct: 408 G---------------------PQGAPGPAGEEGKRGARGEP-GGVGPIGP-----PGER 440 Query: 117 PLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGI 176 P + + D LA + PGE +GP G GP+GA G G G PG Sbjct: 441 GAPGNRGFPGQDGLAGPKGA----PGE-----RGPSGLAGPKGANGDPGRPGEPGLPGAR 491 Query: 177 GNLGPPGE 184 G G PG+ Sbjct: 492 GLTGRPGD 499 Score = 52.0 bits (123), Expect = 5e-07 Identities = 58/193 (30%), Positives = 72/193 (37%), Gaps = 49/193 (25%) Query: 2 AKGPAGSIGLGDVGAKAQKPGG-------GRRDSIVPRTWEETEGI--PKGPSGPQGPLG 52 A GPAG G GA+ + PGG G R + R + +G+ PKG G +GP G Sbjct: 412 APGPAGEEGKR--GARGE-PGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSG 468 Query: 53 YPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPR 112 GP G D P P TG +P A P +GP P Sbjct: 469 LAGPKGANG-----------DPGRPGEPGLPGARGLTG--RPGDAG--PQGKVGPSGAPG 513 Query: 113 PPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDR-EKGPQGQPGPRGATGKSGAKGPQS 171 P P PG G R + G G PGP+GA G+ G G + Sbjct: 514 EDGRPGP---------------------PGPQGARGQPGVMGFPGPKGANGEPGKAGEKG 552 Query: 172 APGGIGNLGPPGE 184 PG G G PG+ Sbjct: 553 LPGAPGLRGLPGK 565 Score = 50.8 bits (120), Expect = 1e-06 Identities = 55/199 (27%), Positives = 72/199 (36%), Gaps = 43/199 (21%) Query: 3 KGPAGSIGLGDVGAKAQKPGG-GRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKD 61 +GP G +G + A +PG G + P + G+ KG G G +G PG PG Sbjct: 947 RGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGV-KGDRGETGAVGAPGAPG--- 1002 Query: 62 SKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLS 121 P +P PA TG +Q P+GP + P Sbjct: 1003 -----------------PPGSPGPAGPTG-KQGDRGEAGAQGPMGPSGPAGARGIQGPQG 1044 Query: 122 HSWDSWDFLAFLESVGRTEPGEAGDRE-------KGPQGQPGPRGATGKSGAKGPQSAPG 174 D + EPGE G + +G G PGP G G SG GP G Sbjct: 1045 PRGDKGE---------AGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRG 1095 Query: 175 GIGNLGPPGEMVTGKGVNG 193 G +GP G+ G NG Sbjct: 1096 PPGPVGPSGK----DGANG 1110 Score = 48.9 bits (115), Expect = 4e-06 Identities = 57/205 (27%), Positives = 72/205 (35%), Gaps = 71/205 (34%) Query: 3 KGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62 +GP G G +A KPG +GP GPQG G+PG PG+ Sbjct: 173 RGPPGPPGKPGDDGEAGKPGKAGE---------------RGPPGPQGARGFPGTPGLPGV 217 Query: 63 KPMICIALALDHHTLYT--PQAPSPATATGIRQPHSASLVPLSP--LGPDLIPRPPRLPL 118 K H Y A A A G++ + SP +GP +P Sbjct: 218 KG----------HRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGER---- 263 Query: 119 PLSHSWDSWDFLAFLESVGRTEP-GEAG----DREKGPQGQPGP---------------R 158 GRT P G AG D + GP G PGP + Sbjct: 264 ------------------GRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAK 305 Query: 159 GATGKSGAKGPQSAPGGIGNLGPPG 183 G G +GA+GP+ A G G G PG Sbjct: 306 GEAGPTGARGPEGAQGPRGEPGTPG 330 Score = 48.5 bits (114), Expect = 5e-06 Identities = 54/187 (28%), Positives = 68/187 (36%), Gaps = 36/187 (19%) Query: 3 KGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKG---PSGPQGPLGYPGPPGV 59 +GP+G G +PG T + P+G PSG G G PGPPG Sbjct: 464 RGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGP 523 Query: 60 KDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLP-L 118 + ++ + P P A G +P A G +P P L L Sbjct: 524 QGARGQPGVM-----------GFPGPKGANG--EPGKA--------GEKGLPGAPGLRGL 562 Query: 119 PLSHSWDSWDFLAFLESVGRTEPGEAGDR-EKGPQGQPGPRGATGKSGAKGPQSAPGGIG 177 P E+ PG AG E+G QG PGP G G G GP G G Sbjct: 563 PGKDG----------ETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPG 612 Query: 178 NLGPPGE 184 + G PGE Sbjct: 613 DQGVPGE 619 Score = 40.8 bits (94), Expect = 0.001 Identities = 59/222 (26%), Positives = 70/222 (31%), Gaps = 69/222 (31%) Query: 3 KGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62 KG G+ GL + K + G E E GPSG QG G PGPPG + Sbjct: 551 KGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPG-EGG 609 Query: 63 KPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDL--IPRPPRLPLPL 120 KP P A A G+ P P P + P LP Sbjct: 610 KPG-------------DQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLP--- 653 Query: 121 SHSWDSWDFLAFLESVGRTEPGEAGDR-EKGPQGQP---------------------GPR 158 PG G + GP G P GP+ Sbjct: 654 ------------------GTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPK 695 Query: 159 GATGKSGAKGPQSAPGG------IGNLGPPGEMVTGKGVNGQ 194 G G G KGP+ APG G +GPPG G NG+ Sbjct: 696 GDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGP----AGANGE 733 Score = 39.3 bits (90), Expect = 0.003 Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 8/52 (15%) Query: 140 EPGEAGDREK--GPQGQPGPRGATGKSGA------KGPQSAPGGIGNLGPPG 183 + GE GD + GP+G PGP+G G+ G KG + APG G G PG Sbjct: 36 QKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPG 87 Score = 38.1 bits (87), Expect = 0.007 Identities = 25/58 (43%), Positives = 28/58 (48%), Gaps = 14/58 (24%) Query: 140 EPGEAGD--REKGPQGQPGP---------RGATGKSGAKGPQ---SAPGGIGNLGPPG 183 EPG+ D KGP G GP RG G+ GA GP+ PG GN GPPG Sbjct: 39 EPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPG 96 Score = 30.0 bits (66), Expect = 1.9 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%) Query: 147 REKGPQGQPG-PRGATGKSGAKGPQSAPGGIGNLGPPGE 184 R+ GP+GQ G P G KGP G G GP G+ Sbjct: 29 RQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGD 67 >gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] Length = 1464 Score = 65.9 bits (159), Expect = 3e-11 Identities = 61/186 (32%), Positives = 70/186 (37%), Gaps = 42/186 (22%) Query: 4 GPAGSIGL----GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGV 59 GPAG G G GAK + G + P P GP+GP GP+G G PG Sbjct: 809 GPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPG-------PAGPAGPPGPIGNVGAPGA 861 Query: 60 KDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLP 119 K ++ + P ATG P +A V P GP PP P P Sbjct: 862 KGARG-----------------SAGPPGATGF--PGAAGRV--GPPGPSGNAGPPGPPGP 900 Query: 120 LSHSWDSWDFLAFLESVGRTEPGEAG-DREKGPQGQPGPRGATGKSGAKGPQSAPGGIGN 178 R E G AG E GP G PGP G G GA GP APG G Sbjct: 901 AGKEGGKGP---------RGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGP 951 Query: 179 LGPPGE 184 G G+ Sbjct: 952 QGIAGQ 957 Score = 65.1 bits (157), Expect = 5e-11 Identities = 56/169 (33%), Positives = 69/169 (40%), Gaps = 41/169 (24%) Query: 33 TWEETEGI--PKGPSGPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAP------- 83 T +ET G+ PKG +GP+GP G GPPG +D P L P P Sbjct: 103 TDQETTGVEGPKGDTGPRGPRGPAGPPG-RDGIP--------GQPGLPGPPGPPGPPGPP 153 Query: 84 ------SPATATGIRQPHSASLV---PLSPLGPDLIPRPPRLPLPLSHSWDSWDFLAFLE 134 +P + G + + + P+ P GP +P PP P P F Sbjct: 154 GLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQG----------FQG 203 Query: 135 SVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGPPG 183 G EPGE G GP G GP G GK+G G PG G GPPG Sbjct: 204 PPG--EPGEPG--ASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPG 248 Score = 65.1 bits (157), Expect = 5e-11 Identities = 66/209 (31%), Positives = 80/209 (38%), Gaps = 43/209 (20%) Query: 4 GPAGSIGL----GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGV 59 GPAG G G+ G