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Search of human proteins with 239747350
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747350 PREDICTED: hypothetical protein XP_002346429 [Homo
sapiens]
(438 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747350 PREDICTED: hypothetical protein XP_002346429 [Homo ... 902 0.0
gi|239741175 PREDICTED: hypothetical protein XP_002342127 [Homo ... 355 6e-98
gi|239752810 PREDICTED: hypothetical protein [Homo sapiens] 298 7e-81
gi|119220564 one cut domain, family member 2 [Homo sapiens] 39 0.012
gi|169166769 PREDICTED: hypothetical protein [Homo sapiens] 37 0.035
gi|169166416 PREDICTED: hypothetical protein [Homo sapiens] 37 0.035
gi|165905613 ring finger and KH domain containing 1 [Homo sapiens] 35 0.13
gi|169166960 PREDICTED: hypothetical protein [Homo sapiens] 35 0.18
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 35 0.18
gi|239755232 PREDICTED: hypothetical protein [Homo sapiens] 34 0.23
gi|239749768 PREDICTED: hypothetical protein [Homo sapiens] 34 0.23
gi|239744027 PREDICTED: hypothetical protein XP_002343007 [Homo ... 34 0.23
gi|110832843 TBP-associated factor 4 [Homo sapiens] 34 0.23
gi|7662486 ring finger protein 44 [Homo sapiens] 34 0.30
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 33 0.39
gi|239755952 PREDICTED: hypothetical protein [Homo sapiens] 33 0.51
gi|7657577 SHP2-interacting transmembrane adaptor protein [Homo ... 33 0.51
gi|4503489 ephrin-B3 precursor [Homo sapiens] 33 0.67
gi|114145479 neuroepithelial cell transforming gene 1 isoform 1 ... 32 0.87
gi|19923327 neuroepithelial cell transforming gene 1 isoform 2 [... 32 0.87
gi|13994190 frizzled 8 [Homo sapiens] 32 0.87
gi|238776833 THO complex 4 [Homo sapiens] 32 1.1
gi|113419362 PREDICTED: hypothetical protein [Homo sapiens] 32 1.5
gi|113418886 PREDICTED: hypothetical protein [Homo sapiens] 32 1.5
gi|113419893 PREDICTED: hypothetical protein [Homo sapiens] 32 1.5
gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens] 32 1.5
gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens] 32 1.5
gi|239756880 PREDICTED: hypothetical protein [Homo sapiens] 31 1.9
gi|239751374 PREDICTED: hypothetical protein XP_002347830 [Homo ... 31 1.9
gi|84570137 homeobox B3 [Homo sapiens] 31 1.9
>gi|239747350 PREDICTED: hypothetical protein XP_002346429 [Homo
sapiens]
Length = 438
Score = 902 bits (2330), Expect = 0.0
Identities = 438/438 (100%), Positives = 438/438 (100%)
Query: 1 MIKVNCRRGRSRRAPRQVKRACRPKHTFPDQNTQRGFSKVLGALKGYGASRSGCCEKPGV 60
