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Search of human proteins with 239747205
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747205 PREDICTED: hypothetical protein XP_002346408 [Homo
sapiens]
(152 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747205 PREDICTED: hypothetical protein XP_002346408 [Homo ... 307 3e-84
gi|239752657 PREDICTED: hypothetical protein [Homo sapiens] 178 2e-45
gi|239741001 PREDICTED: hypothetical protein XP_002342060 [Homo ... 178 2e-45
gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens] 33 0.072
gi|209954781 neurotrophic factor artemin isoform 1 precursor [Ho... 33 0.072
gi|209954778 neurotrophic factor artemin isoform 3 precursor [Ho... 33 0.072
gi|209954776 neurotrophic factor artemin isoform 1 precursor [Ho... 33 0.072
gi|209977029 neurotrophic factor artemin isoform 3 precursor [Ho... 33 0.072
gi|113426528 PREDICTED: similar to hCG2042536 [Homo sapiens] 33 0.12
gi|113426210 PREDICTED: similar to hCG2042536 [Homo sapiens] 33 0.12
gi|239753324 PREDICTED: hypothetical protein [Homo sapiens] 32 0.16
gi|169163057 PREDICTED: hypothetical protein [Homo sapiens] 32 0.16
gi|239749693 PREDICTED: similar to hCG1806822 [Homo sapiens] 32 0.21
gi|115648140 hypothetical protein LOC23732 [Homo sapiens] 32 0.21
gi|239755571 PREDICTED: hypothetical protein [Homo sapiens] 32 0.27
gi|169161029 PREDICTED: hypothetical protein [Homo sapiens] 32 0.27
gi|169218002 PREDICTED: hypothetical protein [Homo sapiens] 32 0.27
gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens] 32 0.27
gi|75677394 transcription factor 23 [Homo sapiens] 32 0.27
gi|76881819 sterile alpha motif domain containing 11 [Homo sapiens] 32 0.27
gi|239757960 PREDICTED: hypothetical protein [Homo sapiens] 31 0.36
gi|91208420 bassoon protein [Homo sapiens] 31 0.36
gi|4507205 serum response factor (c-fos serum response element-b... 31 0.36
gi|169218206 PREDICTED: similar to hCG2042704 [Homo sapiens] 31 0.46
gi|239745938 PREDICTED: hypothetical protein [Homo sapiens] 31 0.46
gi|93204879 PR domain containing 15 isoform 1 [Homo sapiens] 31 0.46
gi|239753271 PREDICTED: similar to ankyrin repeat domain 36 [Hom... 30 0.61
gi|194578898 hypothetical protein LOC100170841 [Homo sapiens] 30 0.61
gi|117938759 GNAS complex locus XLas [Homo sapiens] 30 0.79
gi|169171269 PREDICTED: similar to forkhead box L2 [Homo sapiens] 30 0.79
>gi|239747205 PREDICTED: hypothetical protein XP_002346408 [Homo
sapiens]
Length = 152
Score = 307 bits (786), Expect = 3e-84
Identities = 152/152 (100%), Positives = 152/152 (100%)
Query: 1 MGAPAGAGKICAKAGALRSPARPRPCPGGGPRSLLLRRLRRAPLAVGPWAPGRSGRAKGP 60
MGAPAGAGKICAKAGALRSPARPRPCPGGGPRSLLLRRLRRAPLAVGPWAPGRSGRAKGP
Sbjct: 1 MGAPAGAGKICAKAGALRSPARPRPCPGGGPRSLLLRRLRRAPLAVGPWAPGRSGRAKGP 60
Query: 61 RGRRLLEEVGSALGDDDIDDVVAARQCGASFTWAWGAAVAGAVARRAPGGRLRVGFGDRQ 120
RGRRLLEEVGSALGDDDIDDVVAARQCGASFTWAWGAAVAGAVARRAPGGRLRVGFGDRQ