G R R + +G+ GP GP G G PGP G Sbjct: 461 GPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVA-GPKGPAGERGSPGPAGP 519 Query: 60 KDSKPMIC----IALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPR 115 K S L +P +P P TG P P G D P PP Sbjct: 520 KGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTG----------PPGPAGQDGRPGPPG 569 Query: 116 LPLPLSHSWDSWDFLAFLESVGRT-EPGEAGDR----------------EKGPQGQPGPR 158 P + + F G EPG+AG+R E G QG PGP Sbjct: 570 PPGARGQA----GVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPA 625 Query: 159 GATGKSGAKGPQSAPG--GI-GNLGPPGE 184 G G+ G +GP +PG G+ G GPPGE Sbjct: 626 GPAGERGEQGPAGSPGFQGLPGPAGPPGE 654 Score = 62.0 bits (149), Expect = 5e-10 Identities = 68/209 (32%), Positives = 82/209 (39%), Gaps = 45/209 (21%) Query: 3 KGPAGSIGLGDVGAKAQKPGG-GRRDSIVP---RTWEETEGIP--------------KGP 44 +GP G G +A KPG G R P R T G+P KG Sbjct: 220 RGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGD 279 Query: 45 SGPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSP 104 +GP GP G PG PG ++ P L P AP PA A G + + P P Sbjct: 280 AGPAGPKGEPGSPG-ENGAPGQMGPRGLPGER-GRPGAPGPAGARG-NDGATGAAGPPGP 336 Query: 105 LGPDLIPRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKS 164 GP PP P +VG GEAG + GP+G GP+G G+ Sbjct: 337 TGP---AGPPGFP----------------GAVGAK--GEAGPQ--GPRGSEGPQGVRGEP 373 Query: 165 GAKGPQSAPGGIGNLGPPGEMVTGKGVNG 193 G GP A G GN G G+ KG NG Sbjct: 374 GPPGPAGAAGPAGNPGADGQ-PGAKGANG 401 Score = 62.0 bits (149), Expect = 5e-10 Identities = 61/186 (32%), Positives = 70/186 (37%), Gaps = 42/186 (22%) Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62 GPAG G G VGAK + G R S P+ G P GP+G GP G PG G + Sbjct: 338 GPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPG-PPGPAGAAGPAGNPGADGQPGA 396 Query: 63 KPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLSH 122 K AP A A G S P P GP P P + Sbjct: 397 KG--------------ANGAPGIAGAPGFPGARGPS-GPQGPGGP---------PGPKGN 432 Query: 123 SWDSWDFLAFLESVGRTEPGEAGDR----EKGPQGQPGPRGATGKSGAKGPQSAPGGIGN 178 S + PG GD E GP G GP G G+ G +G + PG G Sbjct: 433 SGEPG------------APGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGL 480 Query: 179 LGPPGE 184 GPPGE Sbjct: 481 PGPPGE 486 Score = 60.8 bits (146), Expect = 1e-09 Identities = 64/192 (33%), Positives = 77/192 (40%), Gaps = 36/192 (18%) Query: 4 GPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEETEGI-----PKGPSGPQGPLGYPGPP 57 GPAG G +G+VGA K G R S P G P GPSG GP G PGP Sbjct: 845 GPAGPPGPIGNVGAPGAK---GARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPA 901 Query: 58 GVKDSK-PMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRL 116 G + K P A + P P PA G + P +P GP I + Sbjct: 902 GKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTP-GPQGIAGQRGV 960 Query: 117 PLPLSHSWDSWDFLAFLESVGRTEPGEAGDRE----KGPQGQPGPRGATGKSGAKGPQSA 172 VG PG+ G+R GP G+PG +G +G SG +GP Sbjct: 961 -------------------VGL--PGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGP 999 Query: 173 PGGIGNLGPPGE 184 G G GPPGE Sbjct: 1000 MGPPGLAGPPGE 1011 Score = 57.4 bits (137), Expect = 1e-08 Identities = 59/187 (31%), Positives = 71/187 (37%), Gaps = 15/187 (8%) Query: 2 AKGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVK 60 A GPAG+ G G GAK G + G P+GP GP GP G G PG Sbjct: 381 AAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSG-PQGPGGPPGPKGNSGEPGAP 439 Query: 61 DSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPP-RLPLP 119 SK + + P PA G R GP +P PP P Sbjct: 440 GSKG--DTGAKGEPGPVGVQGPPGPAGEEGKRGARGEP-------GPTGLPGPPGERGGP 490 Query: 120 LSHSWDSWDFLAFLESVG--RTEPGEAGDR-EKGPQGQPGPRGATGKSGAKGPQSAPGGI 176 S + D +A + R PG AG + G G+PG G G G G +PG Sbjct: 491 GSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPD 550 Query: 177 GNLGPPG 183 G GPPG Sbjct: 551 GKTGPPG 557 Score = 55.8 bits (133), Expect = 3e-08 Identities = 64/211 (30%), Positives = 78/211 (36%), Gaps = 34/211 (16%) Query: 3 KGPAGSIGL-GDVGAK-----AQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGY--- 53 KGPAG G G G K A +PG T P G +GP GP G Sbjct: 505 KGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGR 564 Query: 54 ---PGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLI 110 PGPPG + ++ P A G+ P A + P G D Sbjct: 565 PGPPGPPGARGQAGVMGFPGPKG-----AAGEPGKAGERGVPGPPGA----VGPAGKDGE 615 Query: 111 PRPPRLPLPLSHSWDSWD--------FLAFLESVGRTEPGEAGDREKGPQGQPGPRGATG 162 P P + + + F G PGEAG + G QG PG GA G Sbjct: 616 AGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAG--PPGEAG--KPGEQGVPGDLGAPG 671 Query: 163 KSGAKGPQSAPGGIGNLGPPGEMVTGKGVNG 193 SGA+G + PG G GPPG +G NG Sbjct: 672 PSGARGERGFPGERGVQGPPGP-AGPRGANG 701 Score = 55.1 bits (131), Expect = 6e-08 Identities = 62/198 (31%), Positives = 70/198 (35%), Gaps = 54/198 (27%) Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKD 61 +G G IG G GA K G P G +G GP GP G+ GPPG D Sbjct: 763 RGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPG-DRGEPGPPGPAGFAGPPGA-D 820 Query: 62 SKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLS 121 +P P A A G P P P GP P P+ Sbjct: 821 GQPG-------------AKGEPGDAGAKGDAGPPG----PAGPAGP---------PGPIG 854 Query: 122 HSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGP 181 + VG PG KG +G GP GATG GA G PG GN GP Sbjct: 855 N-------------VGA--PGA-----KGARGSAGPPGATGFPGAAGRVGPPGPSGNAGP 894 Query: 182 PGE-----MVTGKGVNGQ 194 PG GKG G+ Sbjct: 895 PGPPGPAGKEGGKGPRGE 912 Score = 53.5 bits (127), Expect = 2e-07 Identities = 55/188 (29%), Positives = 62/188 (32%), Gaps = 34/188 (18%) Query: 2 AKGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKD 61 AKG G G PG ++ + E P GP+GP GP+G GP G Sbjct: 1032 AKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAG--- 1088 Query: 62 SKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLS 121 PQ P Q G P PP P Sbjct: 1089 ------------------PQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQG 1130 Query: 122 HSWDSWDFLAFLESVGRTEPGEAGDREK-------GPQGQPGPRGATGKSGAKGPQSAPG 174 S S + R PG AG K GP G PGPRG TG +G GP PG Sbjct: 1131 PSGASGP------AGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPG 1184 Query: 175 GIGNLGPP 182 G GPP Sbjct: 1185 PPGPPGPP 1192 Score = 52.0 bits (123), Expect = 5e-07 Identities = 54/200 (27%), Positives = 68/200 (34%), Gaps = 50/200 (25%) Query: 4 GPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDSK 63 GP G GL ++ + G + R +G +GP GP G PG PG Sbjct: 998 GPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGA---- 1053 Query: 64 PMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLSHS 123 P PA +G R + P P+GP P P Sbjct: 1054 ----------------PGPVGPAGKSGDRG-ETGPAGPAGPVGPVGARGPAGPQGPRGD- 1095 Query: 124 WDSWDFLAFLESVGRTEPGEAGDRE----------KGPQGQPGPRGATGKSGAKGPQSAP 173 + E GE GDR +GP G PG G G SGA GP Sbjct: 1096 --------------KGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPR 1141 Query: 174 GGIGNLGPPGEMVTGKGVNG 193 G G+ G PG+ G+NG Sbjct: 1142 GPPGSAGAPGK----DGLNG 1157 Score = 50.8 bits (120), Expect = 1e-06 Identities = 46/155 (29%), Positives = 58/155 (37%), Gaps = 42/155 (27%) Query: 42 KGPSGPQGPLGYPGPPGV--KDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASL 99 +GP GP GP G GPPG ++ P + D +P A TG Sbjct: 994 RGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDG----SPGAKGDRGETG--------- 1040 Query: 100 VPLSPLGPDLIPRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDR-EKGPQGQPGPR 158 P GP P P P P+ + G++GDR E GP G GP Sbjct: 1041 ----PAGPPGAPGAPGAPGPVGPA------------------GKSGDRGETGPAGPAGPV 1078 Query: 159 GATGKSGAKGPQSAPGGIGNLGPPGEMVTGKGVNG 193 G G G GPQ G G G G+ +G+ G Sbjct: 1079 GPVGARGPAGPQGPRGDKGETGEQGD----RGIKG 1109 Score = 43.1 bits (100), Expect = 2e-04 Identities = 55/188 (29%), Positives = 63/188 (33%), Gaps = 64/188 (34%) Query: 4 GPAGSIGLG--DVGAKAQKPGG-----GRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGP 56 GP G++G D A AQ P G G R P +G+P GP+GP G G PG Sbjct: 602 GPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLP-GPAGPPGEAGKPGE 660 Query: 57 PGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRL 116 GV AP P+ A G R V GP Sbjct: 661 QGVPGDLG-----------------APGPSGARGERGFPGERGVQ----GP--------- 690 Query: 117 PLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGI 176 PG AG R G G PG GA G +GA G + G Sbjct: 691 ------------------------PGPAGPR--GANGAPGNDGAKGDAGAPGAPGSQGAP 724 Query: 177 GNLGPPGE 184 G G PGE Sbjct: 725 GLQGMPGE 732 Score = 35.8 bits (81), Expect = 0.035 Identities = 38/134 (28%), Positives = 47/134 (35%), Gaps = 29/134 (21%) Query: 2 AKGPAGSIG----------LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPL 51 A+GPAG G GD G K + G + P +G P G SGP GP Sbjct: 1083 ARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQG-PSGASGPAGPR 1141 Query: 52 GYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIP 111 G PG G + + + P P TG P+GP P Sbjct: 1142 GPPGSAGAPGKDGLNGLPGPIG--------PPGPRGRTG----------DAGPVGPPGPP 1183 Query: 112 RPPRLPLPLSHSWD 125 PP P P S +D Sbjct: 1184 GPPGPPGPPSAGFD 1197 Score = 34.3 bits (77), Expect = 0.10 Identities = 16/42 (38%), Positives = 20/42 (47%) Query: 142 GEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGPPG 183 G ++ G GP+G TG G +GP PG G G PG Sbjct: 98 GSESPTDQETTGVEGPKGDTGPRGPRGPAGPPGRDGIPGQPG 139 >gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo sapiens] Length = 1818 Score = 64.7 bits (156), Expect = 7e-11 Identities = 62/189 (32%), Positives = 76/189 (40%), Gaps = 34/189 (17%) Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKD 61 KG G +G GD G + PG +D + E+ + GP GP G G PGPPG K Sbjct: 1317 KGNPGPVGFPGDPGPPGE-PGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPG-KR 1374 Query: 62 SKPMICIALALDHHTLYTPQAPS--PATATGIRQPHSASLVPLSPLGPDLIPRPPRL--- 116 P A +A + P TG P+ P GP P P L Sbjct: 1375 GPPGAAGAEGRQGEKGAKGEAGAEGPPGKTG----------PVGPQGPAGKPGPEGLRGI 1424 Query: 117 PLPLSHSWDSWDFLAFLESVGRTEPGEAG-DREKGPQGQPGPRGATGKSGAKGPQSAPGG 175 P P+ + PG AG D GP G PG G G G+KG + PG Sbjct: 1425 PGPVGE---------------QGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGL 1469 Query: 176 IGNLGPPGE 184 IG +GPPGE Sbjct: 1470 IGLIGPPGE 1478 Score = 64.3 bits (155), Expect = 9e-11 Identities = 57/186 (30%), Positives = 71/186 (38%), Gaps = 54/186 (29%) Query: 4 GPAGSIG----LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGV 59 GPAGS G G++G QK G ++ E P GP G QGP+G PG G Sbjct: 1129 GPAGSPGEDGDKGEIGEPGQKGSKG----------DKGENGPPGPPGLQGPVGAPGIAG- 1177 Query: 60 KDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLP 119 D +P P+ + P P+G +P PP Sbjct: 1178 GDGEP--------------GPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPG---- 1219 Query: 120 LSHSWDSWDFLAFLESVGRTEPGEAGD-REKGPQGQPGPRGATGKSGAKGPQSAPGGIGN 178 E GE GD GP G PGPRG G +GA GPQ PG +G+ Sbjct: 1220 --------------------EKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGS 1259 Query: 179 LGPPGE 184 +G GE Sbjct: 1260 VGGVGE 1265 Score = 60.5 bits (145), Expect = 1e-09 Identities = 61/202 (30%), Positives = 76/202 (37%), Gaps = 65/202 (32%) Query: 3 KGPAGSIGL----GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPG 58 +GP G+ G+ G+ G + Q+ G++ E G P GP GP G G PGPPG Sbjct: 1167 QGPVGAPGIAGGDGEPGPRGQQGMFGQKGD------EGARGFP-GPPGPIGLQGLPGPPG 1219 Query: 59 VKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPL 118 K D + P P P P P G D PP Sbjct: 1220 EKGENG--------DVGPMGPPGPPGPRG-------------PQGPNGADGPQGPP---- 1254 Query: 119 PLSHSWDSWDFLAFLESVG----RTEPGEAGD-------------REKGPQGQPGPRGAT 161 + SVG + EPGEAG+ E+G +G+ GP GA Sbjct: 1255 ------------GSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAA 1302 Query: 162 GKSGAKGPQSAPGGIGNLGPPG 183 G GAKGP G GN GP G Sbjct: 1303 GPPGAKGPPGDDGPKGNPGPVG 1324 Score = 59.3 bits (142), Expect = 3e-09 Identities = 56/192 (29%), Positives = 69/192 (35%), Gaps = 31/192 (16%) Query: 4 GPAGSIGLGDV-GAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62 GP G G+G G + +K G + P + G GP G GP+G+PG PG Sbjct: 1276 GPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPG-DDGPKGNPGPVGFPGDPG---- 1330 Query: 63 KPMICIALALDHHTLYTPQAPSPATATGI-----RQPHSASLVPLSPLGPDLIPRPPRL- 116 P P PA G+ P P G P PP Sbjct: 1331 ----------------PPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKR 1374 Query: 117 --PLPLSHSWDSWDFLAFLESVGRTEPGEAGD-REKGPQGQPGPRGATGKSGAKGPQSAP 173 P + A E+ PG+ G +GP G+PGP G G G G Q P Sbjct: 1375 GPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLP 1434 Query: 174 GGIGNLGPPGEM 185 G G GPPG M Sbjct: 1435 GAAGQDGPPGPM 1446 Score = 58.5 bits (140), Expect = 5e-09 Identities = 62/198 (31%), Positives = 73/198 (36%), Gaps = 44/198 (22%) Query: 4 GPAGSIGL----GDVGAKAQKPG----GGRRDSIVPRTWEETEGIP--------KGPSGP 47 GP G GL G GAK PG G+ R + G+P KG GP Sbjct: 1003 GPPGEQGLPGAAGKEGAKGD-PGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGP 1061 Query: 48 QGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSA--SLVPLSPL 105 QGP G G PG + S A + P P P G A P P Sbjct: 1062 QGPPGPVGSPGERGS--------AGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPA 1113 Query: 106 GPDLIPRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSG 165 G D + P LP P + PGE GD KG G+PG +G+ G G Sbjct: 1114 GRDGVQGPVGLPGPAGPAGS---------------PGEDGD--KGEIGEPGQKGSKGDKG 1156 Query: 166 AKGPQSAPGGIGNLGPPG 183 GP PG G +G PG Sbjct: 1157 ENGPPGPPGLQGPVGAPG 1174 Score = 55.8 bits (133), Expect = 3e-08 Identities = 59/211 (27%), Positives = 79/211 (37%), Gaps = 51/211 (24%) Query: 3 KGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIP-----KGPSGPQGPLGYPGPP 57 +GP G G KPG P+ +G P +GP GPQGP+G+PGP Sbjct: 894 RGPTGPRGSRGARGPTGKPG--------PKGTSGGDGPPGPPGERGPQGPQGPVGFPGPK 945 Query: 58 GV-----KDSKPMICIALALDHHTLYTPQA--PSPATATGIRQPHSASLVPLSPLGPDLI 110 G KD P T + + P P G + P + P+G Sbjct: 946 GPPGPPGKDGLPG---HPGQRGETGFQGKTGPPGPGGVVGPQGPTGET----GPIGERGH 998 Query: 111 PRPPRLP----LPLSHSWDSWDFLAFLESVGRTEPGEAGDREK----------GPQGQPG 156 P PP P LP + + + +PG G K G +G PG Sbjct: 999 PGPPGPPGEQGLPGAAGKEG----------AKGDPGPQGISGKDGPAGLRGFPGERGLPG 1048 Query: 157 