MIKVNCRRGRSRRAPRQVKRACRPKHTFPDQNTQRGFSKVLGALKGYGASRSGCCEKPGV
Sbjct: 1 MIKVNCRRGRSRRAPRQVKRACRPKHTFPDQNTQRGFSKVLGALKGYGASRSGCCEKPGV 60
Query: 61 ELAGASGLPFSELDVLNVAFRAVDLAEIRVADTQEVRTQAPYGHFGNVCERLADGTAKEE 120
ELAGASGLPFSELDVLNVAFRAVDLAEIRVADTQEVRTQAPYGHFGNVCERLADGTAKEE
Sbjct: 61 ELAGASGLPFSELDVLNVAFRAVDLAEIRVADTQEVRTQAPYGHFGNVCERLADGTAKEE 120
Query: 121 AAHLLIECCHVGVLNRRPRLLQTLLQIKELFLSRCGLRISQHDFLFDAEKEHLWLPTTLE 180
AAHLLIECCHVGVLNRRPRLLQTLLQIKELFLSRCGLRISQHDFLFDAEKEHLWLPTTLE
Sbjct: 121 AAHLLIECCHVGVLNRRPRLLQTLLQIKELFLSRCGLRISQHDFLFDAEKEHLWLPTTLE 180
Query: 181 NRSGPSPQLSGGAIKFVVPKQDRSWLSQCLNVPIREMGLITPAAPSQRVGELKLMPLKPP 240
NRSGPSPQLSGGAIKFVVPKQDRSWLSQCLNVPIREMGLITPAAPSQRVGELKLMPLKPP
Sbjct: 181 NRSGPSPQLSGGAIKFVVPKQDRSWLSQCLNVPIREMGLITPAAPSQRVGELKLMPLKPP 240
Query: 241 TTWHTVGTQVIAEAVPSTKPGESTYRRGARRTHTFRGIPPGLPTWRRLLLSWFNSCPRTL 300
TTWHTVGTQVIAEAVPSTKPGESTYRRGARRTHTFRGIPPGLPTWRRLLLSWFNSCPRTL
Sbjct: 241 TTWHTVGTQVIAEAVPSTKPGESTYRRGARRTHTFRGIPPGLPTWRRLLLSWFNSCPRTL 300
Query: 301 KHAQTHSSTGQEVGGIGEGGGFGPGRRKGSPGRLRGPPGADEAEEVEADEQHPLAAAPPR 360
KHAQTHSSTGQEVGGIGEGGGFGPGRRKGSPGRLRGPPGADEAEEVEADEQHPLAAAPPR
Sbjct: 301 KHAQTHSSTGQEVGGIGEGGGFGPGRRKGSPGRLRGPPGADEAEEVEADEQHPLAAAPPR 360
Query: 361 VVVERRAAAVLALRDDRFVVLVVLHGAGCGASLPPREDVPQQQPHTQAPGVQPGLPASNC 420
VVVERRAAAVLALRDDRFVVLVVLHGAGCGASLPPREDVPQQQPHTQAPGVQPGLPASNC
Sbjct: 361 VVVERRAAAVLALRDDRFVVLVVLHGAGCGASLPPREDVPQQQPHTQAPGVQPGLPASNC 420
Query: 421 RRWCFLLLLRASAFLCQP 438
RRWCFLLLLRASAFLCQP
Sbjct: 421 RRWCFLLLLRASAFLCQP 438
>gi|239741175 PREDICTED: hypothetical protein XP_002342127 [Homo
sapiens]
Length = 352
Score = 355 bits (910), Expect = 6e-98
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 271 RTHTFRGIPPGLPTWRRLLLSWFNSCPRTLKHAQTHSSTGQEVGGIGEGGGFGPGRRKGS 330
RTHTFRGIPPGLPTWRRLLLSWFNSCPRTLKHAQTHSSTGQEVGGIGEGGGFGPGRRKGS
Sbjct: 185 RTHTFRGIPPGLPTWRRLLLSWFNSCPRTLKHAQTHSSTGQEVGGIGEGGGFGPGRRKGS 244
Query: 331 PGRLRGPPGADEAEEVEADEQHPLAAAPPRVVVERRAAAVLALRDDRFVVLVVLHGAGCG 390
PGRLRGPPGADEAEEVEADEQHPLAAAPPRVVVERRAAAVLALRDDRFVVLVVLHGAGCG
Sbjct: 245 PGRLRGPPGADEAEEVEADEQHPLAAAPPRVVVERRAAAVLALRDDRFVVLVVLHGAGCG 304
Query: 391 ASLPPREDVPQQQPHTQAPGVQPGLPASNCRRWCFLLLLRASAFLCQP 438
ASLPPREDVPQQQPHTQAPGVQPGLPASNCRRWCFLLLLRASAFLCQP
Sbjct: 305 ASLPPREDVPQQQPHTQAPGVQPGLPASNCRRWCFLLLLRASAFLCQP 352
Score = 352 bits (903), Expect = 4e-97
Identities = 181/212 (85%), Positives = 184/212 (86%), Gaps = 5/212 (2%)
Query: 1 MIKVNCRRGRSRRAPRQVKRACRPKHTFPDQNTQRGFSKVLGALKGYGASRSGCCEKPGV 60
MIKVNCRRGRSRRAPRQVKRACRPKHTFPDQNTQRGFSKVLGALKGYGASRSGCCEKPGV
Sbjct: 1 MIKVNCRRGRSRRAPRQVKRACRPKHTFPDQNTQRGFSKVLGALKGYGASRSGCCEKPGV 60