Sbjct: 61 RGRRLLEEVGSALGDDDIDDVVAARQCGASFTWAWGAAVAGAVARRAPGGRLRVGFGDRQ 120
Query: 121 VEDAAFVQATVMVVQVAGVGALVGDLQRLDTQ 152
VEDAAFVQATVMVVQVAGVGALVGDLQRLDTQ
Sbjct: 121 VEDAAFVQATVMVVQVAGVGALVGDLQRLDTQ 152
>gi|239752657 PREDICTED: hypothetical protein [Homo sapiens]
Length = 168
Score = 178 bits (451), Expect = 2e-45
Identities = 90/104 (86%), Positives = 94/104 (90%)
Query: 49 WAPGRSGRAKGPRGRRLLEEVGSALGDDDIDDVVAARQCGASFTWAWGAAVAGAVARRAP 108
W+ + +G +LLEEVGSALGDDDIDDVVAARQCGASFTWAWGAAVAGAVARRAP
Sbjct: 65 WSQQDEEQQRGQHVAQLLEEVGSALGDDDIDDVVAARQCGASFTWAWGAAVAGAVARRAP 124
Query: 109 GGRLRVGFGDRQVEDAAFVQATVMVVQVAGVGALVGDLQRLDTQ 152
GGRLRVGFGDRQVEDAAFVQATVMVVQVAGVGALVGDLQRLDTQ
Sbjct: 125 GGRLRVGFGDRQVEDAAFVQATVMVVQVAGVGALVGDLQRLDTQ 168
>gi|239741001 PREDICTED: hypothetical protein XP_002342060 [Homo
sapiens]
Length = 168
Score = 178 bits (451), Expect = 2e-45
Identities = 90/104 (86%), Positives = 94/104 (90%)
Query: 49 WAPGRSGRAKGPRGRRLLEEVGSALGDDDIDDVVAARQCGASFTWAWGAAVAGAVARRAP 108
W+ + +G +LLEEVGSALGDDDIDDVVAARQCGASFTWAWGAAVAGAVARRAP
Sbjct: 65 WSQQDEEQQRGQHVAQLLEEVGSALGDDDIDDVVAARQCGASFTWAWGAAVAGAVARRAP 124
Query: 109 GGRLRVGFGDRQVEDAAFVQATVMVVQVAGVGALVGDLQRLDTQ 152
GGRLRVGFGDRQVEDAAFVQATVMVVQVAGVGALVGDLQRLDTQ
Sbjct: 125 GGRLRVGFGDRQVEDAAFVQATVMVVQVAGVGALVGDLQRLDTQ 168
>gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens]
Length = 237
Score = 33.5 bits (75), Expect = 0.072
Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 20 PARPRPCPGGGPRSLLLRRLRRAPLAVGPWAPGRSGRAKGPRGRRLLEEVGSALGDDDID 79
P+RP P P P +L R RA A GP + R+ A+G R R L V + D
Sbjct: 102 PSRPAPPPPAPPSAL--PRGGRAARAGGPGSRARAAGARGCRLRSQLVPVRALGLGHRSD 159
Query: 80 DVVAARQCGASFTWAWG------AAVAGAVARRAPGG 110
++V R C S A A++ GA A R P G
Sbjct: 160 ELVRFRFCSGSCRRARSPHDLSLASLLGAGALRPPPG 196
>gi|209954781 neurotrophic factor artemin isoform 1 precursor [Homo
sapiens]
Length = 220
Score = 33.5 bits (75), Expect = 0.072
Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 20 PARPRPCPGGGPRSLLLRRLRRAPLAVGPWAPGRSGRAKGPRGRRLLEEVGSALGDDDID 79
P+RP P P P +L R RA A GP + R+ A+G R R L V + D
Sbjct: 85 PSRPAPPPPAPPSAL--PRGGRAARAGGPGSRARAAGARGCRLRSQLVPVRALGLGHRSD 142
Query: 80 DVVAARQCGASFTWAWG------AAVAGAVARRAPGG 110
++V R C S A A++ GA A R P G
Sbjct: 143 ELVRFRFCSGSCRRARSPHDLSLASLLGAGALRPPPG 179
>gi|209954778 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 33.5 bits (75), Expect = 0.072
Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 20 PARPRPCPGGGPRSLLLRRLRRAPLAVGPWAPGRSGRAKGPRGRRLLEEVGSALGDDDID 79
P+RP P P P +L R RA A GP + R+ A+G R R L V + D
Sbjct: 93 PSRPAPPPPAPPSAL--PRGGRAARAGGPGSRARAAGARGCRLRSQLVPVRALGLGHRSD 150
Query: 80 DVVAARQCGASFTWAWG------AAVAGAVARRAPGG 110
++V R C S A A++ GA A R P G
Sbjct: 151 ELVRFRFCSGSCRRARSPHDLSLASLLGAGALRPPPG 187
>gi|209954776 neurotrophic factor artemin isoform 1 precursor [Homo
sapiens]
Length = 220
Score = 33.5 bits (75), Expect = 0.072
Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 20 PARPRPCPGGGPRSLLLRRLRRAPLAVGPWAPGRSGRAKGPRGRRLLEEVGSALGDDDID 79
P+RP P P P +L R RA A GP + R+ A+G R R L V + D
Sbjct: 85 PSRPAPPPPAPPSAL--PRGGRAARAGGPGSRARAAGARGCRLRSQLVPVRALGLGHRSD 142
Query: 80 DVVAARQCGASFTWAWG------AAVAGAVARRAPGG 110
++V R C S A A++ GA A R P G
Sbjct: 143 ELVRFRFCSGSCRRARSPHDLSLASLLGAGALRPPPG 179
>gi|209977029 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 33.5 bits (75), Expect = 0.072
Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 20 PARPRPCPGGGPRSLLLRRLRRAPLAVGPWAPGRSGRAKGPRGRRLLEEVGSALGDDDID 79
P+RP P P P +L R RA A GP + R+ A+G R R L V + D
Sbjct: 93 PSRPAPPPPAPPSAL--PRGGRAARAGGPGSRARAAGARGCRLRSQLVPVRALGLGHRSD 150
Query: 80 DVVAARQCGASFTWAWG------AAVAGAVARRAPGG 110
++V R C S A A++ GA A R P G
Sbjct: 151 ELVRFRFCSGSCRRARSPHDLSLASLLGAGALRPPPG 187
>gi|113426528 PREDICTED: similar to hCG2042536 [Homo sapiens]
Length = 847
Score = 32.7 bits (73), Expect = 0.12
Identities = 19/41 (46%), Positives = 22/41 (53%)
Query: 50 APGRSGRAKGPRGRRLLEEVGSALGDDDIDDVVAARQCGAS 90
A GR G A PR + +GSA GDDD DD R GA+
Sbjct: 125 AGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAA 165
>gi|113426210 PREDICTED: similar to hCG2042536 [Homo sapiens]
Length = 847
Score = 32.7 bits (73), Expect = 0.12
Identities = 19/41 (46%), Positives = 22/41 (53%)
Query: 50 APGRSGRAKGPRGRRLLEEVGSALGDDDIDDVVAARQCGAS 90
A GR G A PR + +GSA GDDD DD R GA+
Sbjct: 125 AGGRRGGAGAPREWNVAYALGSATGDDDEDDGGGPRLRGAA 165
>gi|239753324 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 32.3 bits (72), Expect = 0.16
Identities = 21/42 (50%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 12 AKAGALRSPARPRPCPGGGPRSLLLRRLRRAPLAVGPWAPGR 53
A AGA RSPA + P GGP SL RR P P PGR
Sbjct: 31 AGAGAGRSPAARQVAPPGGPSSLARTHSRRHPDHAPP--PGR 70
>gi|169163057 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 32.3 bits (72), Expect = 0.16
Identities = 21/42 (50%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 12 AKAGALRSPARPRPCPGGGPRSLLLRRLRRAPLAVGPWAPGR 53
A AGA RSPA + P GGP SL RR P P PGR
Sbjct: 31 AGAGAGRSPAARQVAPPGGPSSLARTHSRRHPDHAPP--PGR 70
>gi|239749693 PREDICTED: similar to hCG1806822 [Homo sapiens]
Length = 1180
Score = 32.0 bits (71), Expect = 0.21
Identities = 30/88 (34%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Query: 25 PCPGGGPRSLLLR-RLRRAPLAVGPWAPGRSGRAKGPRGRRLLEEVGSALGDDDIDDVVA 83
P G GPR LR R P A P AP G A+ P R VG+A G + A
Sbjct: 1060 PIGGPGPRGPSLRSHPRSGPCAGKPRAPRSRGAAEPPSRRVAAPGVGTAGGANKAAATRA 1119
Query: 84 ARQCGASFTWAWGAAVAGAVARRAPGGR 111
A+ A A V+G A GR
Sbjct: 1120 AQARDARSERPRRAFVSGGAGAAAAAGR 1147
>gi|115648140 hypothetical protein LOC23732 [Homo sapiens]
Length = 344
Score = 32.0 bits (71), Expect = 0.21
Identities = 27/81 (33%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 2 GAPAGAGKICAKAGALRSPARPRPCPGGGPRSLLLRRLRRAPLAVGPWAPGRSGRAKGPR 61
GAPA A + R PR PG LLL A A P G +GPR
