Search of human proteins with 239746822

Search of human proteins with 239746822

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239746822 PREDICTED: hypothetical protein XP_002343851 [Homo
sapiens]
         (371 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239746822 PREDICTED: hypothetical protein XP_002343851 [Homo ...   752   0.0  
gi|239757803 PREDICTED: hypothetical protein [Homo sapiens]           664   0.0  
gi|239752315 PREDICTED: hypothetical protein XP_002348197 [Homo ...   664   0.0  
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap...    36   0.049
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap...    36   0.049
gi|65288071 tensin 3 [Homo sapiens]                                    33   0.31 
gi|40068065 hypothetical protein LOC54058 [Homo sapiens]               33   0.54 
gi|38202209 methyl-CpG binding domain protein 5 [Homo sapiens]         33   0.54 
gi|91982772 mucin 17 [Homo sapiens]                                    32   0.70 
gi|8923040 CDKN2A interacting protein [Homo sapiens]                   32   0.92 
gi|38569471 MUF1 protein [Homo sapiens]                                32   1.2  
gi|31791053 zinc finger protein 804B [Homo sapiens]                    31   2.0  
gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo s...    30   2.7  
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    30   2.7  
gi|239745938 PREDICTED: hypothetical protein [Homo sapiens]            30   3.5  
gi|167466177 cell division cycle protein 27 isoform 1 [Homo sapi...    30   3.5  
gi|167466175 cell division cycle protein 27 isoform 2 [Homo sapi...    30   3.5  
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]          30   4.5  
gi|95147555 microtubule-associated protein 1A [Homo sapiens]           30   4.5  
gi|116268103 zinc finger, FYVE domain containing 19 [Homo sapiens]     30   4.5  
gi|4557853 transcription factor SOX9 [Homo sapiens]                    29   5.9  
gi|14249342 internexin neuronal intermediate filament protein, a...    29   5.9  
gi|239753758 PREDICTED: hypothetical protein LOC401106 [Homo sap...    29   5.9  
gi|239751791 PREDICTED: hypothetical protein [Homo sapiens]            29   5.9  
gi|169166137 PREDICTED: hypothetical protein LOC401106 [Homo sap...    29   5.9  
gi|239746282 PREDICTED: hypothetical protein XP_002343723 [Homo ...    29   5.9  
gi|169165128 PREDICTED: hypothetical protein LOC401106 [Homo sap...    29   5.9  
gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens]       29   5.9  
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         29   5.9  

>gi|239746822 PREDICTED: hypothetical protein XP_002343851 [Homo
           sapiens]
          Length = 371

 Score =  752 bits (1942), Expect = 0.0
 Identities = 371/371 (100%), Positives = 371/371 (100%)

Query: 1   MSSEGSRASRLTQDRAEMLVTGLPSCTTKRLALVSFPAAAEGGKAKVRVRAVPWEGWRAS 60
           MSSEGSRASRLTQDRAEMLVTGLPSCTTKRLALVSFPAAAEGGKAKVRVRAVPWEGWRAS
Sbjct: 1   MSSEGSRASRLTQDRAEMLVTGLPSCTTKRLALVSFPAAAEGGKAKVRVRAVPWEGWRAS 60

Query: 61  TQMQACCLPTCGHIKEEREDTAMVITRPEQPARGIKGQSKDTACQLAGAPLHFLACGDVH 120
           TQMQACCLPTCGHIKEEREDTAMVITRPEQPARGIKGQSKDTACQLAGAPLHFLACGDVH
Sbjct: 61  TQMQACCLPTCGHIKEEREDTAMVITRPEQPARGIKGQSKDTACQLAGAPLHFLACGDVH 120

Query: 121 DMHVVLGVPHLSPHYTPGHTRLSNVLPLLSDQSTLESDTVGPLTDQTRLSLIILLLRGWK 180
           DMHVVLGVPHLSPHYTPGHTRLSNVLPLLSDQSTLESDTVGPLTDQTRLSLIILLLRGWK
Sbjct: 121 DMHVVLGVPHLSPHYTPGHTRLSNVLPLLSDQSTLESDTVGPLTDQTRLSLIILLLRGWK 180