Query: 61 ELAGASGLPFSELDVLNVAFRAVDLAEIRVADTQEVRTQAPYGHFGNVCERLADGTAKEE 120
ELAGASGLPFSELDVLNVAFRAVDLAEIRVADTQEVRTQAPYGHFGNVCERLADGTAKEE
Sbjct: 61 ELAGASGLPFSELDVLNVAFRAVDLAEIRVADTQEVRTQAPYGHFGNVCERLADGTAKEE 120
Query: 121 AAHLLIECCHVGVLNRRPRLLQTLLQIKELFLSRCGLRISQHDFLFDAEKEHLWLPTTLE 180
AAHLLIECCHVGVLNRRPRLLQTLLQIKELFLSRCGLRISQHDFLFDAEKEH T
Sbjct: 121 AAHLLIECCHVGVLNRRPRLLQTLLQIKELFLSRCGLRISQHDFLFDAEKEHSAAQPTSP 180
Query: 181 NRSGPSPQLSGGAIKFVVPKQDR---SWLSQC 209
G + G I +P R SW + C
Sbjct: 181 TLKGRTHTFRG--IPPGLPTWRRLLLSWFNSC 210
>gi|239752810 PREDICTED: hypothetical protein [Homo sapiens]
Length = 207
Score = 298 bits (763), Expect = 7e-81
Identities = 162/226 (71%), Positives = 163/226 (72%), Gaps = 23/226 (10%)
Query: 217 MGLITPAAPSQRVGELKLMPLKPPTTWHTVGTQVIAEAVPSTKPGESTYRRGARRTHTFR 276
MGLITPAAPSQRVGELKLMPLKPPTTWHTVGTQVIAEAVPSTKPGESTYRRGA
Sbjct: 1 MGLITPAAPSQRVGELKLMPLKPPTTWHTVGTQVIAEAVPSTKPGESTYRRGAIAHERL- 59
Query: 277 GIPPGLPTWRRLLLSWFNSCPRTLKHAQTHSSTGQEVGGIGEGGGFGPGRRKGSPGRLRG 336
S PR + S G G GG P G P L
Sbjct: 60 ------------------STPRPTQVQAKKSVGSGRAGASGLGGAKAPQEGCGGPPELTA 101
Query: 337 PPGA----DEAEEVEADEQHPLAAAPPRVVVERRAAAVLALRDDRFVVLVVLHGAGCGAS 392
GA EEVEADEQHPLAAAPPRVVVERRAAAVLALRDDRFVVLVVLHGAGCGAS
Sbjct: 102 RRGAALRGPGLEEVEADEQHPLAAAPPRVVVERRAAAVLALRDDRFVVLVVLHGAGCGAS 161
Query: 393 LPPREDVPQQQPHTQAPGVQPGLPASNCRRWCFLLLLRASAFLCQP 438
LPPREDVPQQQPHTQAPGVQPGLPASNCRRWCFLLLLRASAFLCQP
Sbjct: 162 LPPREDVPQQQPHTQAPGVQPGLPASNCRRWCFLLLLRASAFLCQP 207
>gi|119220564 one cut domain, family member 2 [Homo sapiens]
Length = 504
Score = 38.5 bits (88), Expect = 0.012
Identities = 39/133 (29%), Positives = 52/133 (39%), Gaps = 20/133 (15%)
Query: 302 HAQTHSSTGQEVGGIGEGGGFGPGRR-------------KGSPGRLRGPPGADEAEEVEA 348
H +G GG G GGG GPG +G+ G LRGPP A + E
Sbjct: 33 HGPAGGGSGGGGGGGGGGGGGGPGHEQELLASPSPHHAGRGAAGSLRGPPPPPTAHQ-EL 91
Query: 349 DEQHPLAAAPPRVVVERRAAAVLALRDDRFVVLVVLHGA---GCGASLPPREDVPQQQPH 405
AAA R + A++L D R + + LH A C +S P + +
Sbjct: 92 GTAAAAAAAASRSAMVTSMASILDGGDYRPELSIPLHHAMSMSCDSSPP---GMGMSNTY 148
Query: 406 TQAPGVQPGLPAS 418
T +QP P S
Sbjct: 149 TTLTPLQPLPPIS 161
>gi|169166769 PREDICTED: hypothetical protein [Homo sapiens]
Length = 216
Score = 37.0 bits (84), Expect = 0.035
Identities = 51/180 (28%), Positives = 65/180 (36%), Gaps = 42/180 (23%)
Query: 238 KPPTTWHTVGTQV-IAEAVPSTKPGESTYRRGARRTHTFRGIPPGLPTWRRLLLSWFNSC 296
KPP T+V A A S + GEST + GAR H+ PP P R +W
Sbjct: 23 KPPPQNRQKKTRVKSAAARRSRRLGESTAKPGARTGHS----PPARPGRHRGGCAW---T 75
Query: 297 PRTLKHAQTHSSTGQEVGGIGEGGGFGPGRRKGSPGRLRGPPGADEAEEVEADEQHPLAA 356
