BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239747543 PREDICTED: hypothetical protein XP_002347646 [Homo sapiens] (80 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239747543 PREDICTED: hypothetical protein XP_002347646 [Homo ... 164 1e-41 gi|239754420 PREDICTED: hypothetical protein [Homo sapiens] 108 1e-24 gi|239742965 PREDICTED: hypothetical protein XP_002342706 [Homo ... 108 1e-24 gi|169171558 PREDICTED: hypothetical protein [Homo sapiens] 34 0.022 gi|194578898 hypothetical protein LOC100170841 [Homo sapiens] 33 0.064 gi|91208420 bassoon protein [Homo sapiens] 32 0.11 gi|169177385 PREDICTED: hypothetical protein [Homo sapiens] 30 0.42 gi|19923748 dihydrolipoamide S-succinyltransferase (E2 component... 30 0.42 gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 30 0.42 gi|110618248 mucin and cadherin-like isoform 1 [Homo sapiens] 30 0.54 gi|209364619 pregnancy upregulated non-ubiquitously expressed Ca... 29 0.71 gi|110832843 TBP-associated factor 4 [Homo sapiens] 29 0.93 gi|239746705 PREDICTED: hypothetical protein XP_002343815 [Homo ... 28 1.2 gi|169177307 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2 gi|205361109 multiple C2 domains, transmembrane 1 isoform L [Hom... 28 1.2 gi|153285461 fibroblast growth factor 2 [Homo sapiens] 28 1.6 gi|239756085 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6 gi|239750614 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6 gi|239744921 PREDICTED: hypothetical protein XP_002343308 [Homo ... 28 1.6 gi|139394621 chondroitin sulfate proteoglycan 5 (neuroglycan C) ... 28 1.6 gi|22547197 zinc finger protein of the cerebellum 2 [Homo sapiens] 28 1.6 gi|154426272 hypothetical protein LOC54540 [Homo sapiens] 28 1.6 gi|239756307 PREDICTED: similar to ubiquitin-associated protein ... 28 2.1 gi|239755362 PREDICTED: hypothetical protein [Homo sapiens] 28 2.1 gi|239750857 PREDICTED: similar to ubiquitin-associated protein ... 28 2.1 gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo ... 28 2.1 gi|239745220 PREDICTED: hypothetical protein [Homo sapiens] 28 2.1 gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo ... 28 2.1 gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sap... 28 2.1 gi|73476377 LBXCOR1 homolog [Homo sapiens] 28 2.1 >gi|239747543 PREDICTED: hypothetical protein XP_002347646 [Homo sapiens] Length = 80 Score = 164 bits (415), Expect = 1e-41 Identities = 80/80 (100%), Positives = 80/80 (100%) Query: 1 MGLGAVEQGATLVGEAREAQEPTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTAAAGPGA 60 MGLGAVEQGATLVGEAREAQEPTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTAAAGPGA Sbjct: 1 MGLGAVEQGATLVGEAREAQEPTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTAAAGPGA 60 Query: 61 KPLTAQSPVVPAGRSEREEF 80 KPLTAQSPVVPAGRSEREEF Sbjct: 61 KPLTAQSPVVPAGRSEREEF 80 >gi|239754420 PREDICTED: hypothetical protein [Homo sapiens] Length = 105 Score = 108 bits (269), Expect = 1e-24 Identities = 55/71 (77%), Positives = 58/71 (81%) Query: 1 MGLGAVEQGATLVGEAREAQEPTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTAAAGPGA 60 MGLGA+EQGA LV EAR AQEPTE EAQAW AAGP+ CPAGRQLRP EKLSTAAAGPGA Sbjct: 12 MGLGAMEQGAALVREARAAQEPTERGEAQAWRAAGPEPCPAGRQLRPREKLSTAAAGPGA 71 Query: 61 KPLTAQSPVVP 71 PLTA+ P Sbjct: 72 TPLTARGGGAP 82 >gi|239742965 PREDICTED: hypothetical protein XP_002342706 [Homo sapiens] Length = 105 Score = 108 bits (269), Expect = 1e-24 Identities = 55/71 (77%), Positives = 58/71 (81%) Query: 1 MGLGAVEQGATLVGEAREAQEPTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTAAAGPGA 60 MGLGA+EQGA LV EAR AQEPTE EAQAW AAGP+ CPAGRQLRP EKLSTAAAGPGA Sbjct: 12 MGLGAMEQGAALVREARAAQEPTERGEAQAWRAAGPEPCPAGRQLRPREKLSTAAAGPGA 71 Query: 61 KPLTAQSPVVP 71 PLTA+ P Sbjct: 72 TPLTARGGGAP 82 >gi|169171558 PREDICTED: hypothetical protein [Homo sapiens] Length = 303 Score = 34.3 bits (77), Expect = 0.022 Identities = 14/29 (48%), Positives = 19/29 (65%) Query: 42 GRQLRPGEKLSTAAAGPGAKPLTAQSPVV 70 G Q RP + S AGP A+PL +Q+P+V Sbjct: 95 GEQYRPSNEQSQVTAGPPARPLASQAPIV 123 >gi|194578898 hypothetical protein LOC100170841 [Homo sapiens] Length = 379 Score = 32.7 bits (73), Expect = 0.064 Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 4/55 (7%) Query: 22 PTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTAAAGPGAKPLTAQSPVVPAGRSE 76 P G E Q AA P P+ R P LST AGPG TA P +P +E Sbjct: 160 PAPGLEPQRGPAASPPQEPSSRPPSPPAGLSTEPAGPG----TAPRPFLPGQPAE 210 >gi|91208420 bassoon protein [Homo sapiens] Length = 3926 Score = 32.0 bits (71), Expect = 0.11 Identities = 20/64 (31%), Positives = 27/64 (42%) Query: 14 GEAREAQEPTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTAAAGPGAKPLTAQSPVVPAG 73 G A+ P +G QA A GP RPG A PGA + S ++P G Sbjct: 3844 GSKGTAKAPQQGRAPQAQPAPGPGPAGVKAGARPGGTPGAPAGQPGADGESVFSKILPGG 3903 Query: 74 RSER 77 +E+ Sbjct: 3904 AAEQ 3907 Score = 25.8 bits (55), Expect = 7.8 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Query: 34 AGPKLCPA-GRQLRPGEKLSTAAAGPGAKPLTAQSPVVPAGRSERE 78 +GP PA G + PG ++ + GPGA P T + GR+E + Sbjct: 402 SGPGPGPAPGAKTEPGARMGPGS-GPGALPKTGGTTSPKHGRAEHQ 446 >gi|169177385 PREDICTED: hypothetical protein [Homo sapiens] Length = 223 Score = 30.0 bits (66), Expect = 0.42 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 7/65 (10%) Query: 2 GLGAVEQGATLVG-EAREAQEPTEGAEAQAWWA------AGPKLCPAGRQLRPGEKLSTA 54 G+G +G L G +AR +P WA A PKL A PG ++ A Sbjct: 81 GIGGAGRGQGLAGSQARSTCDPEAAQAMLTTWAPSYRRQATPKLAGAPSLADPGLDVAVA 140 Query: 55 AAGPG 59 AA PG Sbjct: 141 AAKPG 145 >gi|19923748 dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex) [Homo sapiens] Length = 453 Score = 30.0 bits (66), Expect = 0.42 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 11/69 (15%) Query: 4 GAVEQGATLVGEAREAQEPTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTAAAGPGAKPL 63 G VE G L + P + A+A AA PK P + AA P A P+ Sbjct: 132 GKVEGGTPLFTLRKTGAAPAKAKPAEAPAAAAPKAEP-----------TAAAVPPPAAPI 180 Query: 64 TAQSPVVPA 72 Q P VP+ Sbjct: 181 PTQMPPVPS 189 >gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] Length = 2400 Score = 30.0 bits (66), Expect = 0.42 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 7/73 (9%) Query: 2 GLGAVEQGATLVGEAR-------EAQEPTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTA 54 GLG EQG L AR ++ T E + W P+ CP + ++ ++ Sbjct: 511 GLGGPEQGGRLTPRARSEEGASSDSSASTGSHEGSSEWGGRPQGCPGKARAETSQQEASE 570 Query: 55 AAGPGAKPLTAQS 67 P + L+ S Sbjct: 571 GGDPASPALSLSS 583 >gi|110618248 mucin and cadherin-like isoform 1 [Homo sapiens] Length = 845 Score = 29.6 bits (65), Expect = 0.54 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 1/70 (1%) Query: 4 GAVEQGATLVGEAREAQEPTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTAAAGPGAKPL 63 G + E EP++G + P+G LRP ST PGA+ Sbjct: 469 GTTGPWTSTTSEVPRPPEPSQGPSTTSSGGGTGPHPPSGTTLRPPTS-STPGGPPGAENS 527 Query: 64 TAQSPVVPAG 73 T+ P P G Sbjct: 528 TSHQPATPGG 537 >gi|209364619 pregnancy upregulated non-ubiquitously expressed CaM kinase isoform a [Homo sapiens] Length = 426 Score = 29.3 bits (64), Expect = 0.71 Identities = 13/31 (41%), Positives = 15/31 (48%) Query: 32 WAAGPKLCPAGRQLRPGEKLSTAAAGPGAKP 62 W GP PAG QLR + S+ G G P Sbjct: 43 WCKGPGAGPAGPQLREAARASSGLGGGGRHP 73 >gi|110832843 TBP-associated factor 4 [Homo sapiens] Length = 1085 Score = 28.9 bits (63), Expect = 0.93 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 7/60 (11%) Query: 16 AREAQEPTEGAE-------AQAWWAAGPKLCPAGRQLRPGEKLSTAAAGPGAKPLTAQSP 68 A + + P EG+ A A AAGP+ PAG G A AGPG P P Sbjct: 123 AAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGP 182 >gi|239746705 PREDICTED: hypothetical protein XP_002343815 [Homo sapiens] Length = 411 Score = 28.5 bits (62), Expect = 1.2 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 2/72 (2%) Query: 1 MGLGAVEQGATLVGEAREAQEPTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTAAAGPGA 60 +G+G E G +L G A A+ A +LC A Q P + A P A Sbjct: 127 VGVGDPEAGGSLHGCAGSARAAVGAVSGPDLAARSSRLCRANYQAPP--PTAYHAPPPTA 184 Query: 61 KPLTAQSPVVPA 72 +P +A P P+ Sbjct: 185 QPTSAAHPAAPS 196 >gi|169177307 PREDICTED: hypothetical protein [Homo sapiens] Length = 223 Score = 28.5 bits (62), Expect = 1.2 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 7/65 (10%) Query: 2 GLGAVEQGATLVG-EAREAQEPTEGAEAQAWWA------AGPKLCPAGRQLRPGEKLSTA 54 G+G +G L G +AR +P WA A PKL A PG ++ A Sbjct: 81 GIGGAGRGQGLGGSQARGTCDPEAAQAMLTTWAPSYRRQATPKLAGAPSLADPGMDVAVA 140 Query: 55 AAGPG 59 AA PG Sbjct: 141 AAKPG 145 >gi|205361109 multiple C2 domains, transmembrane 1 isoform L [Homo sapiens] Length = 999 Score = 28.5 bits (62), Expect = 1.2 Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 6/78 (7%) Query: 2 GLGAVEQGATLVGEAREAQEPTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTAAAGPGAK 61 G G EQG+TL RE P A A AAG P GR S+A++ + Sbjct: 111 GAGRAEQGSTLRRRIREHLLPAVKGPAAASGAAG-GTPPGGRSPDSAPSSSSASSSLSSS 169 Query: 62 PLTAQSPVVPAGRSEREE 79 P Q P P G R+E Sbjct: 170 P---QPP--PRGDRARDE 182 >gi|153285461 fibroblast growth factor 2 [Homo sapiens] Length = 288 Score = 28.1 bits (61), Expect = 1.6 Identities = 19/56 (33%), Positives = 21/56 (37%), Gaps = 1/56 (1%) Query: 2 GLGAVEQGATLVGEAREAQEPTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTAAAG 57 G G G L G R G + A P+ PA R RPG T AAG Sbjct: 83 GRGRALPGGRLGGRGRGRAPERVGGRGRGRGTAAPRAAPAARGSRPG-PAGTMAAG 137 >gi|239756085 PREDICTED: hypothetical protein [Homo sapiens] Length = 165 Score = 28.1 bits (61), Expect = 1.6 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%) Query: 22 PTEGAEAQAWWAAGPKLCP--AGRQLRPGEKLSTAAAGPGAKPLTAQSP 68 P G + AG L P + R + G + S+ +AGPGA P + P Sbjct: 104 PAVGRASPGAQGAGGSLAPYSSARVRKSGPQSSSGSAGPGAPPASLPEP 152 >gi|239750614 PREDICTED: hypothetical protein [Homo sapiens] Length = 165 Score = 28.1 bits (61), Expect = 1.6 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%) Query: 22 PTEGAEAQAWWAAGPKLCP--AGRQLRPGEKLSTAAAGPGAKPLTAQSP 68 P G + AG L P + R + G + S+ +AGPGA P + P Sbjct: 104 PAVGRASPGAQGAGGSLAPYSSARVRKSGPQSSSGSAGPGAPPASLPEP 152 >gi|239744921 PREDICTED: hypothetical protein XP_002343308 [Homo sapiens] Length = 165 Score = 28.1 bits (61), Expect = 1.6 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%) Query: 22 PTEGAEAQAWWAAGPKLCP--AGRQLRPGEKLSTAAAGPGAKPLTAQSP 68 P G + AG L P + R + G + S+ +AGPGA P + P Sbjct: 104 PAVGRASPGAQGAGGSLAPYSSARVRKSGPQSSSGSAGPGAPPASLPEP 152 >gi|139394621 chondroitin sulfate proteoglycan 5 (neuroglycan C) precursor [Homo sapiens] Length = 539 Score = 28.1 bits (61), Expect = 1.6 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 5/54 (9%) Query: 15 EAREAQEPTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTAAAGPGAKPLTAQSP 68 + RE P E +A W A P G P E L +AA G L A SP Sbjct: 58 DTREEAGPPAAGEDEASWTA-----PGGELAGPEEVLQESAAVTGTAWLEADSP 106 >gi|22547197 zinc finger protein of the cerebellum 2 [Homo sapiens] Length = 532 Score = 28.1 bits (61), Expect = 1.6 Identities = 13/36 (36%), Positives = 19/36 (52%) Query: 37 KLCPAGRQLRPGEKLSTAAAGPGAKPLTAQSPVVPA 72 KL P +L PG+ + + GPGA P +A + A Sbjct: 61 KLNPGAHELSPGQSSAFTSQGPGAYPGSAAAAAAAA 96 >gi|154426272 hypothetical protein LOC54540 [Homo sapiens] Length = 789 Score = 28.1 bits (61), Expect = 1.6 Identities = 25/75 (33%), Positives = 30/75 (40%), Gaps = 14/75 (18%) Query: 13 VGEAREAQEPTEGAEAQAWWAAGPKL----------CPAGRQLRPGEKLSTAAAGPGAKP 62 VG EA E + G+ WA PK P + RP E+ S GP A+P Sbjct: 650 VGSCAEAGEGSRGSRPGPGWAGSPKTEKEKGSSWRNWPGEAKARPQEQESVQPPGP-ARP 708 Query: 63 LTAQSPVVPAGRSER 77 QS GRS R Sbjct: 709 ---QSLPQGKGRSRR 720 >gi|239756307 PREDICTED: similar to ubiquitin-associated protein 1 (predicted) [Homo sapiens] Length = 290 Score = 27.7 bits (60), Expect = 2.1 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%) Query: 15 EAREAQEPTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTAAAGPGAK 61 EA + P E E +A ++G + PA L+PG S A+ GPG + Sbjct: 98 EAGHQERPEEEGEDEAEASSGSEEEPAPSSLQPG---SPASPGPGRR 141 >gi|239755362 PREDICTED: hypothetical protein [Homo sapiens] Length = 112 Score = 27.7 bits (60), Expect = 2.1 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 