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Search of human proteins with 239747723
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747723 PREDICTED: hypothetical protein XP_002348235 [Homo
sapiens]
(79 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753154 PREDICTED: hypothetical protein [Homo sapiens] 151 9e-38
gi|239747723 PREDICTED: hypothetical protein XP_002348235 [Homo ... 151 9e-38
gi|239741589 PREDICTED: hypothetical protein XP_002342258 [Homo ... 151 9e-38
gi|19923050 death effector domain-containing DNA binding protei... 35 0.010
gi|169213067 PREDICTED: hypothetical protein [Homo sapiens] 32 0.084
gi|239753673 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|239757909 PREDICTED: hypothetical protein [Homo sapiens] 30 0.32
gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B ... 30 0.42
gi|239757960 PREDICTED: hypothetical protein [Homo sapiens] 30 0.54
gi|239753405 PREDICTED: hypothetical protein [Homo sapiens] 30 0.54
gi|239747975 PREDICTED: hypothetical protein XP_002346485 [Homo ... 30 0.54
gi|239741872 PREDICTED: hypothetical protein XP_002342329 [Homo ... 30 0.54
gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo s... 30 0.54
gi|78000163 sorbin and SH3 domain containing 1 isoform 3 [Homo s... 30 0.54
gi|50726960 phosphatidylinositol (4,5) bisphosphate 5-phosphatas... 30 0.54
gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting ... 29 0.71
gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting ... 29 0.71
gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting ... 29 0.71
gi|239752421 PREDICTED: hypothetical protein [Homo sapiens] 29 0.71
gi|239746936 PREDICTED: hypothetical protein [Homo sapiens] 29 0.71
gi|154146199 sal-like 3 [Homo sapiens] 29 0.71
gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting ... 29 0.93
gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting ... 29 0.93
gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting ... 29 0.93
gi|239757467 PREDICTED: hypothetical protein [Homo sapiens] 29 0.93
gi|239751993 PREDICTED: hypothetical protein [Homo sapiens] 29 0.93
gi|239746476 PREDICTED: hypothetical protein [Homo sapiens] 29 0.93
gi|89040432 PREDICTED: hypothetical protein [Homo sapiens] 29 0.93
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 29 0.93
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 29 0.93
>gi|239753154 PREDICTED: hypothetical protein [Homo sapiens]
Length = 79
Score = 151 bits (382), Expect = 9e-38
Identities = 79/79 (100%), Positives = 79/79 (100%)
Query: 1 MEMSSPERRRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQLSL 60
MEMSSPERRRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQLSL
Sbjct: 1 MEMSSPERRRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQLSL 60
Query: 61 RSIQLSTCLMRMEMTLKSE 79
RSIQLSTCLMRMEMTLKSE
Sbjct: 61 RSIQLSTCLMRMEMTLKSE 79
>gi|239747723 PREDICTED: hypothetical protein XP_002348235 [Homo
sapiens]
Length = 79
Score = 151 bits (382), Expect = 9e-38
Identities = 79/79 (100%), Positives = 79/79 (100%)
Query: 1 MEMSSPERRRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQLSL 60
MEMSSPERRRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQLSL
Sbjct: 1 MEMSSPERRRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQLSL 60
Query: 61 RSIQLSTCLMRMEMTLKSE 79
RSIQLSTCLMRMEMTLKSE
Sbjct: 61 RSIQLSTCLMRMEMTLKSE 79
>gi|239741589 PREDICTED: hypothetical protein XP_002342258 [Homo
sapiens]
Length = 79
Score = 151 bits (382), Expect = 9e-38
Identities = 79/79 (100%), Positives = 79/79 (100%)
Query: 1 MEMSSPERRRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQLSL 60
MEMSSPERRRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQLSL
Sbjct: 1 MEMSSPERRRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQLSL 60
Query: 61 RSIQLSTCLMRMEMTLKSE 79