P A + GR + G LR P E + E +H A
Sbjct: 76 PNQRPEAAAREAR-------------DAGRLRAKRGGLREP----ERQRQEVSYRH-RAT 117
Query: 357 APPRVVVERRAAAVLALRDDRFVVLVVLHGAGCGASLPPREDV---PQQQPHTQAPGVQP 413
PP + RR+A L R R + PPR + QQ P T +P QP
Sbjct: 118 LPPHPLRSRRSAPTLGARPRR-------------PTWPPRAQLKRGDQQPPPTPSPASQP 164
>gi|169166416 PREDICTED: hypothetical protein [Homo sapiens]
Length = 216
Score = 37.0 bits (84), Expect = 0.035
Identities = 51/180 (28%), Positives = 65/180 (36%), Gaps = 42/180 (23%)
Query: 238 KPPTTWHTVGTQV-IAEAVPSTKPGESTYRRGARRTHTFRGIPPGLPTWRRLLLSWFNSC 296
KPP T+V A A S + GEST + GAR H+ PP P R +W
Sbjct: 23 KPPPQNRQKKTRVKSAAARRSRRLGESTAKPGARTGHS----PPARPGRHRGGCAW---T 75
Query: 297 PRTLKHAQTHSSTGQEVGGIGEGGGFGPGRRKGSPGRLRGPPGADEAEEVEADEQHPLAA 356
P A + GR + G LR P E + E +H A
Sbjct: 76 PNQRPEAAAREAR-------------DAGRLRAKRGGLREP----ERQRQEVSYRH-RAT 117
Query: 357 APPRVVVERRAAAVLALRDDRFVVLVVLHGAGCGASLPPREDV---PQQQPHTQAPGVQP 413
PP + RR+A L R R + PPR + QQ P T +P QP
Sbjct: 118 LPPHPLRSRRSAPTLGARPRR-------------PTWPPRAQLKRGDQQPPPTPSPASQP 164
>gi|165905613 ring finger and KH domain containing 1 [Homo sapiens]
Length = 651
Score = 35.0 bits (79), Expect = 0.13
Identities = 42/120 (35%), Positives = 49/120 (40%), Gaps = 12/120 (10%)
Query: 307 SSTGQ-EVGGIGEGGGFGPGRRKGSPGRLRGPP--GADEAEEVEADEQHP-LAAAPPRVV 362
SS GQ + GG G GGG G G PG PP GA EA P AAA R+
Sbjct: 3 SSLGQPDGGGGGGGGGGGVGAAGEDPGPGPAPPPEGAQEAAPAPRPPPEPDDAAAALRLA 62
Query: 363 VERRAAAVLALRDDRFVVLVVLHGA-------GCGASLPPREDVPQQ-QPHTQAPGVQPG 414
+++ +A L D GA G A P D P+ P T AP V PG
Sbjct: 63 LDQLSALGLGGAGDTDEEGAAGDGAAAAGGADGGAAPEPVPPDGPEAGAPPTLAPAVAPG 122
>gi|169166960 PREDICTED: hypothetical protein [Homo sapiens]
Length = 216
Score = 34.7 bits (78), Expect = 0.18
Identities = 46/165 (27%), Positives = 59/165 (35%), Gaps = 41/165 (24%)
Query: 252 AEAVPSTKPGESTYRRGARRTHTFRGIPPGLPTWRRLLLSWFNSCPRTLKHAQTHSSTGQ 311
A A S + GEST + GAR H+ PP P R +W P A +
Sbjct: 38 AAARRSRRLGESTAKPGARTGHS----PPTRPGRHRGGCAW---TPNQRPEAAAREAR-- 88
Query: 312 EVGGIGEGGGFGPGRRKGSPGRLRGPPGADEAEEVEADEQHPLAAAPPRVVVERRAAAVL 371
GR + G LR P E + E +H A PP + RR+A L
Sbjct: 89 -----------DAGRLRAKRGGLREP----ERQRQEVSYRH-RATLPPHPLRSRRSAPTL 132
Query: 372 ALRDDRFVVLVVLHGAGCGASLPPREDV---PQQQPHTQAPGVQP 413
R R + PPR + QQ P T +P QP
Sbjct: 133 GARPRR-------------PTWPPRAQLKRGDQQPPPTPSPASQP 164
>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
Length = 419
Score = 34.7 bits (78), Expect = 0.18
Identities = 46/182 (25%), Positives = 64/182 (35%), Gaps = 23/182 (12%)