1/58 (1%) Query: 1 MGLGAVEQGATLVGEAREAQEPTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTAAAGP 58 MG G +EQ A LV ++ QEP + P L P G +K +GP Sbjct: 25 MGPGVLEQRAALVRDSTAVQEPRRRGGSGMACCRSPAL-PHGEVAEARQKFQREVSGP 81 >gi|239750857 PREDICTED: similar to ubiquitin-associated protein 1 (predicted) [Homo sapiens] Length = 290 Score = 27.7 bits (60), Expect = 2.1 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%) Query: 15 EAREAQEPTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTAAAGPGAK 61 EA + P E E +A ++G + PA L+PG S A+ GPG + Sbjct: 98 EAGHQERPEEEGEDEAEASSGSEEEPAPSSLQPG---SPASPGPGRR 141 >gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo sapiens] Length = 594 Score = 27.7 bits (60), Expect = 2.1 Identities = 18/45 (40%), Positives = 20/45 (44%) Query: 2 GLGAVEQGATLVGEAREAQEPTEGAEAQAWWAAGPKLCPAGRQLR 46 GLG Q VGEAREA E A A +L A Q+R Sbjct: 353 GLGVSPQAGARVGEAREAVTTHERAHLDREGEARARLGQAAAQMR 397 >gi|239745220 PREDICTED: hypothetical protein [Homo sapiens] Length = 290 Score = 27.7 bits (60), Expect = 2.1 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%) Query: 15 EAREAQEPTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTAAAGPGAK 61 EA + P E E +A ++G + PA L+PG S A+ GPG + Sbjct: 98 EAGHQERPEEEGEDEAEASSGSEEEPAPSSLQPG---SPASPGPGRR 141 >gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo sapiens] Length = 594 Score = 27.7 bits (60), Expect = 2.1 Identities = 18/45 (40%), Positives = 20/45 (44%) Query: 2 GLGAVEQGATLVGEAREAQEPTEGAEAQAWWAAGPKLCPAGRQLR 46 GLG Q VGEAREA E A A +L A Q+R Sbjct: 353 GLGVSPQAGARVGEAREAVTTHERAHLDREGEARARLGQAAAQMR 397 >gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sapiens] Length = 1747 Score = 27.7 bits (60), Expect = 2.1 Identities = 15/39 (38%), Positives = 17/39 (43%) Query: 38 LCPAGRQLRPGEKLSTAAAGPGAKPLTAQSPVVPAGRSE 76 L P + G L+T AGPG P T SP SE Sbjct: 1322 LVPPPEEFANGVLLATPLAGPGPSPTTVPSPASGKPSSE 1360 >gi|73476377 LBXCOR1 homolog [Homo sapiens] Length = 921 Score = 27.7 bits (60), Expect = 2.1 Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 1/70 (1%) Query: 7 EQGATLVGEAREAQEPTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTAAAG-PGAKPLTA 65 E A G + ++PT A + A GP P G RP +L AG P L A Sbjct: 635 EPSAPSAGGGPDGEQPTGPPSATSSGADGPANSPDGGSPRPRRRLGPPPAGRPAFGDLAA 694 Query: 66 QSPVVPAGRS 75 + V RS Sbjct: 695 EDLVRRPERS 704 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.308 0.127 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,734,666 Number of Sequences: 37866 Number of extensions: 177895 Number of successful extensions: 865 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 61 Number of HSP's that attempted gapping in prelim test: 817 Number of HSP's gapped (non-prelim): 106 length of query: 80 length of database: 18,247,518 effective HSP length: 52 effective length of query: 28 effective length of database: 16,278,486 effective search space: 455797608 effective search space used: 455797608 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.