RSIQLSTCLMRMEMTLKSE
Sbjct: 61 RSIQLSTCLMRMEMTLKSE 79
>gi|19923050 death effector domain-containing DNA binding protein 2
[Homo sapiens]
Length = 326
Score = 35.4 bits (80), Expect = 0.010
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 5 SPERRRPSASLSRA------AGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQL 58
S RRR S+S + + GS P+ +RR P A RR RGAP A QQ+++ +
Sbjct: 129 SCRRRRQSSSSANSQQGQWETGSPPTKRQRRSRGRPSGGARRRRRGAPAAPQQQSEPARP 188
Query: 59 SLRSIQLSTCLMRMEM 74
S S TC +R+ +
Sbjct: 189 S--SEGKVTCDIRLRV 202
>gi|169213067 PREDICTED: hypothetical protein [Homo sapiens]
Length = 303
Score = 32.3 bits (72), Expect = 0.084
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 6 PERRRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQ 50
P RPS + R G PS R + SR P ALRR+ P AG+
Sbjct: 116 PRPLRPSRAAPRLRGEEPSLLRPQLSRRP--RALRRSTRVPAAGK 158
>gi|239753673 PREDICTED: hypothetical protein [Homo sapiens]
Length = 380
Score = 30.8 bits (68), Expect = 0.24
Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 5 SPERRRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQ 54
+P RR L R A P A RRRS P R G PG G+ R Q
Sbjct: 183 APGARRSRPRLLRPASPPPRPAPRRRSTAP-----RHEGGRPGRGRTRRQ 227
>gi|239757909 PREDICTED: hypothetical protein [Homo sapiens]
Length = 127
Score = 30.4 bits (67), Expect = 0.32
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 13 ASLSRAAGSAP--SAARRRRSREPGVMALRRARGAPGAGQQRAQQR 56
A LSR G +P S A+ RR +EPG + L + + G GQ+R R
Sbjct: 62 AELSREGGGSPLQSEAQGRR-QEPGALFLEQRQALRGRGQERRGHR 106
>gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B
subunit [Homo sapiens]
Length = 2339
Score = 30.0 bits (66), Expect = 0.42
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 7 ERRRPSASLSRAAGSAPSAARRRRSREPGVMALRR--ARGAPGAGQQRAQQRQLSLR 61
ER RP S S+ A + P AR R R PG RR RG+P +R +R + R
Sbjct: 884 ERPRPHRSHSKEA-AGPPEARSERGRGPGPEGGRRHHRRGSPEEAAEREPRRHRAHR 939
>gi|239757960 PREDICTED: hypothetical protein [Homo sapiens]
Length = 292
Score = 29.6 bits (65), Expect = 0.54
Identities = 17/64 (26%), Positives = 26/64 (40%)
Query: 7 ERRRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQLSLRSIQLS 66
E RR + G+ PSA R +P + RG PG GQ A + R + +
Sbjct: 198 EARRSALQQLHGGGNRPSAPSRVAVEDPWLEVSSSGRGGPGRGQGLAGSQARGTRDPEAA 257
Query: 67 TCLM 70
++
Sbjct: 258 QAML 261
>gi|239753405 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 29.6 bits (65), Expect = 0.54
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 6 PERRRPSA--SLSRAAGSAPSAARRRRSREPGVMALR 40
P R+RP A + +RA+ + P A+RR R R G+ A R
Sbjct: 143 PPRQRPGAGTAAARASRAGPRASRRGRGRGRGLQAAR 179
>gi|239747975 PREDICTED: hypothetical protein XP_002346485 [Homo
sapiens]
Length = 219
Score = 29.6 bits (65), Expect = 0.54
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 6 PERRRPSA--SLSRAAGSAPSAARRRRSREPGVMALR 40
P R+RP A + +RA+ + P A+RR R R G+ A R
Sbjct: 143 PPRQRPGAGTAAARASRAGPRASRRGRGRGRGLQAAR 179
>gi|239741872 PREDICTED: hypothetical protein XP_002342329 [Homo
sapiens]
Length = 219
Score = 29.6 bits (65), Expect = 0.54
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 6 PERRRPSA--SLSRAAGSAPSAARRRRSREPGVMALR 40
P R+RP A + +RA+ + P A+RR R R G+ A R
Sbjct: 143 PPRQRPGAGTAAARASRAGPRASRRGRGRGRGLQAAR 179
>gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo
sapiens]
Length = 1151
Score = 29.6 bits (65), Expect = 0.54
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 2 EMSSPERRRPSASLSRA-AGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQLS 59
++++PE RP L A GS R R G A R+A G+ Q +AQQR+++
Sbjct: 1027 DLNTPEESRPGKPLGSAFPGSEAEQTERHRG---GEQAGRKAARRGGSQQPQAQQRRVT 1082
>gi|78000163 sorbin and SH3 domain containing 1 isoform 3 [Homo
sapiens]
Length = 1292
Score = 29.6 bits (65), Expect = 0.54
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 2 EMSSPERRRPSASLSRA-AGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQLS 59