Query: 167 DAEKEHLWLPTTLENRSGPSPQLSGGAIKFVV----PKQDRSWLSQCLNVPIREMGLITP 222
++++ H + TL PS S AI+ P Q + S + R L
Sbjct: 5 NSKQPHFAMHPTLPEHKYPSLHSSSEAIRRACLPTPPLQSNLFASLDETLLARAEAL--- 61
Query: 223 AAPSQRVGELKLMPLKPPTTWHTVGTQVIAEAVPSTKPGESTYRRGARRTHTFRGIPPG- 281
AA V + K P KP T+HT+ + VP T H + + PG
Sbjct: 62 AAVDIAVSQGKSHPFKPDATYHTMNS------VPCTSTSTVPLAHHHHHHHHHQALEPGD 115
Query: 282 ----LPTWRRLLLSWFNSCPRTLKHAQTHSSTGQEVGGIGEGGGFGPGRRKGSPGRLRGP 337
+ + L++ H G GG G GGG GPG G G G
Sbjct: 116 LLDHISSPSLALMAGAGGAGAAAGGGGAHDGPG---GGGGPGGGGGPGGGPGGGG--GGG 170
Query: 338 PG 339
PG
Sbjct: 171 PG 172
>gi|239755232 PREDICTED: hypothetical protein [Homo sapiens]
Length = 501
Score = 34.3 bits (77), Expect = 0.23
Identities = 29/77 (37%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 324 PGRRKGSPGRLRGPPGADEAEEVEADEQHPLAAAPPRVVVERRAAAVLALRDDRFVVLVV 383
P R++GSPG LR PP A A + H L PPR RR A LR + V
Sbjct: 287 PARQQGSPGVLRVPPEA--APPLPRPRPHLLTRCPPRAPRLRRLEAGRRLRRTAAPLGPV 344
Query: 384 LHGAGCGASLPPREDVP 400
AG G+S R P
Sbjct: 345 ---AGAGSSFGGRPHRP 358
>gi|239749768 PREDICTED: hypothetical protein [Homo sapiens]
Length = 591
Score = 34.3 bits (77), Expect = 0.23
Identities = 29/77 (37%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 324 PGRRKGSPGRLRGPPGADEAEEVEADEQHPLAAAPPRVVVERRAAAVLALRDDRFVVLVV 383
P R++GSPG LR PP A A + H L PPR RR A LR + V
Sbjct: 377 PARQQGSPGVLRVPPEA--APPLPRPRPHLLTRCPPRAPRLRRLEAGRRLRRTAAPLGPV 434
Query: 384 LHGAGCGASLPPREDVP 400
AG G+S R P
Sbjct: 435 ---AGAGSSFGGRPHRP 448
>gi|239744027 PREDICTED: hypothetical protein XP_002343007 [Homo
sapiens]
Length = 591
Score = 34.3 bits (77), Expect = 0.23
Identities = 29/77 (37%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 324 PGRRKGSPGRLRGPPGADEAEEVEADEQHPLAAAPPRVVVERRAAAVLALRDDRFVVLVV 383
P R++GSPG LR PP A A + H L PPR RR A LR + V
Sbjct: 377 PARQQGSPGVLRVPPEA--APPLPRPRPHLLTRCPPRAPRLRRLEAGRRLRRTAAPLGPV 434
Query: 384 LHGAGCGASLPPREDVP 400
AG G+S R P
Sbjct: 435 ---AGAGSSFGGRPHRP 448
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 34.3 bits (77), Expect = 0.23
Identities = 33/103 (32%), Positives = 38/103 (36%), Gaps = 3/103 (2%)
Query: 317 GEGGGFGPGRRKG-SPGRLRGPPGADEAEEVEADEQHPLAAAPPRVVVERRAAAVLALRD 375
G G G GPG G PG+ GP A A AAAP +V AA+L L
Sbjct: 171 GPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPK 230
Query: 376 DRFVVLVVLHGAGCGASLPPREDVPQ--QQPHTQAPGVQPGLP 416
V+ GA+ PP P P AP P P
Sbjct: 231 PAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPP 273
>gi|7662486 ring finger protein 44 [Homo sapiens]
Length = 432
Score = 33.9 bits (76), Expect = 0.30
