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Search of human proteins with 239747027
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747027 PREDICTED: hypothetical protein XP_002343909 [Homo
sapiens]
(160 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169217399 PREDICTED: hypothetical protein [Homo sapiens] 336 4e-93
gi|89061367 PREDICTED: hypothetical protein [Homo sapiens] 336 4e-93
gi|239747027 PREDICTED: hypothetical protein XP_002343909 [Homo ... 336 4e-93
gi|113423714 PREDICTED: similar to hCG1984643 [Homo sapiens] 157 3e-39
gi|113423308 PREDICTED: similar to hCG1984643 [Homo sapiens] 157 3e-39
gi|169204653 PREDICTED: similar to hCG1984643 [Homo sapiens] 156 8e-39
gi|118402590 myosin XV [Homo sapiens] 36 0.012
gi|46559747 hypothetical protein LOC399947 [Homo sapiens] 35 0.036
gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens] 32 0.18
gi|209693464 ubiquitin related modifier 1 homolog isoform b [Hom... 32 0.23
gi|111120318 NK6 transcription factor related, locus 1 [Homo sap... 32 0.30
gi|22538422 activating transcription factor 2 [Homo sapiens] 31 0.40
gi|126090663 zinc finger homeodomain 4 [Homo sapiens] 31 0.40
gi|110347437 latent transforming growth factor beta binding prot... 31 0.52
gi|110347412 latent transforming growth factor beta binding prot... 31 0.52
gi|110347431 latent transforming growth factor beta binding prot... 31 0.52
gi|148839382 ring finger protein 169 [Homo sapiens] 31 0.52
gi|119943102 CREB binding protein isoform b [Homo sapiens] 30 0.88
gi|119943104 CREB binding protein isoform a [Homo sapiens] 30 0.88
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 30 0.88
gi|58530876 melanoma antigen family C, 1 [Homo sapiens] 30 1.2
gi|144953895 nidogen 2 precursor [Homo sapiens] 29 2.0
gi|209969812 ankyrin repeat domain 25 [Homo sapiens] 29 2.0
gi|31324547 ankyrin repeat domain 25 [Homo sapiens] 29 2.0
gi|45238854 basic leucine zipper transcription factor, ATF-like ... 29 2.0
gi|239752904 PREDICTED: hypothetical protein [Homo sapiens] 28 2.6
gi|239747453 PREDICTED: hypothetical protein XP_002347537 [Homo ... 28 2.6
gi|239741327 PREDICTED: hypothetical protein XP_002342174 [Homo ... 28 2.6
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 28 2.6
gi|32171215 CREB regulated transcription coactivator 2 [Homo sap... 28 3.4
>gi|169217399 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 336 bits (862), Expect = 4e-93
Identities = 160/160 (100%), Positives = 160/160 (100%)