PRGATGKSGAKGPQSAPGGIGNLGPPGEMVT 187 +GA G G +GPQ PG +G+ G G T Sbjct: 1049 AQGAPGLKGGEGPQGPPGPVGSPGERGSAGT 1079 Score = 54.3 bits (129), Expect = 9e-08 Identities = 64/216 (29%), Positives = 80/216 (37%), Gaps = 48/216 (22%) Query: 3 KGPAGSIGL----GDVGAKAQKPGGGRRDSIVPRTWEETEGIP--------KGPSGPQGP 50 +GP G +GL G VG G P+ +G P +G G G Sbjct: 540 RGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGG 599 Query: 51 LGYPGPPGVKDSKPMICI-ALALD--HHTLYTPQAP-SPATATGIRQPHS--------AS 98 G PG PG K + + L D H PQ P P G+R Sbjct: 600 RGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGE 659 Query: 99 LVPLSPLGPDLIPRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPR 158 P LGP P P P +A ++ PG G+ GPQG+PGP Sbjct: 660 AGPRGLLGPRGTPGAPGQP-----------GMAGVDG----PPGPKGNM--GPQGEPGP- 701 Query: 159 GATGKSGAKGPQSAPGGIGNLGPPGEMVTGKGVNGQ 194 G+ G GPQ PG G +GPPGE KG G+ Sbjct: 702 --PGQQGNPGPQGLPGPQGPIGPPGE----KGPQGK 731 Score = 54.3 bits (129), Expect = 9e-08 Identities = 64/207 (30%), Positives = 78/207 (37%), Gaps = 25/207 (12%) Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIP--KGPSGPQGPLGYPGPPGVK 60 GP G G G GA + G + R ++ G+P KG G +GP G PGPPG Sbjct: 583 GPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDD 642 Query: 61 DSK-------PMICIALALDHHTLY---TPQAPSPATATGIRQPHSASLVPLSPLGPDLI 110 + P A L TP AP G+ P P +GP Sbjct: 643 GMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPG----PKGNMGPQGE 698 Query: 111 PRPPRL---PLPLSHSWDSWDFLAFLESVGRTEPGEAG-DREKGPQGQPGPRGATGKSGA 166 P PP P P E + +PG AG GP G PG G +G+ GA Sbjct: 699 PGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGA 758 Query: 167 KGPQSAPGGIGNLGPPGEMVTGKGVNG 193 GP G IG GP G KG +G Sbjct: 759 LGPPGPQGPIGYPGPRGV----KGADG 781 Score = 54.3 bits (129), Expect = 9e-08 Identities = 58/191 (30%), Positives = 76/191 (39%), Gaps = 13/191 (6%) Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62 GP G GL G G + + G+ P +G P G +GP G G+PGPPG Sbjct: 949 GPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQG-PTGETGPIGERGHPGPPGPPGE 1007 Query: 63 KPMICIALALDHHTLYTPQAPSPATA-TGIRQPHSASLVPLSPLGPDLI----PRPPRLP 117 + + A PQ S G+R +P + P L P+ P P Sbjct: 1008 QGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGP 1067 Query: 118 LPLSHSWDSWDFLAFLESVGRT----EPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAP 173 + S + GR PG AG EKG G+ GP+G G+ G +GP P Sbjct: 1068 VGSPGERGSAGTAGPIGLPGRPGPQGPPGPAG--EKGAPGEKGPQGPAGRDGVQGPVGLP 1125 Query: 174 GGIGNLGPPGE 184 G G G PGE Sbjct: 1126 GPAGPAGSPGE 1136 Score = 52.4 bits (124), Expect = 4e-07 Identities = 54/183 (29%), Positives = 60/183 (32%), Gaps = 55/183 (30%) Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKD 61 +GP GS G G GA +K G PR G P+G G +GP G PGP G Sbjct: 861 QGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTG-PRGSRGARGPTGKPGPKG--- 916 Query: 62 SKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLS 121 T P G R P P GP P P P P Sbjct: 917 -----------------TSGGDGPPGPPGERGPQG-------PQGPVGFPGPKGPPGP-- 950 Query: 122 HSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGP 181 PG+ G G PG RG TG G GP G +G GP Sbjct: 951 -------------------PGK-----DGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGP 986 Query: 182 PGE 184 GE Sbjct: 987 TGE 989 Score = 50.8 bits (120), Expect = 1e-06 Identities = 51/160 (31%), Positives = 60/160 (37%), Gaps = 42/160 (26%) Query: 42 KGPSGPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPS-PATATGIRQPHSASLV 100 +GP GP GP G GPPG+ Q P+ P G R P + Sbjct: 453 EGPPGPAGPAGIMGPPGL---------------------QGPTGPPGDPGDRGPPGRPGL 491 Query: 101 PLSPLGPDLIPRPP--RLPLPLSHSWDSW----------DFLAFLESVG---RTEPGEAG 145 P G D +P PP L LP + D A L+ R PG G Sbjct: 492 P----GADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMG 547 Query: 146 -DREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGPPGE 184 GP G PG GA G+SG GPQ G G GP G+ Sbjct: 548 LTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGK 587 Score = 50.4 bits (119), Expect = 1e-06 Identities = 51/185 (27%), Positives = 66/185 (35%), Gaps = 61/185 (32%) Query: 3 KGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62 KGP G GL + PG ++ + E GP GPQGP+GYPGP GVK Sbjct: 726 KGPQGKPGLAGLPGADGPPGHPGKEG------QSGEKGALGPPGPQGPIGYPGPRGVKG- 778 Query: 63 KPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLSH 122 A G+R + G D P Sbjct: 779 -------------------------ADGVRGLKGSK----GEKGEDGFP----------- 798 Query: 123 SWDSWDFLAFLESVG-RTEPGEAGDREKGPQGQPGPRGATGKSGA---KGPQSAPGGIGN 178 F +G + + GE G + GP+G+ GP G G++G GP G G Sbjct: 799 --------GFKGDMGLKGDRGEVG--QIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGK 848 Query: 179 LGPPG 183 LG PG Sbjct: 849 LGVPG 853 Score = 50.1 bits (118), Expect = 2e-06 Identities = 58/219 (26%), Positives = 79/219 (36%), Gaps = 63/219 (28%) Query: 4 GPAGSIGL----GDVGAKAQKPGGGRRDSIVPRTWEETEGIP--------KGPSGPQGPL 51 GP G G+ G++G + G R + PR G P GP G GP Sbjct: 637 GPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQ 696 Query: 52 GYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIP 111 G PGPPG + + P P G + P + P GP P Sbjct: 697 GEPGPPGQQGN--------------------PGPQGLPGPQGP----IGPPGEKGPQGKP 732 Query: 112 RPPRLPL---PLSHSWDSWDFLAFLESVGRTEPGEAGDR-------EKGPQGQPGPRGAT 161 LP P H + G++G++ +GP G PGPRG Sbjct: 733 GLAGLPGADGPPGHPG---------------KEGQSGEKGALGPPGPQGPIGYPGPRGVK 777 Query: 162 GKSGAKGPQSAPGGIGNLGPPGEM--VTGKGVNGQVFQL 198 G G +G + + G G G PG + KG G+V Q+ Sbjct: 778 GADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQI 816 Score = 50.1 bits (118), Expect = 2e-06 Identities = 64/218 (29%), Positives = 80/218 (36%), Gaps = 54/218 (24%) Query: 4 GPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62 GP G++G G+ G Q+ G P+G GPQGP+G PG G + Sbjct: 688 GPKGNMGPQGEPGPPGQQGNPG----------------PQGLPGPQGPIGPPGEKGPQ-G 730 Query: 63 KPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLP----- 117 KP + D P P +G +L P P GP P P + Sbjct: 731 KPGLAGLPGADG----PPGHPGKEGQSG----EKGALGPPGPQGPIGYPGPRGVKGADGV 782 Query: 118 --LPLSHSWDSWD-FLAFLESVG----RTEPGEAGDREK----------GPQGQPGPRGA 160 L S D F F +G R E G+ G R + GP G PGP G Sbjct: 783 RGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQ 842 Query: 161 TGKSGAKGPQSAPGGIGNLGPPGEMVTG----KGVNGQ 194 G+ G G PG G GP G TG G NG+ Sbjct: 843 AGEKGKLGVPGLPGYPGRQGPKGS--TGFPGFPGANGE 878 Score = 50.1 bits (118), Expect = 2e-06 Identities = 55/196 (28%), Positives = 67/196 (34%), Gaps = 48/196 (24%) Query: 2 AKGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIP--KGPSGPQGPLGYPGPPGV 59 A+GP G G A KPG I E+ G+P G GP GP+G PG PG+ Sbjct: 1397 AEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQ--GLPGAAGQDGPPGPMGPPGLPGL 1454 Query: 60 KDSK--------PMICIALALDHHTLYTPQAPSPATATGIRQPHSASLV-PLSPLGPDLI 110 K P + + P T + P PLGP Sbjct: 1455 KGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGP--- 1511 Query: 111 PRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQ 170 P PP LP P KG +G GP G G SG GP Sbjct: 1512 