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 319 GGGFGPGRRKGSPGRLRGPPGADEAEEVEADEQHPLAAAPPRVVVERRAAA 369
G G PG+ GSPG L GP + A + Q P + P V ERRA+A
Sbjct: 25 GPGSTPGQLWGSPG-LEGPLASPPARDERLPSQQPPSRPPHLPVEERRASA 74
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 33.5 bits (75), Expect = 0.39
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 314 GGIGEGGGFGPGRRKGSPGRLRGPPGADEAEEVEADEQHPLAAAPP 359
G IGE G GP G PG+ +GPPG D A+ P PP
Sbjct: 1226 GDIGEKGDSGPSGAAGPPGK-KGPPGEDGAKGSVGPTGLPGDLGPP 1270
>gi|239755952 PREDICTED: hypothetical protein [Homo sapiens]
Length = 233
Score = 33.1 bits (74), Expect = 0.51
Identities = 31/107 (28%), Positives = 39/107 (36%), Gaps = 10/107 (9%)
Query: 236 PLKPPTTWHTVGTQVIAEAVPSTKPGESTYRRGARRTHTFRGIPPGLPTWRRLLLSWFNS 295
P P T G QV++ PG + RGA R T G P L + L S F S
Sbjct: 110 PSTPTTPNMDRGIQVLSALKKKKNPGTARLARGALRAATLPGSPARLSSPSLCLASNFAS 169
Query: 296 CPRTLKHAQTHSSTGQEVGGIGEGG----------GFGPGRRKGSPG 332
+ + S G G G GFG G R+G+ G
Sbjct: 170 RYPLRRRPLSRRSPGWSPAPRGRRGYGKFGDWREKGFGGGPRRGARG 216
>gi|7657577 SHP2-interacting transmembrane adaptor protein [Homo
sapiens]
Length = 196
Score = 33.1 bits (74), Expect = 0.51
Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 21/111 (18%)
Query: 325 GRRKGSPGRLRGPPGADE---------------AEEVEADEQHPLAAAPPRVVVERRAAA 369
GR + PG+ R +E +++ E D+Q P P R E
Sbjct: 69 GRSRSHPGQGRSGESVEEVPLYGNLHYLQTGRLSQDPEPDQQDPTLGGPARAAEEVMCYT 128
Query: 370 VLALRDDRFVVLVVLHGAGCGASLPPREDVPQQQPHTQAPGVQPGLPASNC 420
L LR + + G G + E V +P +QA G +P L AS C
Sbjct: 129 SLQLRPPQGRI------PGPGTPVKYSEVVLDSEPKSQASGPEPELYASVC 173
>gi|4503489 ephrin-B3 precursor [Homo sapiens]
Length = 340
Score = 32.7 bits (73), Expect = 0.67
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 314 GGIGEGGGFGPGRRKGSPGR----LRG-----PPGADEAEEVEADEQHPL 354
G +G GGG G G R+ PG LRG PP E+V D HP+
Sbjct: 273 GSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVSGDYGHPV 322
>gi|114145479 neuroepithelial cell transforming gene 1 isoform 1
[Homo sapiens]
Length = 596
Score = 32.3 bits (72), Expect = 0.87
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
Query: 324 PGRRKGSPGRLRGPPGADEAEEVEADEQHPLAAAPPRVVVERRAAAVLALRDDRFVVLVV 383
P + GSP L+G P E E + HP A ++ +RRA+ V ++ V V
Sbjct: 502 PFQSAGSPPELQGLPELHE----ECEGNHPSAR---KLTAQRRASTVSSVTQ----VEVD 550
Query: 384 LHGAGCGASLPPREDVPQQQPHTQAPGVQ 412
+ CG+ + ED + H PG++
Sbjct: 551 ENAYRCGSGMQMAEDSKSLKTHQTQPGIR 579
>gi|19923327 neuroepithelial cell transforming gene 1 isoform 2
[Homo sapiens]
Length = 542
Score = 32.3 bits (72), Expect = 0.87