Query: 181 VQQSSSALSGSGISRMQRPSSEAQMRMVASSEVDTRMSLERDQAKSETPRVWPRSTRSTV 240
           VQQSSSALSGSGISRMQRPSSEAQMRMVASSEVDTRMSLERDQAKSETPRVWPRSTRSTV
Sbjct: 181 VQQSSSALSGSGISRMQRPSSEAQMRMVASSEVDTRMSLERDQAKSETPRVWPRSTRSTV 240

Query: 241 GGAGTSWHREMLPSRPEDHPQTHLHAVKSSAATADDAVAIGTSTAWLGEGPVALAQQLPP 300
           GGAGTSWHREMLPSRPEDHPQTHLHAVKSSAATADDAVAIGTSTAWLGEGPVALAQQLPP
Sbjct: 241 GGAGTSWHREMLPSRPEDHPQTHLHAVKSSAATADDAVAIGTSTAWLGEGPVALAQQLPP 300

Query: 301 KPQVLPTQRWGVPSLGILPQQLAAPADILRPKLWKRWCAVRVVPAGSGCRAGSRHRTEGI 360
           KPQVLPTQRWGVPSLGILPQQLAAPADILRPKLWKRWCAVRVVPAGSGCRAGSRHRTEGI
Sbjct: 301 KPQVLPTQRWGVPSLGILPQQLAAPADILRPKLWKRWCAVRVVPAGSGCRAGSRHRTEGI 360

Query: 361 NQLGGGGTAGE 371
           NQLGGGGTAGE
Sbjct: 361 NQLGGGGTAGE 371


>gi|239757803 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 367

 Score =  664 bits (1713), Expect = 0.0
 Identities = 337/375 (89%), Positives = 341/375 (90%), Gaps = 12/375 (3%)

Query: 1   MSSEGSRASRLTQDRAEMLVTGLPSCTTKRLALVSFPAAAEGGKAKVRVRAVPWEGWRAS 60
           MSSEGSRASRLTQDRAEMLVTGLPSCTTKRLALVSFPAAAEGGKAKVRVRAVPWEGWRAS
Sbjct: 1   MSSEGSRASRLTQDRAEMLVTGLPSCTTKRLALVSFPAAAEGGKAKVRVRAVPWEGWRAS 60

Query: 61  TQMQACCLPTCGHIKEEREDTAMVITRPEQPARGIKGQSKDTACQLAGAPLHFLACGDVH 120
           TQMQACCLPTCGHIKEEREDTA VITRPEQPARGIKGQSKDTACQLAGAPLHFLACGDVH
Sbjct: 61  TQMQACCLPTCGHIKEEREDTATVITRPEQPARGIKGQSKDTACQLAGAPLHFLACGDVH 120

Query: 121 DMHVVLGVPHLSPHYTPGHTRLSNVLPLLSDQSTLESDTVGPLTDQTRLSLIILL----L 176
           DMHVVLGVPHL    T  H          S Q+ LESD  G   D T  SL+  +    +
Sbjct: 121 DMHVVLGVPHLWGECTDHHPA--------SSQALLESDHSGAAVDATGWSLLESIHNRAV 172

Query: 177 RGWKVQQSSSALSGSGISRMQRPSSEAQMRMVASSEVDTRMSLERDQAKSETPRVWPRST 236
            GWKVQQSSSALSGSGISRMQRPSSEAQMRMVASSEVDTRMSLERDQAKSETPRVWPRST
Sbjct: 173 AGWKVQQSSSALSGSGISRMQRPSSEAQMRMVASSEVDTRMSLERDQAKSETPRVWPRST 232

Query: 237 RSTVGGAGTSWHREMLPSRPEDHPQTHLHAVKSSAATADDAVAIGTSTAWLGEGPVALAQ 296
           RSTVGGAGTSWHREMLPSRPEDHPQTHLHAVKSSAATADDAVAIGTSTAWLGEGPVALAQ
Sbjct: 233 RSTVGGAGTSWHREMLPSRPEDHPQTHLHAVKSSAATADDAVAIGTSTAWLGEGPVALAQ 292