Query: 1 MPARLQALPPLQSHAAWIGTTLSHSSPAARLLSPSTPEHCGPPRCTFCRLPRGSSHSRQG 60
MPARLQALPPLQSHAAWIGTTLSHSSPAARLLSPSTPEHCGPPRCTFCRLPRGSSHSRQG
Sbjct: 1 MPARLQALPPLQSHAAWIGTTLSHSSPAARLLSPSTPEHCGPPRCTFCRLPRGSSHSRQG 60
Query: 61 HALDHLGAALLLSEDARGVHPLHRLRALWLVSIPPTLQGFPRLMNSQASTTSGLLSLCSQ 120
HALDHLGAALLLSEDARGVHPLHRLRALWLVSIPPTLQGFPRLMNSQASTTSGLLSLCSQ
Sbjct: 61 HALDHLGAALLLSEDARGVHPLHRLRALWLVSIPPTLQGFPRLMNSQASTTSGLLSLCSQ 120
Query: 121 ESGIPFCPPCHGGIVLVPSPPLLQGPLSPHPPSAARAAQG 160
ESGIPFCPPCHGGIVLVPSPPLLQGPLSPHPPSAARAAQG
Sbjct: 121 ESGIPFCPPCHGGIVLVPSPPLLQGPLSPHPPSAARAAQG 160
>gi|89061367 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 336 bits (862), Expect = 4e-93
Identities = 160/160 (100%), Positives = 160/160 (100%)
Query: 1 MPARLQALPPLQSHAAWIGTTLSHSSPAARLLSPSTPEHCGPPRCTFCRLPRGSSHSRQG 60
MPARLQALPPLQSHAAWIGTTLSHSSPAARLLSPSTPEHCGPPRCTFCRLPRGSSHSRQG
Sbjct: 1 MPARLQALPPLQSHAAWIGTTLSHSSPAARLLSPSTPEHCGPPRCTFCRLPRGSSHSRQG 60
Query: 61 HALDHLGAALLLSEDARGVHPLHRLRALWLVSIPPTLQGFPRLMNSQASTTSGLLSLCSQ 120
HALDHLGAALLLSEDARGVHPLHRLRALWLVSIPPTLQGFPRLMNSQASTTSGLLSLCSQ
Sbjct: 61 HALDHLGAALLLSEDARGVHPLHRLRALWLVSIPPTLQGFPRLMNSQASTTSGLLSLCSQ 120
Query: 121 ESGIPFCPPCHGGIVLVPSPPLLQGPLSPHPPSAARAAQG 160
ESGIPFCPPCHGGIVLVPSPPLLQGPLSPHPPSAARAAQG
Sbjct: 121 ESGIPFCPPCHGGIVLVPSPPLLQGPLSPHPPSAARAAQG 160
>gi|239747027 PREDICTED: hypothetical protein XP_002343909 [Homo
sapiens]
Length = 160
Score = 336 bits (862), Expect = 4e-93
Identities = 160/160 (100%), Positives = 160/160 (100%)
Query: 1 MPARLQALPPLQSHAAWIGTTLSHSSPAARLLSPSTPEHCGPPRCTFCRLPRGSSHSRQG 60
MPARLQALPPLQSHAAWIGTTLSHSSPAARLLSPSTPEHCGPPRCTFCRLPRGSSHSRQG
Sbjct: 1 MPARLQALPPLQSHAAWIGTTLSHSSPAARLLSPSTPEHCGPPRCTFCRLPRGSSHSRQG 60
Query: 61 HALDHLGAALLLSEDARGVHPLHRLRALWLVSIPPTLQGFPRLMNSQASTTSGLLSLCSQ 120
HALDHLGAALLLSEDARGVHPLHRLRALWLVSIPPTLQGFPRLMNSQASTTSGLLSLCSQ
Sbjct: 61 HALDHLGAALLLSEDARGVHPLHRLRALWLVSIPPTLQGFPRLMNSQASTTSGLLSLCSQ 120
Query: 121 ESGIPFCPPCHGGIVLVPSPPLLQGPLSPHPPSAARAAQG 160
ESGIPFCPPCHGGIVLVPSPPLLQGPLSPHPPSAARAAQG
Sbjct: 121 ESGIPFCPPCHGGIVLVPSPPLLQGPLSPHPPSAARAAQG 160
>gi|113423714 PREDICTED: similar to hCG1984643 [Homo sapiens]
Length = 173
Score = 157 bits (398), Expect = 3e-39
Identities = 94/160 (58%), Positives = 100/160 (62%), Gaps = 18/160 (11%)
Query: 1 MPARLQALPPLQSHAAWIGTTLSHSSPAARLLSPSTPEHCGPPRCTFCRLPRGSSHSRQG 60
MPARLQA PLQ A IG LSHS PAA LLS S PEHC PRC F R PR S H RQG
Sbjct: 1 MPARLQASLPLQGRRARIGIPLSHS-PAAGLLSHSMPEHCRLPRCAFRRPPRASRHHRQG 59
Query: 61 HALDHLGAALLLSEDARGVHPLHRLRALWLVSIPPTLQGFPRLMNSQASTTSGLLSLCSQ 120