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
Query: 324 PGRRKGSPGRLRGPPGADEAEEVEADEQHPLAAAPPRVVVERRAAAVLALRDDRFVVLVV 383
P + GSP L+G P E E + HP A ++ +RRA+ V ++ V V
Sbjct: 448 PFQSAGSPPELQGLPELHE----ECEGNHPSAR---KLTAQRRASTVSSVTQ----VEVD 496
Query: 384 LHGAGCGASLPPREDVPQQQPHTQAPGVQ 412
+ CG+ + ED + H PG++
Sbjct: 497 ENAYRCGSGMQMAEDSKSLKTHQTQPGIR 525
>gi|13994190 frizzled 8 [Homo sapiens]
Length = 694
Score = 32.3 bits (72), Expect = 0.87
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 277 GIPPGLPTWR-RLLLSWFNSCPRTLKHAQTHSSTGQEVGGIGEGGGFGP-GRRKGSPGRL 334
GI G+ W + L SW + C R A ++ G G GGG GP G G PG
Sbjct: 597 GITSGVWVWSGKTLESWRSLCTRCC-WASKGAAVGGGAGATAAGGGGGPGGGGGGGPGGG 655
Query: 335 RGPPG 339
GP G
Sbjct: 656 GGPGG 660
>gi|238776833 THO complex 4 [Homo sapiens]
Length = 264
Score = 32.0 bits (71), Expect = 1.1
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 275 FRGIP-PGLPTWRRLLLSWFNSCPRTLKHAQTHSST-GQEVGGIGEGGGFGPGRRKGSPG 332
+ G+P G P +L+ S ++ R + T + GG G GGG G R G+ G
Sbjct: 173 YNGVPLDGRPMNIQLVTSQIDAQRRPAQSVNRGGMTRNRGAGGFGGGGGTRRGTRGGARG 232
Query: 333 RLRGPPGADEAEEVEADE 350
R RG G + +++ A+E
Sbjct: 233 RGRG-AGRNSKQQLSAEE 249
>gi|113419362 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 31.6 bits (70), Expect = 1.5
Identities = 30/100 (30%), Positives = 37/100 (37%), Gaps = 5/100 (5%)
Query: 247 GTQVIAEAVPSTKPGESTYRRGARRTHTFRGIPPGLPTWRRLLLSWFNSCPRTLKHAQTH 306
G+ V+ A S PG + R H PP P RR +LS C L T+
Sbjct: 30 GSPVLCAAALSGGPGRAAGSAIGRGAHLSPSRPPAAPPPRREVLS-SPGCCAALAGGDTN 88
Query: 307 SS---TGQEVGGIGEGGGFGPGRRK-GSPGRLRGPPGADE 342
G G G G GRR +PG L P A +
Sbjct: 89 GEWILRGSTWGLCPPSPGCGAGRRALATPGPLESPAAAQD 128
>gi|113418886 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 31.6 bits (70), Expect = 1.5
Identities = 30/100 (30%), Positives = 37/100 (37%), Gaps = 5/100 (5%)
Query: 247 GTQVIAEAVPSTKPGESTYRRGARRTHTFRGIPPGLPTWRRLLLSWFNSCPRTLKHAQTH 306
G+ V+ A S PG + R H PP P RR +LS C L T+
Sbjct: 30 GSPVLCAAALSGGPGRAAGSAIGRGAHLSPSRPPAAPPPRREVLS-SPGCCAALAGGDTN 88
Query: 307 SS---TGQEVGGIGEGGGFGPGRRK-GSPGRLRGPPGADE 342
G G G G GRR +PG L P A +
Sbjct: 89 GEWILRGSTWGLCPPSPGCGAGRRALATPGPLESPAAAQD 128
>gi|113419893 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 31.6 bits (70), Expect = 1.5
Identities = 30/100 (30%), Positives = 37/100 (37%), Gaps = 5/100 (5%)
Query: 247 GTQVIAEAVPSTKPGESTYRRGARRTHTFRGIPPGLPTWRRLLLSWFNSCPRTLKHAQTH 306
G+ V+ A S PG + R H PP P RR +LS C L T+
Sbjct: 30 GSPVLCAAALSGGPGRAAGSAIGRGAHLSPSRPPAAPPPRREVLS-SPGCCAALAGGDTN 88
Query: 307 SS---TGQEVGGIGEGGGFGPGRRK-GSPGRLRGPPGADE 342