Query: 297 QLPPKPQVLPTQRWGVPSLGILPQQLAAPADILRPKLWKRWCAVRVVPAGSGCRAGSRHR 356
           QLPPKPQVLPTQRWGVPSLGILPQQLAAPADILRPKLWKRWCAVRVVPAGSGCRAGSRHR
Sbjct: 293 QLPPKPQVLPTQRWGVPSLGILPQQLAAPADILRPKLWKRWCAVRVVPAGSGCRAGSRHR 352

Query: 357 TEGINQLGGGGTAGE 371
           TEGINQLGGGGTAGE
Sbjct: 353 TEGINQLGGGGTAGE 367


>gi|239752315 PREDICTED: hypothetical protein XP_002348197 [Homo
           sapiens]
          Length = 367

 Score =  664 bits (1713), Expect = 0.0
 Identities = 337/375 (89%), Positives = 341/375 (90%), Gaps = 12/375 (3%)

Query: 1   MSSEGSRASRLTQDRAEMLVTGLPSCTTKRLALVSFPAAAEGGKAKVRVRAVPWEGWRAS 60
           MSSEGSRASRLTQDRAEMLVTGLPSCTTKRLALVSFPAAAEGGKAKVRVRAVPWEGWRAS
Sbjct: 1   MSSEGSRASRLTQDRAEMLVTGLPSCTTKRLALVSFPAAAEGGKAKVRVRAVPWEGWRAS 60

Query: 61  TQMQACCLPTCGHIKEEREDTAMVITRPEQPARGIKGQSKDTACQLAGAPLHFLACGDVH 120
           TQMQACCLPTCGHIKEEREDTA VITRPEQPARGIKGQSKDTACQLAGAPLHFLACGDVH
Sbjct: 61  TQMQACCLPTCGHIKEEREDTATVITRPEQPARGIKGQSKDTACQLAGAPLHFLACGDVH 120

Query: 121 DMHVVLGVPHLSPHYTPGHTRLSNVLPLLSDQSTLESDTVGPLTDQTRLSLIILL----L 176
           DMHVVLGVPHL    T  H          S Q+ LESD  G   D T  SL+  +    +
Sbjct: 121 DMHVVLGVPHLWGECTDHHPA--------SSQALLESDHSGAAVDATGWSLLESIHNRAV 172

Query: 177 RGWKVQQSSSALSGSGISRMQRPSSEAQMRMVASSEVDTRMSLERDQAKSETPRVWPRST 236
            GWKVQQSSSALSGSGISRMQRPSSEAQMRMVASSEVDTRMSLERDQAKSETPRVWPRST
Sbjct: 173 AGWKVQQSSSALSGSGISRMQRPSSEAQMRMVASSEVDTRMSLERDQAKSETPRVWPRST 232

Query: 237 RSTVGGAGTSWHREMLPSRPEDHPQTHLHAVKSSAATADDAVAIGTSTAWLGEGPVALAQ 296
           RSTVGGAGTSWHREMLPSRPEDHPQTHLHAVKSSAATADDAVAIGTSTAWLGEGPVALAQ
Sbjct: 233 RSTVGGAGTSWHREMLPSRPEDHPQTHLHAVKSSAATADDAVAIGTSTAWLGEGPVALAQ 292

Query: 297 QLPPKPQVLPTQRWGVPSLGILPQQLAAPADILRPKLWKRWCAVRVVPAGSGCRAGSRHR 356
           QLPPKPQVLPTQRWGVPSLGILPQQLAAPADILRPKLWKRWCAVRVVPAGSGCRAGSRHR
Sbjct: 293 QLPPKPQVLPTQRWGVPSLGILPQQLAAPADILRPKLWKRWCAVRVVPAGSGCRAGSRHR 352

Query: 357 TEGINQLGGGGTAGE 371
           TEGINQLGGGGTAGE
Sbjct: 353 TEGINQLGGGGTAGE 367


>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sapiens]
          Length = 2462

 Score = 36.2 bits (82), Expect = 0.049
 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 10/113 (8%)

Query: 162  PLTDQTRLSLIILLLRGWKVQQSSSALSGSGISRMQRPSSEAQMRMVASSEVDTRMSLER 221
            P T   RL+ +    + +  + SSS LS  G + + +P++ +        + D     +R
Sbjct: 1742 PATAMDRLAYLPTAPQPFSSRHSSSPLSPGGPTHLTKPTTTSSSER--ERDRDRERDRDR 1799