HALDH GAALLLS +ARG HPL RLR LW SIPPTLQGFPRL++SQASTTS L
Sbjct: 60 HALDHRGAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPRLLSSQASTTSDLFR---- 115
Query: 121 ESGIPFCPPCHGGIVLVPSPPLLQGPLSPHPPSAARAAQG 160
C P G P P +L +PP AA+G
Sbjct: 116 ----TVCAPRRQG----PGPTVL-----GYPPVLLLAAEG 142
>gi|113423308 PREDICTED: similar to hCG1984643 [Homo sapiens]
Length = 173
Score = 157 bits (398), Expect = 3e-39
Identities = 94/160 (58%), Positives = 100/160 (62%), Gaps = 18/160 (11%)
Query: 1 MPARLQALPPLQSHAAWIGTTLSHSSPAARLLSPSTPEHCGPPRCTFCRLPRGSSHSRQG 60
MPARLQA PLQ A IG LSHS PAA LLS S PEHC PRC F R PR S H RQG
Sbjct: 1 MPARLQASLPLQGRRARIGIPLSHS-PAAGLLSHSMPEHCRLPRCAFRRPPRASRHHRQG 59
Query: 61 HALDHLGAALLLSEDARGVHPLHRLRALWLVSIPPTLQGFPRLMNSQASTTSGLLSLCSQ 120
HALDH GAALLLS +ARG HPL RLR LW SIPPTLQGFPRL++SQASTTS L
Sbjct: 60 HALDHRGAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPRLLSSQASTTSDLFR---- 115
Query: 121 ESGIPFCPPCHGGIVLVPSPPLLQGPLSPHPPSAARAAQG 160
C P G P P +L +PP AA+G
Sbjct: 116 ----TVCAPRRQG----PGPTVL-----GYPPVLLLAAEG 142
>gi|169204653 PREDICTED: similar to hCG1984643 [Homo sapiens]
Length = 173
Score = 156 bits (394), Expect = 8e-39
Identities = 93/160 (58%), Positives = 100/160 (62%), Gaps = 18/160 (11%)
Query: 1 MPARLQALPPLQSHAAWIGTTLSHSSPAARLLSPSTPEHCGPPRCTFCRLPRGSSHSRQG 60
MPARLQA PLQ A IG LSHS PAA LLS S P+HC PRC F R PR S H RQG
Sbjct: 1 MPARLQASLPLQGRRARIGIPLSHS-PAAGLLSHSMPKHCRLPRCAFRRPPRASRHHRQG 59
Query: 61 HALDHLGAALLLSEDARGVHPLHRLRALWLVSIPPTLQGFPRLMNSQASTTSGLLSLCSQ 120
HALDH GAALLLS +ARG HPL RLR LW SIPPTLQGFPRL++SQASTTS L
Sbjct: 60 HALDHRGAALLLSGEARGFHPLPRLRVLWAASIPPTLQGFPRLLSSQASTTSDLFR---- 115
Query: 121 ESGIPFCPPCHGGIVLVPSPPLLQGPLSPHPPSAARAAQG 160
C P G P P +L +PP AA+G
Sbjct: 116 ----TVCAPRRQG----PGPTVL-----GYPPVLLLAAEG 142
>gi|118402590 myosin XV [Homo sapiens]
Length = 3530
Score = 36.2 bits (82), Expect = 0.012
Identities = 42/154 (27%), Positives = 59/154 (38%), Gaps = 18/154 (11%)
Query: 10 PLQSHAAWIGTTLSHSSPAARLLSPSTPEHCGPPRCTFCRLPRGSSHSRQGHALDHL--- 66
P S A ++ TLS P ARL GP R +++ R G+ L +
Sbjct: 568 PATSLARFLKKTLSEKKPIARLRGSQKARAGGPA-------VREAAYKRFGYKLAGMDPE 620
Query: 67 --GAALLLSEDARGVHPLHRLRALWLVSIPPTLQGFPRLMNSQASTTSGLLSLCSQESGI 124
G ++L R P R R+ PP Q PR ++ ++ S + SG
Sbjct: 621 KPGTPIVL----RRAQP--RARSSNDARRPPAPQPAPRTLSHWSALLSPPVPPRPPSSGP 674
Query: 125 PFCPPCHGGIVLVPSPPLLQGPLSPHPPSAARAA 158
P PP + +P P G L HPP A A
Sbjct: 675 PPAPPLSPALSGLPRPASPYGSLRRHPPPWAAPA 708