Sbjct: 35 GAPAAARAAWLRDLCARMARPPRQHPGVWASLLLLLLTGPAACAASPADDGAGPGGRGPR 94
Query: 62 GRRLLEEVGSALGDDDIDDVV 82
GR A GD D+ V
Sbjct: 95 GR--------ARGDTGADEAV 107
>gi|239755571 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 31.6 bits (70), Expect = 0.27
Identities = 42/130 (32%), Positives = 46/130 (35%), Gaps = 39/130 (30%)
Query: 23 PRPCPGGGPRSLLLRRLRR-----APLAVGPWAPGRSGRAKG--------------PRGR 63
P P P PR LRR PLA GP + +GRA G PRGR
Sbjct: 84 PAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRAPGAMASPSGSSKATGKPRGR 143
Query: 64 ------------------RLLEEVGSALGDDDIDDVVAARQCGASFTWAWGAAV--AGAV 103
RLL E GSA DD D R+ + T G V AGA
Sbjct: 144 DGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAG 203
Query: 104 ARRAPGGRLR 113
R G R R
Sbjct: 204 VRGCRGCRGR 213
>gi|169161029 PREDICTED: hypothetical protein [Homo sapiens]
Length = 268
Score = 31.6 bits (70), Expect = 0.27
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 13/65 (20%)
Query: 6 GAGKICAKAGALRSPARPRPCPGGGPRSLLLRRLRRAPLAVGPW-----------APGRS 54
G+ + A+ G L RP PG PR +RLRR VG W APG
Sbjct: 66 GSPGVSAQGGPLEGTPRPA-APGAAPRPRR-QRLRRRRAKVGGWGCARARGLDRRAPGEG 123
Query: 55 GRAKG 59
GR+ G
Sbjct: 124 GRSPG 128
>gi|169218002 PREDICTED: hypothetical protein [Homo sapiens]
Length = 218
Score = 31.6 bits (70), Expect = 0.27
Identities = 20/40 (50%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 14 AGALRSPARPRPCPGGGPRSLLLRRLRRAPLAVGPWAPGR 53
AGA RSPA + P GGP SL RR P P PGR
Sbjct: 6 AGAGRSPAARQVAPPGGPSSLARTHSRRHPDHAPP--PGR 43
>gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens]
Length = 364
Score = 31.6 bits (70), Expect = 0.27
Identities = 42/130 (32%), Positives = 46/130 (35%), Gaps = 39/130 (30%)
Query: 23 PRPCPGGGPRSLLLRRLRR-----APLAVGPWAPGRSGRAKG--------------PRGR 63
P P P PR LRR PLA GP + +GRA G PRGR
Sbjct: 187 PAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRAPGAMASPSGSSKATGKPRGR 246
Query: 64 ------------------RLLEEVGSALGDDDIDDVVAARQCGASFTWAWGAAV--AGAV 103
RLL E GSA DD D R+ + T G V AGA
Sbjct: 247 DGRPRREEDDVTPEEKRLRLLLEEGSAQPDDGEDAPRPGRKETGTQTGGDGRGVSDAGAG 306
Query: 104 ARRAPGGRLR 113
R G R R
Sbjct: 307 VRGCRGCRGR 316
>gi|75677394 transcription factor 23 [Homo sapiens]
Length = 214
Score = 31.6 bits (70), Expect = 0.27
Identities = 29/86 (33%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
Query: 2 GAPAGAGKICAKAGALRSPARPRPCPGGGPRSLLLRRLRRAPLAVGPWAPGRSGRA-KGP 60
G PA G G ++ A+ R PG + L R R+ P W+ R RA GP
Sbjct: 8 GPPAMPG-----VGHSQTQAKARLLPGADRKRSRLSRTRQDPWEERSWSNQRWSRATPGP 62
Query: 61 RGRRLLEEVGSALGDDDIDDVVAARQ 86
RG R G ALG + AAR+
Sbjct: 63 RGTR---AGGLALGRSEASPENAARE 85
>gi|76881819 sterile alpha motif domain containing 11 [Homo sapiens]
Length = 681
Score = 31.6 bits (70), Expect = 0.27
Identities = 33/100 (33%), Positives = 39/100 (39%), Gaps = 6/100 (6%)
Query: 23 PRPCPGGGPRSLLLRRLRRAPLAVGPW-APGRSGRAKGPRGRRLLEEVGS----ALGDDD 77
P+ PG GP + RRAP GP A R +K G RL + GS D