Query: 222  DQAKS--------ETPRVWPRSTRSTVGGAGTSWHREMLPSRPEDHPQTHLHA 266
            ++ KS        E   +W   T  + G +G+S       SRP  H   H H+
Sbjct: 1800 EREKSILTSTTTVEHAPIWRPGTEQSSGSSGSSGGGGGSSSRPASHSHAHQHS 1852


>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sapiens]
          Length = 2524

 Score = 36.2 bits (82), Expect = 0.049
 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 10/113 (8%)

Query: 162  PLTDQTRLSLIILLLRGWKVQQSSSALSGSGISRMQRPSSEAQMRMVASSEVDTRMSLER 221
            P T   RL+ +    + +  + SSS LS  G + + +P++ +        + D     +R
Sbjct: 1758 PATAMDRLAYLPTAPQPFSSRHSSSPLSPGGPTHLTKPTTTSSSER--ERDRDRERDRDR 1815

Query: 222  DQAKS--------ETPRVWPRSTRSTVGGAGTSWHREMLPSRPEDHPQTHLHA 266
            ++ KS        E   +W   T  + G +G+S       SRP  H   H H+
Sbjct: 1816 EREKSILTSTTTVEHAPIWRPGTEQSSGSSGSSGGGGGSSSRPASHSHAHQHS 1868


>gi|65288071 tensin 3 [Homo sapiens]
          Length = 1445

 Score = 33.5 bits (75), Expect = 0.31
 Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 9/118 (7%)

Query: 184  SSSALSGSGISRMQRPSSEAQMRMVASSEVDTRMSLERDQAKSETPRVWPRSTRSTVGGA 243
            SS  +S +G  + +  SS A+ + V SS       L   +         P  +  +   +
Sbjct: 926  SSCTISSNGPGQRRESSSSAERQWVESSPKPMVSLLGSGR---------PTGSPLSAEFS 976

Query: 244  GTSWHREMLPSRPEDHPQTHLHAVKSSAATADDAVAIGTSTAWLGEGPVALAQQLPPK 301
            GT     +L   P    Q   H+ + S A   D++A  +S A+LG G   +   LPP+
Sbjct: 977  GTRKDSPVLSCFPPSELQAPFHSHELSLAEPPDSLAPPSSQAFLGFGTAPVGSGLPPE 1034


>gi|40068065 hypothetical protein LOC54058 [Homo sapiens]
          Length = 322

 Score = 32.7 bits (73), Expect = 0.54
 Identities = 42/179 (23%), Positives = 65/179 (36%), Gaps = 27/179 (15%)

Query: 147 PLLSDQSTLESDTVGPLTDQTRLSLIILLLRGWKVQQSSSALSGSGISRMQRPSSEAQ-- 204
           P L  QS+  + T+   +   +++ + L L G K++Q    + G        P +E +  
Sbjct: 71  PPLPLQSSPAAPTMLDSSAAEQVTRLTLKLLGQKLEQERQNVEGGPEGLHLEPGNEDRPD 130

Query: 205 --MRMVASSEVDTRMSLERDQAKSETPRV--WPRSTRSTVGGAGTSWHREMLPSRPEDHP 260
             ++       D    L       E  R   W   +R  +G A            P + P
Sbjct: 131 DALQTALKRRRDLLQRLREQHLLDELSRAQAWSGPSRGALGSA-----------LPPELP 179

Query: 261 QTHLHAVKSSAATADDAVAIGTSTAWLGEGPVALAQQLP--------PKPQVLPTQRWG 311
            T +    S +  A D   I   T  + + P  + QQLP        P PQ  PTQR G
Sbjct: 180 PTGILPTASPSPLAPDPPRIILPT--VPQPPATIIQQLPQQPLIAQIPPPQAFPTQRSG 236


>gi|38202209 methyl-CpG binding domain protein 5 [Homo sapiens]
          Length = 1494

 Score = 32.7 bits (73), Expect = 0.54
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 188 LSGSGISRMQRPSSEAQMRMVASSEVDTRMSLERDQAKSETPRVWPRSTRSTVGGAGTSW 247
           + G+GI R++     ++    +S   +  M     QA S   +V PRS RST+G      
Sbjct: 445 MMGTGIGRIEASPQRSRSSSTSSDHGNFMMPPVGPQATSSGIKVPPRSPRSTIGSP---- 500