++++PE RP L A GS R R G A R+A G+ Q +AQQR+++
Sbjct: 1168 DLNTPEESRPGKPLGSAFPGSEAEQTERHRG---GEQAGRKAARRGGSQQPQAQQRRVT 1223
>gi|50726960 phosphatidylinositol (4,5) bisphosphate 5-phosphatase,
A [Homo sapiens]
Length = 638
Score = 29.6 bits (65), Expect = 0.54
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 10/66 (15%)
Query: 1 MEMSSPERRRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQLSL 60
+E+ +P+ R PS P ++R RSR PG+ P + ++R R S
Sbjct: 498 LELLAPKSRSPS----------PGKSKRHRSRSPGLARFPGLALRPSSRERRGASRSPSP 547
Query: 61 RSIQLS 66
+S +LS
Sbjct: 548 QSRRLS 553
>gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 6 [Homo sapiens]
Length = 562
Score = 29.3 bits (64), Expect = 0.71
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 13 ASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQ 57
A+ SR G+AP R S+ G + R RGA G QQ+ + Q
Sbjct: 506 AAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGQ 550
>gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 3 [Homo sapiens]
Length = 527
Score = 29.3 bits (64), Expect = 0.71
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 13 ASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQ 57
A+ SR G+AP R S+ G + R RGA G QQ+ + Q
Sbjct: 471 AAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGQ 515
>gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 2 [Homo sapiens]
Length = 464
Score = 29.3 bits (64), Expect = 0.71
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 13 ASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQ 57
A+ SR G+AP R S+ G + R RGA G QQ+ + Q
Sbjct: 408 AAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGQ 452
>gi|239752421 PREDICTED: hypothetical protein [Homo sapiens]
Length = 127
Score = 29.3 bits (64), Expect = 0.71
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 13 ASLSRAAGSAPSAARRR-RSREPGVMALRRARGAPGAGQQRAQQR 56
A L+R G +P + + R +EPG + L + + G GQ+R R
Sbjct: 62 AELAREGGGSPLQSEAQGRQQEPGALFLEQRQALRGRGQERRGHR 106
>gi|239746936 PREDICTED: hypothetical protein [Homo sapiens]
Length = 127
Score = 29.3 bits (64), Expect = 0.71
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 13 ASLSRAAGSAPSAARRR-RSREPGVMALRRARGAPGAGQQRAQQR 56
A L+R G +P + + R +EPG + L + + G GQ+R R
Sbjct: 62 AELAREGGGSPLQSEAQGRQQEPGALFLEQRQALRGRGQERRGHR 106
>gi|154146199 sal-like 3 [Homo sapiens]
Length = 1300
Score = 29.3 bits (64), Expect = 0.71
Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 7 ERRRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGA 48
+R P SLS AA APSA S+ PG+ AL + GAP A
Sbjct: 234 QRPPPRPSLSPAA--APSAPGPAPSQLPGLAALPLSAGAPAA 273
>gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 4 [Homo sapiens]
Length = 588
Score = 28.9 bits (63), Expect = 0.93
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 13 ASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQR 52
A+ SR G+AP R S+ G + R RGA G QQ+
Sbjct: 471 AAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQ 510
>gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 5 [Homo sapiens]
Length = 561
Score = 28.9 bits (63), Expect = 0.93
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 13 ASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQR 52
A+ SR G+AP R S+ G + R RGA G QQ+
Sbjct: 506 AAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQ 545
>gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 1 [Homo sapiens]
Length = 623
Score = 28.9 bits (63), Expect = 0.93
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 13 ASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQR 52
A+ SR G+AP R S+ G + R RGA G QQ+
Sbjct: 506 AAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQ 545
>gi|239757467 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 28.9 bits (63), Expect = 0.93