PGPPGLPGPQG--------------------------PKGNKGSTGPAGQKGDSGLPGPP 1545 Query: 171 SAPGGIGNLGPPGEMV 186 +P GPPGE++ Sbjct: 1546 GSP------GPPGEVI 1555 Score = 42.7 bits (99), Expect = 3e-04 Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 2/55 (3%) Query: 131 AFLESVGRTEPG--EAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGPPG 183 A+ E + EP E G +GP G GP G G G +GP PG G+ GPPG Sbjct: 433 AYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPG 487 >gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo sapiens] Length = 1767 Score = 64.7 bits (156), Expect = 7e-11 Identities = 62/189 (32%), Positives = 76/189 (40%), Gaps = 34/189 (17%) Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKD 61 KG G +G GD G + PG +D + E+ + GP GP G G PGPPG K Sbjct: 1266 KGNPGPVGFPGDPGPPGE-PGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPG-KR 1323 Query: 62 SKPMICIALALDHHTLYTPQAPS--PATATGIRQPHSASLVPLSPLGPDLIPRPPRL--- 116 P A +A + P TG P+ P GP P P L Sbjct: 1324 GPPGAAGAEGRQGEKGAKGEAGAEGPPGKTG----------PVGPQGPAGKPGPEGLRGI 1373 Query: 117 PLPLSHSWDSWDFLAFLESVGRTEPGEAG-DREKGPQGQPGPRGATGKSGAKGPQSAPGG 175 P P+ + PG AG D GP G PG G G G+KG + PG Sbjct: 1374 PGPVGE---------------QGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGL 1418 Query: 176 IGNLGPPGE 184 IG +GPPGE Sbjct: 1419 IGLIGPPGE 1427 Score = 64.3 bits (155), Expect = 9e-11 Identities = 57/186 (30%), Positives = 71/186 (38%), Gaps = 54/186 (29%) Query: 4 GPAGSIG----LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGV 59 GPAGS G G++G QK G ++ E P GP G QGP+G PG G Sbjct: 1078 GPAGSPGEDGDKGEIGEPGQKGSKG----------DKGENGPPGPPGLQGPVGAPGIAG- 1126 Query: 60 KDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLP 119 D +P P+ + P P+G +P PP Sbjct: 1127 GDGEP--------------GPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPG---- 1168 Query: 120 LSHSWDSWDFLAFLESVGRTEPGEAGD-REKGPQGQPGPRGATGKSGAKGPQSAPGGIGN 178 E GE GD GP G PGPRG G +GA GPQ PG +G+ Sbjct: 1169 --------------------EKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGS 1208 Query: 179 LGPPGE 184 +G GE Sbjct: 1209 VGGVGE 1214 Score = 60.5 bits (145), Expect = 1e-09 Identities = 61/202 (30%), Positives = 76/202 (37%), Gaps = 65/202 (32%) Query: 3 KGPAGSIGL----GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPG 58 +GP G+ G+ G+ G + Q+ G++ E G P GP GP G G PGPPG Sbjct: 1116 QGPVGAPGIAGGDGEPGPRGQQGMFGQKGD------EGARGFP-GPPGPIGLQGLPGPPG 1168 Query: 59 VKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPL 118 K D + P P P P P G D PP Sbjct: 1169 EKGENG--------DVGPMGPPGPPGPRG-------------PQGPNGADGPQGPP---- 1203 Query: 119 PLSHSWDSWDFLAFLESVG----RTEPGEAGD-------------REKGPQGQPGPRGAT 161 + SVG + EPGEAG+ E+G +G+ GP GA Sbjct: 1204 ------------GSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAA 1251 Query: 162 GKSGAKGPQSAPGGIGNLGPPG 183 G GAKGP G GN GP G Sbjct: 1252 GPPGAKGPPGDDGPKGNPGPVG 1273 Score = 59.3 bits (142), Expect = 3e-09 Identities = 56/192 (29%), Positives = 69/192 (35%), Gaps = 31/192 (16%) Query: 4 GPAGSIGLGDV-GAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62 GP G G+G G + +K G + P + G GP G GP+G+PG PG Sbjct: 1225 GPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPG-DDGPKGNPGPVGFPGDPG---- 1279 Query: 63 KPMICIALALDHHTLYTPQAPSPATATGI-----RQPHSASLVPLSPLGPDLIPRPPRL- 116 P P PA G+ P P G P PP Sbjct: 1280 ----------------PPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKR 1323 Query: 117 --PLPLSHSWDSWDFLAFLESVGRTEPGEAGD-REKGPQGQPGPRGATGKSGAKGPQSAP 173 P + A E+ PG+ G +GP G+PGP G G G G Q P Sbjct: 1324 GPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLP 1383 Query: 174 GGIGNLGPPGEM 185 G G GPPG M Sbjct: 1384 GAAGQDGPPGPM 1395 Score = 58.5 bits (140), Expect = 5e-09 Identities = 62/198 (31%), Positives = 73/198 (36%), Gaps = 44/198 (22%) Query: 4 GPAGSIGL----GDVGAKAQKPG----GGRRDSIVPRTWEETEGIP--------KGPSGP 47 GP G GL G GAK PG G+ R + G+P KG GP Sbjct: 952 GPPGEQGLPGAAGKEGAKGD-PGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGP 1010 Query: 48 QGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSA--SLVPLSPL 105 QGP G G PG + S A + P P P G A P P Sbjct: 1011 QGPPGPVGSPGERGS--------AGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPA 1062 Query: 106 GPDLIPRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSG 165 G D + P LP P + PGE GD KG G+PG +G+ G G Sbjct: 1063 GRDGVQGPVGLPGPAGPAGS---------------PGEDGD--KGEIGEPGQKGSKGDKG 1105 Query: 166 AKGPQSAPGGIGNLGPPG 183 GP PG G +G PG Sbjct: 1106 ENGPPGPPGLQGPVGAPG 1123 Score = 55.8 bits (133), Expect = 3e-08 Identities = 59/211 (27%), Positives = 79/211 (37%), Gaps = 51/211 (24%) Query: 3 KGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIP-----KGPSGPQGPLGYPGPP 57 +GP G G KPG P+ +G P +GP GPQGP+G+PGP Sbjct: 843 RGPTGPRGSRGARGPTGKPG--------PKGTSGGDGPPGPPGERGPQGPQGPVGFPGPK 894 Query: 58 GV-----KDSKPMICIALALDHHTLYTPQA--PSPATATGIRQPHSASLVPLSPLGPDLI 110 G KD P T + + P P G + P + P+G Sbjct: 895 GPPGPPGKDGLPG---HPGQRGETGFQGKTGPPGPGGVVGPQGPTGET----GPIGERGH 947 Query: 111 PRPPRLP----LPLSHSWDSWDFLAFLESVGRTEPGEAGDREK----------GPQGQPG 156 P PP P LP + + + +PG G K G +G PG Sbjct: 948 PGPPGPPGEQGLPGAAGKEG----------AKGDPGPQGISGKDGPAGLRGFPGERGLPG 997 Query: 157 PRGATGKSGAKGPQSAPGGIGNLGPPGEMVT 187 +GA G G +GPQ PG +G+ G G T Sbjct: 998 AQGAPGLKGGEGPQGPPGPVGSPGERGSAGT 1028 Score = 54.3 bits (129), Expect = 9e-08 Identities = 64/216 (29%), Positives = 80/216 (37%), Gaps = 48/216 (22%) Query: 3 KGPAGSIGL----GDVGAKAQKPGGGRRDSIVPRTWEETEGIP--------KGPSGPQGP 50 +GP G +GL G VG G P+ +G P +G G G Sbjct: 489 RGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGG 548 Query: 51 LGYPGPPGVKDSKPMICI-ALALD--HHTLYTPQAP-SPATATGIRQPHS--------AS 98 G PG PG K + + L D H PQ P P G+R Sbjct: 549 RGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGE 608 Query: 99 LVPLSPLGPDLIPRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPR 158 P LGP P P P +A ++ PG G+ GPQG+PGP Sbjct: 609 AGPRGLLGPRGTPGAPGQP-----------GMAGVDG----PPGPKGNM--GPQGEPGP- 650 Query: 159 GATGKSGAKGPQSAPGGIGNLGPPGEMVTGKGVNGQ 194 G+ G GPQ PG G +GPPGE KG G+ Sbjct: 651 --PGQQGNPGPQGLPGPQGPIGPPGE----KGPQGK 680 Score = 54.3 bits (129), Expect = 9e-08 Identities = 64/207 (30%), Positives = 78/207 (37%), Gaps = 25/207 (12%) Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIP--KGPSGPQGPLGYPGPPGVK 60 GP G G G GA + G + R ++ G+P KG G +GP G PGPPG Sbjct: 532 GPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDD 591 Query: 61 DSK-------PMICIALALDHHTLY---TPQAPSPATATGIRQPHSASLVPLSPLGPDLI 110 + P A L TP AP G+ P P +GP Sbjct: 592 GMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPG----PKGNMGPQGE 647 Query: 111 PRPPRL---PLPLSHSWDSWDFLAFLESVGRTEPGEAG-DREKGPQGQPGPRGATGKSGA 166 P PP P P E + +PG AG GP G PG G +G+ GA Sbjct: 648 PGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGA 707 Query: 167 KGPQSAPGGIGNLGPPGEMVTGKGVNG 193 GP G IG GP G KG +G Sbjct: 708 LGPPGPQGPIGYPGPRGV----KGADG 730 Score = 54.3 bits (129), Expect = 9e-08 Identities = 58/191 (30%), Positives = 76/191 (39%), Gaps = 13/191 (6%) Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62 GP G GL G G + + G+ P +G P G +GP G G+PGPPG Sbjct: 898 GPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQG-PTGETGPIGERGHPGPPGPPGE 956 Query: 63 KPMICIALALDHHTLYTPQAPSPATA-TGIRQPHSASLVPLSPLGPDLI----PRPPRLP 117 + + A PQ S G+R +P + P L P+ P P Sbjct: 957 QGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGP 1016 Query: 118 LPLSHSWDSWDFLAFLESVGRT----EPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAP 173 + S + GR PG AG EKG G+ GP+G G+ G +GP P Sbjct: 1017 VGSPGERGSAGTAGPIGLPGRPGPQGPPGPAG--EKGAPGEKGPQGPAGRDGVQGPVGLP 1074 Query: 174 GGIGNLGPPGE 184 G G G PGE Sbjct: 1075 GPAGPAGSPGE 1085 Score = 52.4 bits (124), Expect = 4e-07 Identities = 54/183 (29%), Positives = 60/183 (32%), Gaps = 55/183 (30%) Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKD 61 +GP GS G G GA +K G PR G P+G G +GP G PGP G Sbjct: 810 QGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTG-PRGSRGARGPTGKPGPKG--- 865 Query: 62 SKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLS 121 T P G R P P GP P P P P Sbjct: 866 -----------------TSGGDGPPGPPGERGPQG-------PQGPVGFPGPKGPPGP-- 899 Query: 122 HSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGP 181 PG+ G G PG RG TG G GP G +G GP Sbjct: 900 -------------------PGK-----DGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGP 935 Query: 182 PGE 184 GE Sbjct: 936 TGE 938 Score = 50.8 bits (120), Expect = 1e-06 Identities = 51/160 (31%), Positives = 60/160 (37%), Gaps = 42/160 (26%) Query: 42 KGPSGPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPS-PATATGIRQPHSASLV 100 +GP GP GP G GPPG+ Q P+ P G R P + Sbjct: 402 EGPPGPAGPAGIMGPPGL---------------------QGPTGPPGDPGDRGPPGRPGL 440 Query: 101 PLSPLGPDLIPRPP--RLPLPLSHSWDSW----------DFLAFLESVG---RTEPGEAG 145 P G D +P PP L LP + D A L+ R PG G Sbjct: 441 P----GADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMG 496 Query: 146 -DREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGPPGE 184 GP G PG GA G+SG GPQ G G GP G+ Sbjct: 497 LTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGK 536 Score = 50.4 bits (119), Expect = 1e-06 Identities = 51/185 (27%), Positives = 66/185 (35%), Gaps = 61/185 (32%) Query: 3 KGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62 KGP G GL + PG ++ + E GP GPQGP+GYPGP GVK Sbjct: 675 KGPQGKPGLAGLPGADGPPGHPGKEG------QSGEKGALGPPGPQGPIGYPGPRGVKG- 727 Query: 63 KPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLSH 122 A G+R + G D P Sbjct: 728 -------------------------ADGVRGLKGSK----GEKGEDGFP----------- 747 Query: 123 SWDSWDFLAFLESVG-RTEPGEAGDREKGPQGQPGPRGATGKSGA---KGPQSAPGGIGN 178 F +G + + GE G + GP+G+ GP G G++G GP G G Sbjct: 748 --------GFKGDMGLKGDRGEVG--QIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGK 797 Query: 179 LGPPG 183 LG PG Sbjct: 798 LGVPG 802 Score = 50.1 bits (118), Expect = 2e-06 Identities = 58/219 (26%), Positives = 79/219 (36%), Gaps = 63/219 (28%) Query: 4 GPAGSIGL----GDVGAKAQKPGGGRRDSIVPRTWEETEGIP--------KGPSGPQGPL 51 GP G G+ G++G + G R + PR G P GP G GP Sbjct: 586 GPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQ 645 Query: 52 GYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIP 111 G PGPPG + + P P G + P + P GP P Sbjct: 646 GEPGPPGQQGN--------------------PGPQGLPGPQGP----IGPPGEKGPQGKP 681 Query: 112 RPPRLPL---PLSHSWDSWDFLAFLESVGRTEPGEAGDR-------EKGPQGQPGPRGAT 161 LP P H + G++G++ +GP G PGPRG Sbjct: 682 GLAGLPGADGPPGHPG---------------KEGQSGEKGALGPPGPQGPIGYPGPRGVK 726 Query: 162 GKSGAKGPQSAPGGIGNLGPPGEM--VTGKGVNGQVFQL 198 G G +G + + G G G PG + KG G+V Q+ Sbjct: 727 GADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQI 765 Score = 50.1 bits (118), Expect = 2e-06 Identities = 64/218 (29%), Positives = 80/218 (36%), Gaps = 54/218 (24%) Query: 4 GPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62 GP G++G G+ G Q+ G P+G GPQGP+G PG G + Sbjct: 637 GPKGNMGPQGEPGPPGQQGNPG----------------PQGLPGPQGPIGPPGEKGPQ-G 679 Query: 63 KPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLP----- 117 KP + D P P +G +L P P GP P P + Sbjct: 680 KPGLAGLPGADG----PPGHPGKEGQSG----EKGALGPPGPQGPIGYPGPRGVKGADGV 731 Query: 118 --LPLSHSWDSWD-FLAFLESVG----RTEPGEAGDREK----------GPQGQPGPRGA 160 L S D F F +G R E G+ G R + GP G PGP G Sbjct: 732 RGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQ 791 Query: 161 TGKSGAKGPQSAPGGIGNLGPPGEMVTG----KGVNGQ 194 G+ G G PG G GP G TG G NG+ Sbjct: 792 AGEKGKLGVPGLPGYPGRQGPKGS--TGFPGFPGANGE 827 Score = 50.1 bits (118), Expect = 2e-06 Identities = 55/196 (28%), Positives = 67/196 (34%), Gaps = 48/196 (24%) Query: 2 AKGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIP--KGPSGPQGPLGYPGPPGV 59 A+GP G G A KPG I E+ G+P G GP GP+G PG PG+ Sbjct: 1346 AEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQ--GLPGAAGQDGPPGPMGPPGLPGL 1403 Query: 60 KDSK--------PMICIALALDHHTLYTPQAPSPATATGIRQPHSASLV-PLSPLGPDLI 110 K P + + P T + P PLGP Sbjct: 1404 KGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGP--- 1460 Query: 111 PRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQ 170 P PP LP P KG +G GP G G SG GP Sbjct: 1461 PGPPGLPGPQG--------------------------PKGNKGSTGPAGQKGDSGLPGPP 1494 Query: 171 SAPGGIGNLGPPGEMV 186 +P GPPGE++ Sbjct: 1495 GSP------GPPGEVI 1504 Score = 42.7 bits (99), Expect = 3e-04 Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 2/55 (3%) Query: 131 AFLESVGRTEPG--EAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGPPG 183 A+ E + EP E G +GP G GP G G G +GP PG G+ GPPG Sbjct: 382 AYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPG 436 >gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo sapiens] Length = 1806 Score = 64.7 bits (156), Expect = 7e-11 Identities = 62/189 (32%), Positives = 76/189 (40%), Gaps = 34/189 (17%) Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKD 61 KG G +G GD G + PG +D + E+ + GP GP G G PGPPG K Sbjct: 1305 KGNPGPVGFPGDPGPPGE-PGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPG-KR 1362 Query: 62 SKPMICIALALDHHTLYTPQAPS--PATATGIRQPHSASLVPLSPLGPDLIPRPPRL--- 116 P A +A + P TG P+ P GP P P L Sbjct: 1363 GPPGAAGAEGRQGEKGAKGEAGAEGPPGKTG----------PVGPQGPAGKPGPEGLRGI 1412 Query: 117 PLPLSHSWDSWDFLAFLESVGRTEPGEAG-DREKGPQGQPGPRGATGKSGAKGPQSAPGG 175 P P+ + PG AG D GP G PG G G G+KG + PG Sbjct: 1413 PGPVGE---------------QGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGL 1457 Query: 176 IGNLGPPGE 184 IG +GPPGE Sbjct: 1458 IGLIGPPGE 1466 Score = 64.3 bits (155), Expect = 9e-11 Identities = 57/186 (30%), Positives = 71/186 (38%), Gaps = 54/186 (29%) Query: 4 GPAGSIG----LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGV 59 GPAGS G G++G QK G ++ E P GP G QGP+G PG G Sbjct: 1117 GPAGSPGEDGDKGEIGEPGQKGSKG----------DKGENGPPGPPGLQGPVGAPGIAG- 1165 Query: 60 KDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLP 119 D +P P+ + P P+G +P PP Sbjct: 1166 GDGEP--------------GPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPG---- 