Query: 248 HREMLPSRPEDHPQTH 263
            R  +PS P      H
Sbjct: 501 -RPSMPSSPSTKSDGH 515


>gi|91982772 mucin 17 [Homo sapiens]
          Length = 4493

 Score = 32.3 bits (72), Expect = 0.70
 Identities = 42/172 (24%), Positives = 64/172 (37%), Gaps = 14/172 (8%)

Query: 140  TRLSNVLPLLSDQSTLES---DTVGPLTDQTRLSLIILLLRGWKVQQSSSALSGSGISRM 196
            T +S+ L   S+ STL +   D+  PLT  T  S       G  +  S+ +   + ++RM
Sbjct: 988  TPVSHTLVANSEASTLSTTPVDSNTPLTTSTEASSPPPTAEGTSMPTSTPSEGSTPLTRM 1047

Query: 197  QRPSSEAQMRMVASSEVDTRMSLERDQAKSETPRVWPRSTRSTVGGAGTSWHREMLPSRP 256
               ++     MVASSE  T  +   D +   T      S+ +T  G           S P
Sbjct: 1048 PVSTT-----MVASSETSTLSTTPADTSTPVTTYSQASSSSTTADGTSMPTSTYSEGSTP 1102

Query: 257  EDHPQTHLHAVKSSAAT------ADDAVAIGTSTAWLGEGPVALAQQLPPKP 302
                      V SS A+       D ++ + TST        A    +P  P
Sbjct: 1103 LTSVPVSTRLVVSSEASTLSTTPVDTSIPVTTSTEASSSPTTAEGTSIPTSP 1154


>gi|8923040 CDKN2A interacting protein [Homo sapiens]
          Length = 580

 Score = 32.0 bits (71), Expect = 0.92
 Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 17/107 (15%)

Query: 188 LSGSGISRMQ------RPSSEAQ---MRMVASSEVDTRMSLERDQAKSETPRVWPRSTRS 238
           L  SG S ++      +PSSE     +    SSE     S+ ++ + S T  + P+S+ S
Sbjct: 293 LGSSGSSEVELPLLSSKPSSETASSGLTSKTSSEASVSSSVAKNSSSSGTSLLTPKSSSS 352

Query: 239 TVGGAGTSWHREMLPSRPEDHPQTHLHAVKSSAATADDAVAIGTSTA 285
           T        +  +L S+        L A KSS+ T+   V+  TS A
Sbjct: 353 T--------NTSLLTSKSTSQVAASLLASKSSSQTSGSLVSKSTSLA 391


>gi|38569471 MUF1 protein [Homo sapiens]
          Length = 812

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 7/114 (6%)

Query: 190 GSGISRMQRPSSEAQMRMVASSEVDTRMSLERDQAKSE-TPRVWPRSTRSTVGGAGTSWH 248
           GS +   +RP  +A  R  A+     R S  +   ++    RV  RST+ ++   GT   
Sbjct: 280 GSLLLGSRRPRRDAAERCAAALMASRRKSEAKQMPRAAPATRVTRRSTQESLTAGGTDLK 339

Query: 249 REMLPSRPEDHPQTHLHAVKSSAATADDAVAIGTSTAWLGEGPVALAQQLPPKP 302
           RE+ P            +  + AAT+    +  +ST+     P + A Q  PKP
Sbjct: 340 RELHPPATSHEAPGTKRSPSAPAATS----SASSSTSSYKRAPASSAPQ--PKP 387


>gi|31791053 zinc finger protein 804B [Homo sapiens]
          Length = 1349

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 8/52 (15%)

Query: 106  LAGAPLHFLACGDVHDMHVVLG-------VPHL-SPHYTPGHTRLSNVLPLL 149
            LAG PLH +A    H  H+ L        +P L  PH  P  T + ++ PL+
Sbjct: 1263 LAGHPLHLVAATPFHPSHITLQPLPPTAFIPTLFGPHLNPATTSIIHLNPLI 1314


>gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo
           sapiens]
          Length = 614

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 18/47 (38%), Positives = 22/47 (46%)