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 10 RPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPG 47
RP+ +RAA +AP + R+ + RRAR +PG
Sbjct: 96 RPAGLAARAAAAAPRSLRKPSPSPSPSLRRRRARNSPG 133
>gi|239751993 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 28.9 bits (63), Expect = 0.93
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 10 RPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPG 47
RP+ +RAA +AP + R+ + RRAR +PG
Sbjct: 96 RPAGLAARAAAAAPRSLRKPSPSPSPSLRRRRARNSPG 133
>gi|239746476 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 28.9 bits (63), Expect = 0.93
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 10 RPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPG 47
RP+ +RAA +AP + R+ + RRAR +PG
Sbjct: 96 RPAGLAARAAAAAPRSLRKPSPSPSPSLRRRRARNSPG 133
>gi|89040432 PREDICTED: hypothetical protein [Homo sapiens]
Length = 212
Score = 28.9 bits (63), Expect = 0.93
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 2 EMSSPERRRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGA 48
E P R P + SR ++P+A+ R RSR + GAPG+
Sbjct: 105 EAERPRRPEPGGARSRPVAASPAASSRARSRP------ESSPGAPGS 145
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 28.9 bits (63), Expect = 0.93
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 8 RRRPSASLSRAAGSAPSAARRRRSREPGVMAL-------RRARGAPGAGQQRAQQRQLSL 60
RRR S + +A SAP A RR R P + A+ R AP G A+QR +
Sbjct: 2006 RRRSELSSAESAASAPQGASPRRGR-PALPAVFLCSSRCEELRAAPRQGPAPARQRPPAA 2064
Query: 61 R 61
R
Sbjct: 2065 R 2065
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 28.9 bits (63), Expect = 0.93
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 9 RRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQR 56
R P + R+ P+ RR RSR P V R P ++R++ R
Sbjct: 1926 RTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSR 1973
Score = 26.2 bits (56), Expect = 6.0
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 8 RRRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQLSLRSIQ 64
R +A R+ P+ RSR P RR+R A G+ R+ QR+ RS Q
Sbjct: 485 RSPATAKRGRSRSRTPTKRGHSRSRSP---QWRRSRSAQRWGRSRSPQRRGRSRSPQ 538
Score = 26.2 bits (56), Expect = 6.0
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 4 SSPERRRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQLSLRS 62
S E+ R + R+ S ++ RR+RSR RR RG G R+ RQ S R+
Sbjct: 1777 SRREKTRTTRRRDRSGSSQSTSRRRQRSRSRS-RVTRRRRGGSGY-HSRSPARQESSRT 1833
Score = 25.8 bits (55), Expect = 7.9
Identities = 20/58 (34%), Positives = 26/58 (44%)
Query: 5 SPERRRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQLSLRS 62
+P +R S S S + SA R RSR P R+ PG + R QR+ RS
Sbjct: 499 TPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRS 556
Score = 25.8 bits (55), Expect = 7.9
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 9 RRPSASLSRAA---GSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQR 56
R P SR+A G + S RR RSR P R+R G+ R+ +R
Sbjct: 509 RSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARR 559
Score = 25.8 bits (55), Expect = 7.9
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 8 RRRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPG---AGQQRAQQR 56
RR PS S A + S+ RRR + P R +P G QR++ R
Sbjct: 1725 RRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSR 1776
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.122 0.325
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,899,660
Number of Sequences: 37866
Number of extensions: 118988
Number of successful extensions: 1374
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 1240
Number of HSP's gapped (non-prelim): 217
length of query: 79
length of database: 18,247,518
effective HSP length: 51
effective length of query: 28
effective length of database: 16,316,352
effective search space: 456857856
effective search space used: 456857856
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.