Search of human proteins with 239747408

Search of human proteins with 239747408

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239747408 PREDICTED: hypothetical protein [Homo sapiens]
         (109 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239752856 PREDICTED: hypothetical protein [Homo sapiens]           223   2e-59
gi|239747408 PREDICTED: hypothetical protein [Homo sapiens]           223   2e-59
gi|239741233 PREDICTED: hypothetical protein XP_002342102 [Homo ...   223   2e-59
gi|4758630 potassium voltage-gated channel KQT-like protein 3 [H...    28   1.6  
gi|216548487 peptidyl arginine deiminase, type IV [Homo sapiens]       28   2.1  
gi|134031945 SCO-spondin [Homo sapiens]                                27   3.5  
gi|224586894 hypothetical protein LOC135398 [Homo sapiens]             27   4.6  
gi|66346695 fibrillin 2 precursor [Homo sapiens]                       26   6.0  
gi|150378452 heparan-alpha-glucosaminide N-acetyltransferase [Ho...    26   6.0  

>gi|239752856 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 109

 Score =  223 bits (569), Expect = 2e-59
 Identities = 109/109 (100%), Positives = 109/109 (100%)

Query: 1   MPSLGGYGLCPSTRRLLEGRSAEVTTAFRLSAALPGSRRGGGYEDSCIDPVLNPISQDPI 60
           MPSLGGYGLCPSTRRLLEGRSAEVTTAFRLSAALPGSRRGGGYEDSCIDPVLNPISQDPI
Sbjct: 1   MPSLGGYGLCPSTRRLLEGRSAEVTTAFRLSAALPGSRRGGGYEDSCIDPVLNPISQDPI 60

Query: 61  YSRGCEVFLNVTFFKVTIISQKLKPKLKNCVKIRDCNLNLALAEPSFFL 109
           YSRGCEVFLNVTFFKVTIISQKLKPKLKNCVKIRDCNLNLALAEPSFFL
Sbjct: 61  YSRGCEVFLNVTFFKVTIISQKLKPKLKNCVKIRDCNLNLALAEPSFFL 109


>gi|239747408 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 109

 Score =  223 bits (569), Expect = 2e-59
 Identities = 109/109 (100%), Positives = 109/109 (100%)

Query: 1   MPSLGGYGLCPSTRRLLEGRSAEVTTAFRLSAALPGSRRGGGYEDSCIDPVLNPISQDPI 60
           MPSLGGYGLCPSTRRLLEGRSAEVTTAFRLSAALPGSRRGGGYEDSCIDPVLNPISQDPI
Sbjct: 1   MPSLGGYGLCPSTRRLLEGRSAEVTTAFRLSAALPGSRRGGGYEDSCIDPVLNPISQDPI 60

Query: 61  YSRGCEVFLNVTFFKVTIISQKLKPKLKNCVKIRDCNLNLALAEPSFFL 109
           YSRGCEVFLNVTFFKVTIISQKLKPKLKNCVKIRDCNLNLALAEPSFFL
Sbjct: 61  YSRGCEVFLNVTFFKVTIISQKLKPKLKNCVKIRDCNLNLALAEPSFFL 109


>gi|239741233 PREDICTED: hypothetical protein XP_002342102 [Homo
           sapiens]
          Length = 109

 Score =  223 bits (569), Expect = 2e-59
 Identities = 109/109 (100%), Positives = 109/109 (100%)

Query: 1   MPSLGGYGLCPSTRRLLEGRSAEVTTAFRLSAALPGSRRGGGYEDSCIDPVLNPISQDPI 60
           MPSLGGYGLCPSTRRLLEGRSAEVTTAFRLSAALPGSRRGGGYEDSCIDPVLNPISQDPI
Sbjct: 1   MPSLGGYGLCPSTRRLLEGRSAEVTTAFRLSAALPGSRRGGGYEDSCIDPVLNPISQDPI 60