1207 Query: 120 LSHSWDSWDFLAFLESVGRTEPGEAGD-REKGPQGQPGPRGATGKSGAKGPQSAPGGIGN 178 E GE GD GP G PGPRG G +GA GPQ PG +G+ Sbjct: 1208 --------------------EKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGS 1247 Query: 179 LGPPGE 184 +G GE Sbjct: 1248 VGGVGE 1253 Score = 60.5 bits (145), Expect = 1e-09 Identities = 61/202 (30%), Positives = 76/202 (37%), Gaps = 65/202 (32%) Query: 3 KGPAGSIGL----GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPG 58 +GP G+ G+ G+ G + Q+ G++ E G P GP GP G G PGPPG Sbjct: 1155 QGPVGAPGIAGGDGEPGPRGQQGMFGQKGD------EGARGFP-GPPGPIGLQGLPGPPG 1207 Query: 59 VKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPL 118 K D + P P P P P G D PP Sbjct: 1208 EKGENG--------DVGPMGPPGPPGPRG-------------PQGPNGADGPQGPP---- 1242 Query: 119 PLSHSWDSWDFLAFLESVG----RTEPGEAGD-------------REKGPQGQPGPRGAT 161 + SVG + EPGEAG+ E+G +G+ GP GA Sbjct: 1243 ------------GSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAA 1290 Query: 162 GKSGAKGPQSAPGGIGNLGPPG 183 G GAKGP G GN GP G Sbjct: 1291 GPPGAKGPPGDDGPKGNPGPVG 1312 Score = 59.3 bits (142), Expect = 3e-09 Identities = 56/192 (29%), Positives = 69/192 (35%), Gaps = 31/192 (16%) Query: 4 GPAGSIGLGDV-GAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62 GP G G+G G + +K G + P + G GP G GP+G+PG PG Sbjct: 1264 GPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPG-DDGPKGNPGPVGFPGDPG---- 1318 Query: 63 KPMICIALALDHHTLYTPQAPSPATATGI-----RQPHSASLVPLSPLGPDLIPRPPRL- 116 P P PA G+ P P G P PP Sbjct: 1319 ----------------PPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKR 1362 Query: 117 --PLPLSHSWDSWDFLAFLESVGRTEPGEAGD-REKGPQGQPGPRGATGKSGAKGPQSAP 173 P + A E+ PG+ G +GP G+PGP G G G G Q P Sbjct: 1363 GPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLP 1422 Query: 174 GGIGNLGPPGEM 185 G G GPPG M Sbjct: 1423 GAAGQDGPPGPM 1434 Score = 58.5 bits (140), Expect = 5e-09 Identities = 62/198 (31%), Positives = 73/198 (36%), Gaps = 44/198 (22%) Query: 4 GPAGSIGL----GDVGAKAQKPG----GGRRDSIVPRTWEETEGIP--------KGPSGP 47 GP G GL G GAK PG G+ R + G+P KG GP Sbjct: 991 GPPGEQGLPGAAGKEGAKGD-PGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGP 1049 Query: 48 QGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSA--SLVPLSPL 105 QGP G G PG + S A + P P P G A P P Sbjct: 1050 QGPPGPVGSPGERGS--------AGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPA 1101 Query: 106 GPDLIPRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSG 165 G D + P LP P + PGE GD KG G+PG +G+ G G Sbjct: 1102 GRDGVQGPVGLPGPAGPAGS---------------PGEDGD--KGEIGEPGQKGSKGDKG 1144 Query: 166 AKGPQSAPGGIGNLGPPG 183 GP PG G +G PG Sbjct: 1145 ENGPPGPPGLQGPVGAPG 1162 Score = 55.8 bits (133), Expect = 3e-08 Identities = 59/211 (27%), Positives = 79/211 (37%), Gaps = 51/211 (24%) Query: 3 KGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIP-----KGPSGPQGPLGYPGPP 57 +GP G G KPG P+ +G P +GP GPQGP+G+PGP Sbjct: 882 RGPTGPRGSRGARGPTGKPG--------PKGTSGGDGPPGPPGERGPQGPQGPVGFPGPK 933 Query: 58 GV-----KDSKPMICIALALDHHTLYTPQA--PSPATATGIRQPHSASLVPLSPLGPDLI 110 G KD P T + + P P G + P + P+G Sbjct: 934 GPPGPPGKDGLPG---HPGQRGETGFQGKTGPPGPGGVVGPQGPTGET----GPIGERGH 986 Query: 111 PRPPRLP----LPLSHSWDSWDFLAFLESVGRTEPGEAGDREK----------GPQGQPG 156 P PP P LP + + + +PG G K G +G PG Sbjct: 987 PGPPGPPGEQGLPGAAGKEG----------AKGDPGPQGISGKDGPAGLRGFPGERGLPG 1036 Query: 157 PRGATGKSGAKGPQSAPGGIGNLGPPGEMVT 187 +GA G G +GPQ PG +G+ G G T Sbjct: 1037 AQGAPGLKGGEGPQGPPGPVGSPGERGSAGT 1067 Score = 54.3 bits (129), Expect = 9e-08 Identities = 64/216 (29%), Positives = 80/216 (37%), Gaps = 48/216 (22%) Query: 3 KGPAGSIGL----GDVGAKAQKPGGGRRDSIVPRTWEETEGIP--------KGPSGPQGP 50 +GP G +GL G VG G P+ +G P +G G G Sbjct: 528 RGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGG 587 Query: 51 LGYPGPPGVKDSKPMICI-ALALD--HHTLYTPQAP-SPATATGIRQPHS--------AS 98 G PG PG K + + L D H PQ P P G+R Sbjct: 588 RGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGE 647 Query: 99 LVPLSPLGPDLIPRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPR 158 P LGP P P P +A ++ PG G+ GPQG+PGP Sbjct: 648 AGPRGLLGPRGTPGAPGQP-----------GMAGVDG----PPGPKGNM--GPQGEPGP- 689 Query: 159 GATGKSGAKGPQSAPGGIGNLGPPGEMVTGKGVNGQ 194 G+ G GPQ PG G +GPPGE KG G+ Sbjct: 690 --PGQQGNPGPQGLPGPQGPIGPPGE----KGPQGK 719 Score = 54.3 bits (129), Expect = 9e-08 Identities = 64/207 (30%), Positives = 78/207 (37%), Gaps = 25/207 (12%) Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIP--KGPSGPQGPLGYPGPPGVK 60 GP G G G GA + G + R ++ G+P KG G +GP G PGPPG Sbjct: 571 GPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDD 630 Query: 61 DSK-------PMICIALALDHHTLY---TPQAPSPATATGIRQPHSASLVPLSPLGPDLI 110 + P A L TP AP G+ P P +GP Sbjct: 631 GMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPG----PKGNMGPQGE 686 Query: 111 PRPPRL---PLPLSHSWDSWDFLAFLESVGRTEPGEAG-DREKGPQGQPGPRGATGKSGA 166 P PP P P E + +PG AG GP G PG G +G+ GA Sbjct: 687 PGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGA 746 Query: 167 KGPQSAPGGIGNLGPPGEMVTGKGVNG 193 GP G IG GP G KG +G Sbjct: 747 LGPPGPQGPIGYPGPRGV----KGADG 769 Score = 54.3 bits (129), Expect = 9e-08 Identities = 58/191 (30%), Positives = 76/191 (39%), Gaps = 13/191 (6%) Query: 4 GPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62 GP G GL G G + + G+ P +G P G +GP G G+PGPPG Sbjct: 937 GPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQG-PTGETGPIGERGHPGPPGPPGE 995 Query: 63 KPMICIALALDHHTLYTPQAPSPATA-TGIRQPHSASLVPLSPLGPDLI----PRPPRLP 117 + + A PQ S G+R +P + P L P+ P P Sbjct: 996 QGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGP 1055 Query: 118 LPLSHSWDSWDFLAFLESVGRT----EPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAP 173 + S + GR PG AG EKG G+ GP+G G+ G +GP P Sbjct: 1056 VGSPGERGSAGTAGPIGLPGRPGPQGPPGPAG--EKGAPGEKGPQGPAGRDGVQGPVGLP 1113 Query: 174 GGIGNLGPPGE 184 G G G PGE Sbjct: 1114 GPAGPAGSPGE 1124 Score = 52.4 bits (124), Expect = 4e-07 Identities = 54/183 (29%), Positives = 60/183 (32%), Gaps = 55/183 (30%) Query: 3 KGPAGSIGL-GDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKD 61 +GP GS G G GA +K G PR G P+G G +GP G PGP G Sbjct: 849 QGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTG-PRGSRGARGPTGKPGPKG--- 904 Query: 62 SKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLS 121 T P G R P P GP P P P P Sbjct: 905 -----------------TSGGDGPPGPPGERGPQG-------PQGPVGFPGPKGPPGP-- 938 Query: 122 HSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGP 181 PG+ G G PG RG TG G GP G +G GP Sbjct: 939 -------------------PGK-----DGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGP 974 Query: 182 PGE 184 GE Sbjct: 975 TGE 977 Score = 50.8 bits (120), Expect = 1e-06 Identities = 51/160 (31%), Positives = 60/160 (37%), Gaps = 42/160 (26%) Query: 42 KGPSGPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPS-PATATGIRQPHSASLV 100 +GP GP GP G GPPG+ Q P+ P G R P + Sbjct: 441 EGPPGPAGPAGIMGPPGL---------------------QGPTGPPGDPGDRGPPGRPGL 