Guide to the Human Genome
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Name: PADI4 Sequence: fasta or formatted (663aa) NCBI GI: 216548487
Description:

peptidyl arginine deiminase, type IV

Referenced in:

Additional Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         31           1
 C cysteine            2.9         19           2
 D aspartate           5.9         39           2
 E glutamate           5.9         39           3
 F phenylalanine       5.0         33           2
 G glycine             6.6         44           2
 H histidine           2.3         15           1
 I isoleucine          4.4         29           2
 K lysine              6.6         44           4
 L leucine             9.8         65           3
 M methionine          2.7         18           1
 N asparagine          3.5         23           1
 P proline             7.1         47           2
 Q glutamine           4.4         29           2
 R arginine            4.1         27           2
 S serine              6.9         46           2
 T threonine           6.2         41           2
 V valine              7.7         51           3
 W tryptophan          1.5         10           2
 Y tyrosine            2.0         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   peptidyl arginine deiminase, type IV 
PADI1                 0.549   peptidylarginine deiminase type I 
PADI3                 0.519   peptidyl arginine deiminase, type III 
PADI2                 0.475   peptidyl arginine deiminase, type II 
PADI6                 0.425   peptidylarginine deiminase type 6 
NUP160                0.004   nucleoporin 160kDa 
ITGA2                 0.004   integrin alpha 2 precursor 
IVL                   0.004   involucrin 
HORMAD1               0.004   HORMA domain containing 1 
SLK                   0.004   serine/threonine kinase 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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