Query: 61  YSRGCEVFLNVTFFKVTIISQKLKPKLKNCVKIRDCNLNLALAEPSFFL 109
           YSRGCEVFLNVTFFKVTIISQKLKPKLKNCVKIRDCNLNLALAEPSFFL
Sbjct: 61  YSRGCEVFLNVTFFKVTIISQKLKPKLKNCVKIRDCNLNLALAEPSFFL 109


>gi|4758630 potassium voltage-gated channel KQT-like protein 3 [Homo
           sapiens]
          Length = 872

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 18/51 (35%), Positives = 21/51 (41%)

Query: 5   GGYGLCPSTRRLLEGRSAEVTTAFRLSAALPGSRRGGGYEDSCIDPVLNPI 55
           GG       R L EG +   T  F  S ++P S  G G  DS   P   PI
Sbjct: 822 GGSSWMREKRYLAEGETDTDTDPFTPSGSMPLSSTGDGISDSVWTPSNKPI 872


>gi|216548487 peptidyl arginine deiminase, type IV [Homo sapiens]
          Length = 663

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 51  VLNPISQDPIYSRGCEVFLNVTFFK-VTIISQKLKPKLKNC 90
           ++ P +Q P     C +F N  F K VT ++ K K KL  C
Sbjct: 297 IMTPNTQPPQEVYACSIFENEDFLKSVTTLAMKAKCKLTIC 337


>gi|134031945 SCO-spondin [Homo sapiens]
          Length = 5147

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 9/88 (10%)

Query: 1    MPSLGGYGLCPSTRRL-----LEGRSAEVTTAFRLSAALPGSRRGGGYEDSCIDPVLNPI 55
            MP++   GL P++R L     L   S E  +A R     P  + G   ED C+D VL P 
Sbjct: 2449 MPTMALPGL-PASRALCSPSQLSCGSGECLSAERRCDLRPDCQDGSD-EDGCVDCVLAPW 2506

Query: 56   SQDPIYSRGCEVFLNVTFFKVTIISQKL 83
            S     SR C   L +TF +  ++   L
Sbjct: 2507 SVWSSCSRSCG--LGLTFQRQELLRPPL 2532


>gi|224586894 hypothetical protein LOC135398 [Homo sapiens]
          Length = 244

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query: 3  SLGGYGLCPSTRRLLEGRSAEVTTAFRLSAALPGSR-RGGGYEDSCIDPVLNP 54
          SLG  G  P  R +  GR A +    R  A    SR +GGG+ED   D  L P
Sbjct: 25 SLGDLG--PFPREV--GRGAPLAPGARNPATAGASRSQGGGHEDRTADRALGP 73


>gi|66346695 fibrillin 2 precursor [Homo sapiens]
          Length = 2912

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 15/99 (15%)

Query: 2    PSLGGYGLCPSTRRLLEGRSAEVTTAFRLSAALPGSRRGGGYEDSCIDPVLNPISQDPIY 61
            P L G G+C +T    E    E            G   G     +C+D  ++   ++P+ 
Sbjct: 1123 PDLCGSGICVNTPGSFECECFE------------GYESGFMMMKNCMD--IDECERNPLL 1168

Query: 62   SRGCEVFLNVTFFKVTI-ISQKLKPKLKNCVKIRDCNLN 99
             RG         F+    +  +L P  ++CV I +C+L+
Sbjct: 1169 CRGGTCVNTEGSFQCDCPLGHELSPSREDCVDINECSLS 1207


>gi|150378452 heparan-alpha-glucosaminide N-acetyltransferase [Homo
           sapiens]
          Length = 635

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 52  LNPISQDPIYSRGCEVFLNVTFFKVTIISQKL-KPKLKNCVKIRDC 96
           L P+S D +   G    L VT+F V ++     KP  ++C   R C
Sbjct: 335 LGPLSWDKVRIPGVLQRLGVTYFVVAVLELLFAKPVPEHCASERSC 380


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.140    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,290,852
Number of Sequences: 37866
Number of extensions: 173977
Number of successful extensions: 415
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 410
Number of HSP's gapped (non-prelim): 10
length of query: 109
length of database: 18,247,518
effective HSP length: 79
effective length of query: 30
effective length of database: 15,256,104
effective search space: 457683120
effective search space used: 457683120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.