>gi|46559747 hypothetical protein LOC399947 [Homo sapiens]
Length = 197
Score = 34.7 bits (78), Expect = 0.036
Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 99 GFPRLMNSQASTTSGLLSLCSQESGIPFCPPCHGGIVLVPSPPL-LQGPLSPHPPSAARA 157
G PR QA T + L Q PFC P + + SP L QGP +P PP A +
Sbjct: 114 GLPR-PGRQAPTHAKETRLERQPRDSPFCAPSNASSLSSSSPGLPCQGPCAPPPPPPASS 172
Query: 158 AQG 160
QG
Sbjct: 173 PQG 175
>gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]
Length = 753
Score = 32.3 bits (72), Expect = 0.18
Identities = 39/160 (24%), Positives = 59/160 (36%), Gaps = 16/160 (10%)
Query: 1 MPARLQALPPLQSHAAWIGTTLSHSSPAARLLSPSTPEHCGPPRCTFCRLPRGSSHSRQG 60
+P L A P SH+ + SS + S+P P CT ++G
Sbjct: 234 IPQALVATSP-PSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCT---TENSEDDKKRG 289
Query: 61 HALDHLGAALLLSEDARGVHPLHRLRALWLVSIPPTLQGFPRLMNSQASTTSGLLSLCSQ 120
+ D + + S G P+H + ++PPT P S STT G
Sbjct: 290 RSTD---SEVSQSPAKNGSKPVHSNQHPQSPAVPPTYPSGPPPAASALSTTPG------- 339
Query: 121 ESGI--PFCPPCHGGIVLVPSPPLLQGPLSPHPPSAARAA 158
+G+ P PP G P+P G +P+ + A A
Sbjct: 340 NNGVPAPAAPPSALGPKASPAPSHNSGTPAPYAQAVAPPA 379
>gi|209693464 ubiquitin related modifier 1 homolog isoform b [Homo
sapiens]
Length = 146
Score = 32.0 bits (71), Expect = 0.23
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 12 QSHAAWIGTTLSHSSPAARLLSPSTP 37
Q+H W+G HSSP RLL TP
Sbjct: 105 QAHIEWLGNPPPHSSPTLRLLESPTP 130
>gi|111120318 NK6 transcription factor related, locus 1 [Homo
sapiens]
Length = 367
Score = 31.6 bits (70), Expect = 0.30
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 68 AALLLSEDARGVHPLHRLRA-LWLVSIPPTLQGFPRLMNSQASTTSGLLSLCSQESGIPF 126
A LL S +H + ++ L+ + PP G P +S +S++S L + G
Sbjct: 14 AFLLSSPPLAALHSMAEMKTPLYPAAYPPLPAGPPSSSSSSSSSSSPSPPLGTHNPG-GL 72
Query: 127 CPPCHGGIVLVPSPPLLQGPLSPH 150
PP GG+ + SPP +PH
Sbjct: 73 KPPATGGLSSLGSPPQQLSAATPH 96
>gi|22538422 activating transcription factor 2 [Homo sapiens]
Length = 505
Score = 31.2 bits (69), Expect = 0.40
Identities = 18/62 (29%), Positives = 26/62 (41%)
Query: 90 LVSIPPTLQGFPRLMNSQASTTSGLLSLCSQESGIPFCPPCHGGIVLVPSPPLLQGPLSP 149
+V +P L N Q + S+ S +P P + +VPS P + GP SP
Sbjct: 208 IVPVPGPFPLLLHLPNGQTMPVAIPASITSSNVHVPAAVPLVRPVTMVPSVPGIPGPSSP 267
Query: 150 HP 151
P
Sbjct: 268 QP 269
>gi|126090663 zinc finger homeodomain 4 [Homo sapiens]
Length = 3571
Score = 31.2 bits (69), Expect = 0.40
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 94 PPTLQGFPRLMNSQASTTSGLLSLCSQESGIPFCPPCHGGIVLVPSPPLLQGPLSPHPP 152
P +L GFP+ N+ +G+L + + P + P+ PLLQ P P PP