479 Query: 101 PLSPLGPDLIPRPP--RLPLPLSHSWDSW----------DFLAFLESVG---RTEPGEAG 145 P G D +P PP L LP + D A L+ R PG G Sbjct: 480 P----GADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMG 535 Query: 146 -DREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGPPGE 184 GP G PG GA G+SG GPQ G G GP G+ Sbjct: 536 LTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGK 575 Score = 50.4 bits (119), Expect = 1e-06 Identities = 51/185 (27%), Positives = 66/185 (35%), Gaps = 61/185 (32%) Query: 3 KGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62 KGP G GL + PG ++ + E GP GPQGP+GYPGP GVK Sbjct: 714 KGPQGKPGLAGLPGADGPPGHPGKEG------QSGEKGALGPPGPQGPIGYPGPRGVKG- 766 Query: 63 KPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLSH 122 A G+R + G D P Sbjct: 767 -------------------------ADGVRGLKGSK----GEKGEDGFP----------- 786 Query: 123 SWDSWDFLAFLESVG-RTEPGEAGDREKGPQGQPGPRGATGKSGA---KGPQSAPGGIGN 178 F +G + + GE G + GP+G+ GP G G++G GP G G Sbjct: 787 --------GFKGDMGLKGDRGEVG--QIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGK 836 Query: 179 LGPPG 183 LG PG Sbjct: 837 LGVPG 841 Score = 50.1 bits (118), Expect = 2e-06 Identities = 58/219 (26%), Positives = 79/219 (36%), Gaps = 63/219 (28%) Query: 4 GPAGSIGL----GDVGAKAQKPGGGRRDSIVPRTWEETEGIP--------KGPSGPQGPL 51 GP G G+ G++G + G R + PR G P GP G GP Sbjct: 625 GPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQ 684 Query: 52 GYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIP 111 G PGPPG + + P P G + P + P GP P Sbjct: 685 GEPGPPGQQGN--------------------PGPQGLPGPQGP----IGPPGEKGPQGKP 720 Query: 112 RPPRLPL---PLSHSWDSWDFLAFLESVGRTEPGEAGDR-------EKGPQGQPGPRGAT 161 LP P H + G++G++ +GP G PGPRG Sbjct: 721 GLAGLPGADGPPGHPG---------------KEGQSGEKGALGPPGPQGPIGYPGPRGVK 765 Query: 162 GKSGAKGPQSAPGGIGNLGPPGEM--VTGKGVNGQVFQL 198 G G +G + + G G G PG + KG G+V Q+ Sbjct: 766 GADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQI 804 Score = 50.1 bits (118), Expect = 2e-06 Identities = 64/218 (29%), Positives = 80/218 (36%), Gaps = 54/218 (24%) Query: 4 GPAGSIG-LGDVGAKAQKPGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGVKDS 62 GP G++G G+ G Q+ G P+G GPQGP+G PG G + Sbjct: 676 GPKGNMGPQGEPGPPGQQGNPG----------------PQGLPGPQGPIGPPGEKGPQ-G 718 Query: 63 KPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLP----- 117 KP + D P P +G +L P P GP P P + Sbjct: 719 KPGLAGLPGADG----PPGHPGKEGQSG----EKGALGPPGPQGPIGYPGPRGVKGADGV 770 Query: 118 --LPLSHSWDSWD-FLAFLESVG----RTEPGEAGDREK----------GPQGQPGPRGA 160 L S D F F +G R E G+ G R + GP G PGP G Sbjct: 771 RGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQ 830 Query: 161 TGKSGAKGPQSAPGGIGNLGPPGEMVTG----KGVNGQ 194 G+ G G PG G GP G TG G NG+ Sbjct: 831 AGEKGKLGVPGLPGYPGRQGPKGS--TGFPGFPGANGE 866 Score = 50.1 bits (118), Expect = 2e-06 Identities = 55/196 (28%), Positives = 67/196 (34%), Gaps = 48/196 (24%) Query: 2 AKGPAGSIGLGDVGAKAQKPGGGRRDSIVPRTWEETEGIP--KGPSGPQGPLGYPGPPGV 59 A+GP G G A KPG I E+ G+P G GP GP+G PG PG+ Sbjct: 1385 AEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQ--GLPGAAGQDGPPGPMGPPGLPGL 1442 Query: 60 KDSK--------PMICIALALDHHTLYTPQAPSPATATGIRQPHSASLV-PLSPLGPDLI 110 K P + + P T + P PLGP Sbjct: 1443 KGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGP--- 1499 Query: 111 PRPPRLPLPLSHSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPGPRGATGKSGAKGPQ 170 P PP LP P KG +G GP G G SG GP Sbjct: 1500 PGPPGLPGPQG--------------------------PKGNKGSTGPAGQKGDSGLPGPP 1533 Query: 171 SAPGGIGNLGPPGEMV 186 +P GPPGE++ Sbjct: 1534 GSP------GPPGEVI 1543 Score = 42.7 bits (99), Expect = 3e-04 Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 2/55 (3%) Query: 131 AFLESVGRTEPG--EAGDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGPPG 183 A+ E + EP E G +GP G GP G G G +GP PG G+ GPPG Sbjct: 421 AYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPG 475 >gi|50511941 EMI domain containing 1 [Homo sapiens] Length = 443 Score = 64.7 bits (156), Expect = 7e-11 Identities = 54/158 (34%), Positives = 66/158 (41%), Gaps = 36/158 (22%) Query: 41 PKGPSGPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAP--SPATATGIRQPHSAS 98 PKG +G +GP+G GPPG PQ P SP A + P Sbjct: 209 PKGDAGSRGPMGMRGPPG---------------------PQGPPGSPGRAGAVGTPGERG 247 Query: 99 LVPLSPLGPDLIPRPPRLPLPLS--HSWDSWDFLAFLESVGRTEPGEAGDREKGPQGQPG 156 P P GP P PP P P+ H+ S L + T +GP G PG Sbjct: 248 --PPGPPGP---PGPPGPPAPVGPPHARISQHGDPLLSN---TFTETNNHWPQGPTGPPG 299 Query: 157 PRGATGKSGAKGPQSAPGGIGNLGPPGEMVTG-KGVNG 193 P G G G GP PG G++GPPG TG KG++G Sbjct: 300 PPGPMGPPGPPGPTGVPGSPGHIGPPGP--TGPKGISG 335 Score = 57.0 bits (136), Expect = 1e-08 Identities = 54/183 (29%), Positives = 76/183 (41%), Gaps = 35/183 (19%) Query: 3 KGPAGSIG-LGDVGAKAQK--PGGGRRDSIVPRTWEETEGIPKGPSGPQGPLGYPGPPGV 59 KG AGS G +G G + PG R V E P GP GP GP GPP Sbjct: 210 KGDAGSRGPMGMRGPPGPQGPPGSPGRAGAVGTPGERGPPGPPGPPGPPGPPAPVGPPHA 269 Query: 60 KDSK---PMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRL 116 + S+ P++ ++ + PQ P+ P P+GP P P + Sbjct: 270 RISQHGDPLLSNTFTETNN--HWPQGPTGPPG------------PPGPMGPPGPPGPTGV 315 Query: 117 PLPLSHSWDSWDFLAFLESVGRTEP----GEAGDR-EKGPQGQPGPRGATGKSGAKGPQS 171 P H + G T P G G++ E+G +G+PGP+G+ G+ G GP+ Sbjct: 316 PGSPGH----------IGPPGPTGPKGISGHPGEKGERGLRGEPGPQGSAGQRGEPGPKG 365 Query: 172 APG 174 PG Sbjct: 366 DPG 368 Score = 40.4 bits (93), Expect = 0.001 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Query: 141 PGEAGDREK-GPQGQPGPRGATGKSGAKGPQSAPGGIGNLGPPG 183 PG+ G +++ G G PGP G G +G++GP G G GPPG Sbjct: 189 PGDGGLQDQVGAWGLPGPTGPKGDAGSRGPMGMRGPPGPQGPPG 232 Score = 37.0 bits (84), Expect = 0.016 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 3/38 (7%) Query: 150 GPQGQPGPRGATGKSGAKGPQ---SAPGGIGNLGPPGE 184 GP+G G RG G G GPQ +PG G +G PGE Sbjct: 208 GPKGDAGSRGPMGMRGPPGPQGPPGSPGRAGAVGTPGE 245 >gi|239754143 PREDICTED: similar to cytochrome c oxidase subunit II [Homo sapiens] Length = 64 Score = 63.9 bits (154), Expect = 1e-10 Identities = 32/48 (66%), Positives = 38/48 (79%) Query: 198 LRDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245 + + +TFHDH L+I+FLISSLVLY ISLIL LT+ S I AQEIETV Sbjct: 17 IEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQEIETV 64 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.314 0.139 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,595,220 Number of Sequences: 37866 Number of extensions: 945963 Number of successful extensions: 28853 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 261 Number of HSP's successfully gapped in prelim test: 421 Number of HSP's that attempted gapping in prelim test: 4325 Number of HSP's gapped (non-prelim): 6058 length of query: 245 length of database: 18,247,518 effective HSP length: 100 effective length of query: 145 effective length of database: 14,460,918 effective search space: 2096833110 effective search space used: 2096833110 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.