Query: 66  CCLPTCGHIKEEREDTAMVITRPEQPARGIKGQSKDTACQLAGAPLH 112
           CC P    +  +    A    R ++PA  I GQ   TA  LA APLH
Sbjct: 496 CCTPGRPLLPCKCSSAAHSTYRVQEPAVHIPGQEPLTASMLAAAPLH 542


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 33/116 (28%), Positives = 44/116 (37%), Gaps = 7/116 (6%)

Query: 243 AGTSWHREMLPSRPEDHPQTHLHAVKSSAATADDAVAIGTSTAWLGEGPVALAQQLPPKP 302
           A  + H  + P  PE        A+ +   +   A A G   A   EG    A + PP  
Sbjct: 35  ASAAHHHHLAPRTPEVRAAA-AGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAG 93

Query: 303 QVLP----TQRWGVPS--LGILPQQLAAPADILRPKLWKRWCAVRVVPAGSGCRAG 352
           +  P     QR G PS    ++P   A PA  LRP       +   VPA +   AG
Sbjct: 94  RARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAG 149


>gi|239745938 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 336

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 27/87 (31%), Positives = 30/87 (34%), Gaps = 4/87 (4%)

Query: 288 GEGPVALAQQLPPKPQVLPTQRWGVPSLGILPQQLAAPADILRPKLWK----RWCAVRVV 343
           G G VA A    P    LP  RW +     LP   AAP        W+    R       
Sbjct: 146 GPGQVAAAAAAAPASSPLPPGRWCLGDQRRLPPATAAPPWASSATAWRLPQPRRRRRPTC 205

Query: 344 PAGSGCRAGSRHRTEGINQLGGGGTAG 370
           P  S CR  S      +   GGG  AG
Sbjct: 206 PCCSRCRELSPPMGPDLGGGGGGAGAG 232


>gi|167466177 cell division cycle protein 27 isoform 1 [Homo
           sapiens]
          Length = 830

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 7/65 (10%)

Query: 270 SAATADDAVAIGTSTAWLGEGPVALAQQLPPKPQVLPTQRWG-------VPSLGILPQQL 322
           S+ +  D+  I   T  LG G   L++Q+  KP+   +   G        PS GILP + 
Sbjct: 230 SSVSYIDSAVISPDTVPLGTGTSILSKQVQNKPKTGRSLLGGPAALSPLTPSFGILPLET 289

Query: 323 AAPAD 327
            +P D
Sbjct: 290 PSPGD 294


>gi|167466175 cell division cycle protein 27 isoform 2 [Homo
           sapiens]
          Length = 824

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 7/65 (10%)

Query: 270 SAATADDAVAIGTSTAWLGEGPVALAQQLPPKPQVLPTQRWG-------VPSLGILPQQL 322
           S+ +  D+  I   T  LG G   L++Q+  KP+   +   G        PS GILP + 
Sbjct: 230 SSVSYIDSAVISPDTVPLGTGTSILSKQVQNKPKTGRSLLGGPAALSPLTPSFGILPLET 289

Query: 323 AAPAD 327
            +P D
Sbjct: 290 PSPGD 294


>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
          Length = 715

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 182 QQSSSALSGSGISRMQRPSSEAQMRMVASSEVDTRMSLERDQAKSETPRVWPRSTRSTVG 241
           +QS S        R + PS E + R   SS      S ERD ++S +P      +R    
Sbjct: 558 RQSRSPSKERDRRRWRSPSKERERRQSRSS------SEERDHSRSRSPNKQSGYSRPRAS 611

Query: 242 GAGTSWHREMLPSRPEDHPQTHLHAVKS 269
               +  R   PS+  +H Q+   + +S
Sbjct: 612 SKEKAHSRSRTPSKEGNHSQSRTSSKES 639


>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
          Length = 2803

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 9/107 (8%)

Query: 212 EVDTRMSLERDQAKSETPRVWPRSTRSTVGGAGTSWHREMLPSRPEDHPQTHLHAVKSSA 271
           ++D   ++  ++  S  P+  P + + TV     S HRE++ S PED  Q      +   
Sbjct: 485 KIDRSRAIRGEKELSSEPQT-PPAQKGTVPLPTISGHRELVLSSPEDLTQDFEEMKREER 543