Sbjct: 412 PQGPPGSGPPTPSRDSARRAPRKGGPGPASARPSESKEMTGARLWAQDGSEDEPPKDSDG 471
Query: 78 IDDVVAARQCGASFTWAWGAAVAGAVARRA-PGGRLRVGF 116
D AA C A AGA + PG L +GF
Sbjct: 472 EDPETAAVGCRGPTPGQAPAGGAGAEGKGLFPGSTLPLGF 511
>gi|239757960 PREDICTED: hypothetical protein [Homo sapiens]
Length = 292
Score = 31.2 bits (69), Expect = 0.36
Identities = 23/49 (46%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Query: 5 AGAGKICAKAGALRSPARPRPCPGGGPRSLLLRRLRRAPLAVGPWAPGR 53
AGAG AGA R PA + P GGP SL RR P P PGR
Sbjct: 9 AGAG-----AGAGRRPAARQVAPPGGPXSLARTHSRRHPDHAPP--PGR 50
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 31.2 bits (69), Expect = 0.36
Identities = 32/83 (38%), Positives = 37/83 (44%), Gaps = 23/83 (27%)
Query: 3 APAGAGKICAKAGALRSPA-------RPRPCPGGGPRSLLLRRLRRAPL----AVGP--- 48
APAG G++ A AGA RS A P P PG GP S R + PL A P
Sbjct: 39 APAGGGQLPA-AGAARSTAVPPVPGPGPGPGPGPGPGSTSRRLDPKEPLGNQRAASPTPK 97
Query: 49 ----WAPG----RSGRAKGPRGR 63
PG R RA+GP G+
Sbjct: 98 QASATTPGHESPRETRAQGPAGQ 120
Score = 27.3 bits (59), Expect = 5.1
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 5 AGAGKICAKAGALRSPARPRPCPGGGPRSLLLRRL 39
A +G+ AK G + RPRP P P +L RRL
Sbjct: 863 ATSGRGLAKHGTQKGGPRPRPEPSQEPAALPKRRL 897
>gi|4507205 serum response factor (c-fos serum response
element-binding transcription factor) [Homo sapiens]
Length = 508
Score = 31.2 bits (69), Expect = 0.36
Identities = 38/136 (27%), Positives = 53/136 (38%), Gaps = 25/136 (18%)
Query: 2 GAPAGAGKICAKAGALRSPARPRPCPGGGPR------------SLLLRRLRRAPLAVGPW 49
GA A G+ A G+L RP GGG R L RL R A
Sbjct: 7 GAAAALGRGSALGGSLNRTPTGRPGGGGGTRGANGGRVPGNGAGLGPGRLEREAAAAAAT 66
Query: 50 APGRSGRA-----KGPRGRRLLEEVGS-------ALGDDDIDDVVAARQCGASFTWAWGA 97
P + A +G EE+G+ +L + +I VV + A+ T +G
Sbjct: 67 TPAPTAGALYSGSEGDSESGEEEELGAERRGLKRSLSEMEIGMVVGGPEASAAATGGYG- 125
Query: 98 AVAGAVARRAPGGRLR 113
V+GAV+ PG + R
Sbjct: 126 PVSGAVSGAKPGKKTR 141
>gi|169218206 PREDICTED: similar to hCG2042704 [Homo sapiens]
Length = 317
Score = 30.8 bits (68), Expect = 0.46
Identities = 26/63 (41%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 19 SPARPRPCPGGGPRSLLLRRLRRAPLAVGPWAPG-RSGRAKGPRGRRLLEEVGSALGDDD 77
SP PRP G GP L AP A+G PG RS R G G + G GDDD
Sbjct: 70 SPPPPRPFRGRGPHRSL--GCDAAPAALGNGRPGARSDRPCGAGG----DGGGRLPGDDD 123
Query: 78 IDD 80
+D
Sbjct: 124 DND 126
>gi|239745938 PREDICTED: hypothetical protein [Homo sapiens]
Length = 336
Score = 30.8 bits (68), Expect = 0.46
Identities = 30/76 (39%), Positives = 33/76 (43%), Gaps = 14/76 (18%)
Query: 2 GAPAGAGKICAKAGALRSPARPRPCPGGGPRSLLLRRLRRAPLAVGPWAPGRS-----GR 56
GA AGAG A AGA RS A C G PR L+ R GR GR
Sbjct: 228 GAGAGAG---AGAGAQRSAAEAAGCLGCLPRLPLMSEPRTGEKGKRRRRDGRGWGGLRGR 284
Query: 57 AKGPR------GRRLL 66
A GPR G+RL+
Sbjct: 285 AGGPRSAEAGGGKRLI 300
>gi|93204879 PR domain containing 15 isoform 1 [Homo sapiens]
Length = 1507
Score = 30.8 bits (68), Expect = 0.46