G G G G GRR +PG L P A +
Sbjct: 89 GEWILRGSTWGLCPPSPGCGAGRRALATPGPLESPAAAQD 128
>gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 31.6 bits (70), Expect = 1.5
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 298 RTLKHAQTHSSTGQEVGGIGEGGGFGPGRRKGSPGRLRGPP 338
R + +T + T + VGGIG GGG G +G P +L+ PP
Sbjct: 560 RNPRAGRTLTYTAKPVGGIGGGGGPPTGAGRG-PSQLQAPP 599
>gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 31.6 bits (70), Expect = 1.5
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 298 RTLKHAQTHSSTGQEVGGIGEGGGFGPGRRKGSPGRLRGPP 338
R + +T + T + VGGIG GGG G +G P +L+ PP
Sbjct: 560 RNPRAGRTLTYTAKPVGGIGGGGGPPTGAGRG-PSQLQAPP 599
>gi|239756880 PREDICTED: hypothetical protein [Homo sapiens]
Length = 376
Score = 31.2 bits (69), Expect = 1.9
Identities = 24/55 (43%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 356 AAPPRVVVERRAAAVLALRDDRFVVLVVLHGAGCGASLPPRE-DVPQQQPHTQAP 409
A+PPR A+ VL LRD V GAGC S PPR D QQ Q+P
Sbjct: 238 ASPPREGAFAGASPVLRLRD---VGTERESGAGCLRSAPPRAGDARQQTQRCQSP 289
>gi|239751374 PREDICTED: hypothetical protein XP_002347830 [Homo
sapiens]
Length = 376
Score = 31.2 bits (69), Expect = 1.9
Identities = 24/55 (43%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 356 AAPPRVVVERRAAAVLALRDDRFVVLVVLHGAGCGASLPPRE-DVPQQQPHTQAP 409
A+PPR A+ VL LRD V GAGC S PPR D QQ Q+P
Sbjct: 238 ASPPREGAFAGASPVLRLRD---VGTERESGAGCLRSAPPRAGDARQQTQRCQSP 289
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 31.2 bits (69), Expect = 1.9
Identities = 29/132 (21%), Positives = 47/132 (35%), Gaps = 5/132 (3%)
Query: 214 IREMGLITPAAPSQRVGELKLMPLKPPTTWHTVGTQVIAEAVPSTKPGESTYRRGARRTH 273
++ +G P A S+ + + P P A P++ S+ G ++
Sbjct: 54 LQSLGNAAPHAKSKELNGSCMRPGLAPEPLSAPPGSPPPSAAPTSATSNSSNGGGPSKSG 113
Query: 274 TFRGIPPGLPTWRRLLLSWFNSCPRTLKHAQTHSSTGQEVGGIGEGGGFG-----PGRRK 328
+ P T + + W +T K T + GG G GGG G G
Sbjct: 114 PPKCGPGTNSTLTKQIFPWMKESRQTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGG 173
Query: 329 GSPGRLRGPPGA 340
G G + PPG+
Sbjct: 174 GGGGGDKSPPGS 185
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,517,050
Number of Sequences: 37866
Number of extensions: 1080402
Number of successful extensions: 4837
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 4698
Number of HSP's gapped (non-prelim): 197
length of query: 438
length of database: 18,247,518
effective HSP length: 105
effective length of query: 333
effective length of database: 14,271,588
effective search space: 4752438804
effective search space used: 4752438804
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.