Sbjct: 3070 PSSLPGFPQNSNTLTPPGAGMLGFPTSATSSPAL-----SLSSAPTKPLLQTPPPPPPP 3123
>gi|110347437 latent transforming growth factor beta binding protein
4 isoform c [Homo sapiens]
Length = 1557
Score = 30.8 bits (68), Expect = 0.52
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 10 PLQSHAAWIGTTLSHSSPAARLLSPSTPEHCGPPRC 45
PL S AW G + S P++ + P+ CGP RC
Sbjct: 460 PLPSIPAWTGPEIPESGPSSGMCQ-RNPQVCGPGRC 494
>gi|110347412 latent transforming growth factor beta binding protein
4 isoform b [Homo sapiens]
Length = 1587
Score = 30.8 bits (68), Expect = 0.52
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 10 PLQSHAAWIGTTLSHSSPAARLLSPSTPEHCGPPRC 45
PL S AW G + S P++ + P+ CGP RC
Sbjct: 490 PLPSIPAWTGPEIPESGPSSGMCQ-RNPQVCGPGRC 524
>gi|110347431 latent transforming growth factor beta binding protein
4 isoform a [Homo sapiens]
Length = 1624
Score = 30.8 bits (68), Expect = 0.52
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 10 PLQSHAAWIGTTLSHSSPAARLLSPSTPEHCGPPRC 45
PL S AW G + S P++ + P+ CGP RC
Sbjct: 527 PLPSIPAWTGPEIPESGPSSGMCQ-RNPQVCGPGRC 561
>gi|148839382 ring finger protein 169 [Homo sapiens]
Length = 708
Score = 30.8 bits (68), Expect = 0.52
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 129 PCHGGIVLVPSPPLLQGPLSPHPPSAARA 157
P G +LV SPPLLQ PL P P + A
Sbjct: 41 PASGPSLLVLSPPLLQPPLPPRPEESGCA 69
>gi|119943102 CREB binding protein isoform b [Homo sapiens]
Length = 2404
Score = 30.0 bits (66), Expect = 0.88
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 137 VPSPPLLQGPLSPHPPSAARAA 158
+P PP+ Q PL P PP A+ AA
Sbjct: 805 LPCPPVTQSPLHPTPPPASTAA 826
>gi|119943104 CREB binding protein isoform a [Homo sapiens]
Length = 2442
Score = 30.0 bits (66), Expect = 0.88
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 137 VPSPPLLQGPLSPHPPSAARAA 158
+P PP+ Q PL P PP A+ AA
Sbjct: 843 LPCPPVTQSPLHPTPPPASTAA 864
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 30.0 bits (66), Expect = 0.88
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 10/72 (13%)
Query: 94 PPTLQGFPRLMNSQASTTSGLLSLC--------SQESGIPFCPPCHGGIVLVPSPPLLQG 145
PP + L + AS +S L SLC S SG P G ++P P +
Sbjct: 610 PPKPERVTSLRSPGASVSSSLTSLCSSSSDPAPSDRSGPQILTPL-GDRFVIPPHPKVPA 668
Query: 146 PLSPHPPSAARA 157
P SP PPS R+
Sbjct: 669 PFSP-PPSKPRS 679
>gi|58530876 melanoma antigen family C, 1 [Homo sapiens]
Length = 1142
Score = 29.6 bits (65), Expect = 1.2
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 23/78 (29%)