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 17/97 (17%)
Query: 20 PARPRPCPGGG-----PRSLLLRRLRRAPLAV---GPWAPGRSGRAKGPRGRRLLEEVGS 71
PA PRP P GG P +++ R R P+ V GPW P + R E S
Sbjct: 89 PAAPRPPPPGGVVAEAPGDVVIPRPRVQPMRVARGGPWTPNPAFRE---------AESWS 139
Query: 72 ALGDDDIDDVVAARQCGASFTWAWGAAVAGAVARRAP 108
+G+ + + + G + + A A RR P
Sbjct: 140 QIGNQRVSEQLLETSLGNEVSDTEPLSPASAGLRRNP 176
>gi|239753271 PREDICTED: similar to ankyrin repeat domain 36 [Homo
sapiens]
Length = 501
Score = 30.4 bits (67), Expect = 0.61
Identities = 38/131 (29%), Positives = 50/131 (38%), Gaps = 28/131 (21%)
Query: 11 CAKAGALRSPARPRPCPGG----GPRSLLL----RRLRRAPLAVGP-WAPGRSGR----- 56
C +GA R +P PGG RS L +L RA +GP A GRS
Sbjct: 220 CGPSGATRPKTGAQPHPGGCGVPSARSCALGVGQEQLARAAQPMGPLGAAGRSSGKPRQP 279
Query: 57 ------------AKGPRGRRLLEEVGSALGDDDIDDVVAARQ--CGASFTWAWGAAVAGA 102
++GPRG + ++ ++ D + AA Q CG S V A
Sbjct: 280 TGAAAAAATSTWSRGPRGLGIPDQACASSRADPGASLAAASQAVCGRSAGHGLRPGVQEA 339
Query: 103 VARRAPGGRLR 113
R GG LR
Sbjct: 340 RTLRPDGGALR 350
>gi|194578898 hypothetical protein LOC100170841 [Homo sapiens]
Length = 379
Score = 30.4 bits (67), Expect = 0.61
Identities = 36/107 (33%), Positives = 45/107 (42%), Gaps = 10/107 (9%)
Query: 10 ICAKAGALRSPARPRPCP-GGGPRSLLLR----RLRRAPLAVGPWAPGRSGRAKGPRGRR 64
+C +A A + A+PR G GP L R R +APL G WAP P GR
Sbjct: 38 LCLRALAFCALAKPRASSLGPGPGELAARSPVLRGPQAPLRPGGWAPDGLKHLWAPTGRP 97
Query: 65 LLEEVGSALGDDDIDDVVAARQCGASFTWAWGAAVAGAVARRAPGGR 111
+ +A G+D DV A + G G G V AP GR
Sbjct: 98 GVP--NTAAGED--ADVAACPRRGEEEEGGGGFPHFG-VRSCAPPGR 139
>gi|117938759 GNAS complex locus XLas [Homo sapiens]
Length = 1037
Score = 30.0 bits (66), Expect = 0.79
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 2 GAPAGAGKICAKAGALRSPARPRPCPGGGPRSLLLRRLRRAPLAVGPWAPGRS------G 55
GAP +A +R A P G R + LR A P P + G
Sbjct: 495 GAPTAPAASATRAAQVRRAASAAPA-SGARRKIHLRPPSPEIQAADPPTPRPTRASAWRG 553
Query: 56 RAKGPRGRRLLEEVGSALGDDD 77
+++ RGRR+ + G A DDD
Sbjct: 554 KSESSRGRRVYYDEGVASSDDD 575
>gi|169171269 PREDICTED: similar to forkhead box L2 [Homo sapiens]
Length = 632
Score = 30.0 bits (66), Expect = 0.79
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 37 RRLRRAPLAVGPWAPGRSGRAKGPRGRRLLEEVGSALGDDDIDDVVAARQCGAS 90
RR RR P GP P R+G A+GP G L L D + R+ AS
Sbjct: 128 RRRRRGPKREGPRGP-RAGGAQGPSGPSELPAAQGRLAPDSAGEGAPGREPPAS 180
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.139 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,719,329
Number of Sequences: 37866
Number of extensions: 380161
Number of successful extensions: 1828
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 1750
Number of HSP's gapped (non-prelim): 178
length of query: 152
length of database: 18,247,518
effective HSP length: 93
effective length of query: 59
effective length of database: 14,725,980
effective search space: 868832820
effective search space used: 868832820
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.