Query: 272 ATADDAVAIGTSTAWLGEGPVAL--AQQLPPKPQVLPTQRWGVPSLG 316
           A   +    G     LG+ P  L  A++ PP   +  T    VP LG
Sbjct: 544 ALLAEQRDTG-----LGDKPFPLDTAEEGPPSTAIQGTPP-SVPGLG 584


>gi|116268103 zinc finger, FYVE domain containing 19 [Homo sapiens]
          Length = 471

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 11/107 (10%)

Query: 195 RMQRPSSEAQMRMVAS-SEVDTRMSLERDQAKSETPRVWPRSTRSTVGGAGTSWHREMLP 253
           R+ R   E + ++V S +E++ R++  +D+ +   P       R        +    +LP
Sbjct: 180 RLARLRQENKPKLVPSQAEIEARLAALKDERQGSIPSTQEMEARLA------ALQGRVLP 233

Query: 254 SR---PEDH-PQTHLHAVKSSAATADDAVAIGTSTAWLGEGPVALAQ 296
           S+   P  H P T   A ++       A  +    +W G GP A  Q
Sbjct: 234 SQTPQPAHHTPDTRTQAQQTQDLLTQLAAEVAIDESWKGGGPAASLQ 280


>gi|4557853 transcription factor SOX9 [Homo sapiens]
          Length = 509

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 26/76 (34%), Positives = 30/76 (39%), Gaps = 9/76 (11%)

Query: 253 PSRPEDHPQ---THLHAVKSSAATADDAVAIGTSTAWLGEGPVALAQQLPPKPQVLPTQR 309
           P  P  H Q   T  + + S+AAT   A  +  S       P     Q PP PQ  P Q 
Sbjct: 304 PGVPATHGQVTYTGSYGISSTAATPASAGHVWMSKQQAPPPPPQQPPQAPPAPQA-PPQP 362

Query: 310 WGVPSLGILPQQLAAP 325
              P     PQQ AAP
Sbjct: 363 QAAP-----PQQPAAP 373


>gi|14249342 internexin neuronal intermediate filament protein,
           alpha [Homo sapiens]
          Length = 499

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 175 LLRGWKVQQSSSALSGSGISRMQRPSSEAQMRMVA---SSEVDTRMSLERDQAKSETPRV 231
           LL G + + S+S LS SG++ +  PS     R+++   S    T +SL++++ + E  +V
Sbjct: 399 LLEGEETRFSTSGLSISGLNPLPNPSYLLPPRILSATTSKVSSTGLSLKKEEEEEEASKV 458

Query: 232 WPRST 236
             + T
Sbjct: 459 ASKKT 463


>gi|239753758 PREDICTED: hypothetical protein LOC401106 [Homo
           sapiens]
          Length = 297

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 28/82 (34%), Positives = 32/82 (39%), Gaps = 3/82 (3%)

Query: 290 GPVALAQQLPPKPQVLPTQRWGVPSLGILPQQLAAPADI-LRPKLWKRWCAVRVVPAGSG 348
           GP A  +Q    PQ      W  P+L         P D  LRP+   R  A R V     
Sbjct: 55  GPHARPRQAARPPQAFAPTAWA-PALASPAPDTPRPRDAQLRPEKAGRDLA-RDVENPPP 112

Query: 349 CRAGSRHRTEGINQLGGGGTAG 370
            R G+R R     Q GGG  AG
Sbjct: 113 LRGGARSRCGESRQAGGGARAG 134


>gi|239751791 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 650

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 7/86 (8%)

Query: 189 SGSGISRMQRPSSEAQMRMVASSEVDTRMSLERDQAKSETPRVWPRSTRSTVGGAGTSWH 248
           +G+  S  +R S   +++   + + DTR+      A+   PR  P S+R   G AG    
Sbjct: 165 AGAASSLSERSSERVELQS-DTDDSDTRV------AEGARPRPGPTSSRRPWGRAGGLRP 217

Query: 249 REMLPSRPEDHPQTHLHAVKSSAATA 274
           R   P+R +  P +       SAA A
Sbjct: 218 RGKRPARGKKRPSSQRRCSSPSAARA 243


>gi|169166137 PREDICTED: hypothetical protein LOC401106 [Homo
           sapiens]
          Length = 297