Query: 96 TLQGFPR----LMNSQASTTSGLLSL------CSQES---------GIPFCPP----CHG 132
T +GFP+ + S +S++S LLSL C+Q + IP PP H
Sbjct: 469 TFEGFPQSPLQIPVSSSSSSSTLLSLFQSSPECTQSTFEGFPQSPLQIPQSPPEGENTHS 528
Query: 133 GIVLVPSPPLLQGPLSPH 150
+ +VPS P + LSPH
Sbjct: 529 PLQIVPSLPEWEDSLSPH 546
>gi|144953895 nidogen 2 precursor [Homo sapiens]
Length = 1375
Score = 28.9 bits (63), Expect = 2.0
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 10 PLQSHAA----WIGTTLSHSSPAARLLSPSTPEHCGPPRCTFCRLPRGSSHSRQGHALDH 65
PLQ H + W H P + STP HCGP R P R+ + L+H
Sbjct: 971 PLQCHGSTGFCWCVDPDGHEVPGTQTPPGSTPPHCGPSPEPTQRPPTICERWRE-NLLEH 1029
Query: 66 LG 67
G
Sbjct: 1030 YG 1031
>gi|209969812 ankyrin repeat domain 25 [Homo sapiens]
Length = 851
Score = 28.9 bits (63), Expect = 2.0
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 96 TLQGFPRLMNSQASTTSGLLSLCSQESGIPFCPPCHGGIVLVPSPPLLQGPLSPHPPSAA 155
TL R + QA+T +GL SL +G G+ L P P G +P PPSA
Sbjct: 127 TLLDARRRLEDQAATPTGLGSLTPSAAG---STASLVGVGLPPPTPRSSGLSTPVPPSAG 183
Query: 156 RAA 158
A
Sbjct: 184 HLA 186
>gi|31324547 ankyrin repeat domain 25 [Homo sapiens]
Length = 851
Score = 28.9 bits (63), Expect = 2.0
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 96 TLQGFPRLMNSQASTTSGLLSLCSQESGIPFCPPCHGGIVLVPSPPLLQGPLSPHPPSAA 155
TL R + QA+T +GL SL +G G+ L P P G +P PPSA
Sbjct: 127 TLLDARRRLEDQAATPTGLGSLTPSAAG---STASLVGVGLPPPTPRSSGLSTPVPPSAG 183
Query: 156 RAA 158
A
Sbjct: 184 HLA 186
>gi|45238854 basic leucine zipper transcription factor, ATF-like 2
[Homo sapiens]
Length = 274
Score = 28.9 bits (63), Expect = 2.0
Identities = 30/107 (28%), Positives = 42/107 (39%), Gaps = 3/107 (2%)
Query: 2 PARLQALPPLQSHAAWIGTTLSHSSPAARLLSPSTPEHCGPPRCTFCRLP-RGSSHSRQG 60
P +L P L A+ G++L SS L PS PP+ P RG S
Sbjct: 167 PVQLSPSPLL--FASHTGSSLQGSSSKLSALQPSLTAQTAPPQPLELEHPTRGKLGSSPD 224
Query: 61 HALDHLGAALLLSEDARGVHPLHRLRALWLVSIPPTLQGFPRLMNSQ 107
+ LG A L S + + + L + P L FP L ++Q
Sbjct: 225 NPSSALGLARLQSREHKPALSAATWQGLVVDPSPHPLLAFPLLSSAQ 271
>gi|239752904 PREDICTED: hypothetical protein [Homo sapiens]
Length = 282
Score = 28.5 bits (62), Expect = 2.6
Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 19/100 (19%)
Query: 55 SHSRQGHALDHLGAALLLSEDARGVHPLHRLRALWLVSIPPTL-QGFP----RLMNSQAS 109
SH G GA LL A+ +L+ +PP L +G P R ++
Sbjct: 41 SHRAPGCRRACQGAGFLLDSSAQ-----------FLLLLPPGLARGLPHSQGRPQSAAGF 89
Query: 110 TTSGLLSLCSQESGI---PFCPPCHGGIVLVPSPPLLQGP 146
+ LS +ESG+ P PPC G + + P Q P
Sbjct: 90 PSHTRLSTAEEESGLCEGPAAPPCLGKLTWLQGEPTSQWP 129
>gi|239747453 PREDICTED: hypothetical protein XP_002347537 [Homo
sapiens]
Length = 282
Score = 28.5 bits (62), Expect = 2.6
Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 19/100 (19%)
Query: 55 SHSRQGHALDHLGAALLLSEDARGVHPLHRLRALWLVSIPPTL-QGFP----RLMNSQAS 109
SH G GA LL A+ +L+ +PP L +G P R ++
Sbjct: 41 SHRAPGCRRACQGAGFLLDSSAQ-----------FLLLLPPGLARGLPHSQGRPQSAAGF 89
Query: 110 TTSGLLSLCSQESGI---PFCPPCHGGIVLVPSPPLLQGP 146
+ LS +ESG+ P PPC G + + P Q P
Sbjct: 90 PSHTRLSTAEEESGLCEGPAAPPCLGKLTWLQGEPTSQWP 129
>gi|239741327 PREDICTED: hypothetical protein XP_002342174 [Homo
sapiens]
Length = 282
Score = 28.5 bits (62), Expect = 2.6
Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 19/100 (19%)
Query: 55 SHSRQGHALDHLGAALLLSEDARGVHPLHRLRALWLVSIPPTL-QGFP----RLMNSQAS 109
SH G GA LL A+ +L+ +PP L +G P R ++
Sbjct: 41 SHRAPGCRRACQGAGFLLDSSAQ-----------FLLLLPPGLARGLPHSQGRPQSAAGF 89
Query: 110 TTSGLLSLCSQESGI---PFCPPCHGGIVLVPSPPLLQGP 146
+ LS +ESG+ P PPC G + + P Q P
Sbjct: 90 PSHTRLSTAEEESGLCEGPAAPPCLGKLTWLQGEPTSQWP 129
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 28.5 bits (62), Expect = 2.6
Identities = 25/70 (35%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Query: 94 PPTLQGFPRLMNSQA------STTSGLLSLCSQESGIPFCPPCHGGIVLVPSPPLLQGPL 147
PP L FP Q S S L SL S G +C G V PL
Sbjct: 778 PPPLAKFPPPSQPQPPPPPPPSPASLLKSLASVLEGQKYCYRGTGAAVSTRPGPLPTTQY 837
Query: 148 SPHPPSAARA 157
SP PPS A A
Sbjct: 838 SPGPPSGATA 847
>gi|32171215 CREB regulated transcription coactivator 2 [Homo
sapiens]
Length = 693
Score = 28.1 bits (61), Expect = 3.4
Identities = 32/116 (27%), Positives = 43/116 (37%), Gaps = 21/116 (18%)
Query: 2 PARLQALPPLQSHAAWIGTTLSHSSPAARLLSPSTPEHCGPPRCTFCRLPRGSSHSRQGH 61
PA + LPP + + + P P P P + L G+S S H
Sbjct: 259 PANVPVLPPAMNTGGSLPDLTNLHFP------PPLPTPLDPEETAYPSLSGGNSTSNLTH 312
Query: 62 ALDHLGAA----LLLSEDARGVH-PLHRLRALWLVSIPPTLQGFPRLMNSQASTTS 112
+ HLG + L DA G+H PL P+LQ N QAS +S
Sbjct: 313 TMTHLGISRGMGLGPGYDAPGLHSPLSH----------PSLQSSLSNPNLQASLSS 358
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,601,443
Number of Sequences: 37866
Number of extensions: 459889
Number of successful extensions: 2202
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 2065
Number of HSP's gapped (non-prelim): 197
length of query: 160
length of database: 18,247,518
effective HSP length: 94
effective length of query: 66
effective length of database: 14,688,114
effective search space: 969415524
effective search space used: 969415524
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.