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 28/82 (34%), Positives = 32/82 (39%), Gaps = 3/82 (3%)

Query: 290 GPVALAQQLPPKPQVLPTQRWGVPSLGILPQQLAAPADI-LRPKLWKRWCAVRVVPAGSG 348
           GP A  +Q    PQ      W  P+L         P D  LRP+   R  A R V     
Sbjct: 55  GPHARPRQAARPPQAFAPTAWA-PALASPAPDTPRPRDAQLRPEKAGRDLA-RDVENPPP 112

Query: 349 CRAGSRHRTEGINQLGGGGTAG 370
            R G+R R     Q GGG  AG
Sbjct: 113 LRGGARSRCGESRQAGGGARAG 134


>gi|239746282 PREDICTED: hypothetical protein XP_002343723 [Homo
           sapiens]
          Length = 725

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 7/86 (8%)

Query: 189 SGSGISRMQRPSSEAQMRMVASSEVDTRMSLERDQAKSETPRVWPRSTRSTVGGAGTSWH 248
           +G+  S  +R S   +++   + + DTR+      A+   PR  P S+R   G AG    
Sbjct: 165 AGAASSLSERSSERVELQS-DTDDSDTRV------AEGARPRPGPTSSRRPWGRAGGLRP 217

Query: 249 REMLPSRPEDHPQTHLHAVKSSAATA 274
           R   P+R +  P +       SAA A
Sbjct: 218 RGKRPARGKKRPSSQRRCSSPSAARA 243


>gi|169165128 PREDICTED: hypothetical protein LOC401106 [Homo
           sapiens]
          Length = 297

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 28/82 (34%), Positives = 32/82 (39%), Gaps = 3/82 (3%)

Query: 290 GPVALAQQLPPKPQVLPTQRWGVPSLGILPQQLAAPADI-LRPKLWKRWCAVRVVPAGSG 348
           GP A  +Q    PQ      W  P+L         P D  LRP+   R  A R V     
Sbjct: 55  GPHARPRQAARPPQAFAPTAWA-PALASPAPDTPRPRDAQLRPEKAGRDLA-RDVENPPP 112

Query: 349 CRAGSRHRTEGINQLGGGGTAG 370
            R G+R R     Q GGG  AG
Sbjct: 113 LRGGARSRCGESRQAGGGARAG 134


>gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens]
          Length = 2217

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 256 PEDHPQTHLHAVKSSAATADDAVAIGTSTAWLGEGPVALAQQ-LPPKPQVLPTQRWGVPS 314
           P D P +  H V++  AT          T  L   PV   Q  LPP+P VLP Q    P 
Sbjct: 921 PTDVPPSPHHTVQNMRATPPQPALPPQPT--LPPQPVLPPQPTLPPQP-VLPPQPTRPPQ 977

Query: 315 LGILPQQLAAPADILRPK 332
             + PQ +  P  +L P+
Sbjct: 978 PVLPPQPMLPPQPVLPPQ 995


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 6/116 (5%)

Query: 184 SSSALSGSGISRMQRPSSEAQMRMVASSEVDTRMSLERDQAKSETPRVW-PRSTRSTVGG 242
           SS ++SGS     ++P +        S   +   ++   +AKS TP    PR++    GG
Sbjct: 749 SSRSVSGSPEPAAKKPPAPPSPVQSQSPSTNWSPAVPVKKAKSPTPSPSPPRNSDQEGGG 808

Query: 243 AGTSWHREMLPSRPEDHPQTHLH----AVKSSAATADDAVAIGTSTAWLG-EGPVA 293
                 ++    + + H +   H    AV ++AA A    AI  +T  L  E PVA
Sbjct: 809 KKKKKKKDKKHKKDKKHKKHKKHKKEKAVAAAAAAAVTPAAIAAATTTLAQEEPVA 864


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.129    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,302,299
Number of Sequences: 37866
Number of extensions: 742400
Number of successful extensions: 2310
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 2289
Number of HSP's gapped (non-prelim): 39
length of query: 371
length of database: 18,247,518
effective HSP length: 104
effective length of query: 267
effective length of database: 14,309,454
effective search space: 3820624218
effective search space used: 3820624218
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.