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Search of human proteins with 239746733
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746733 PREDICTED: hypothetical protein [Homo sapiens]
(130 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239746733 PREDICTED: hypothetical protein [Homo sapiens] 271 8e-74
gi|239757723 PREDICTED: hypothetical protein [Homo sapiens] 265 6e-72
gi|239752210 PREDICTED: hypothetical protein [Homo sapiens] 265 6e-72
gi|169212153 PREDICTED: hypothetical protein [Homo sapiens] 70 4e-13
gi|169211716 PREDICTED: hypothetical protein [Homo sapiens] 70 4e-13
gi|169211169 PREDICTED: hypothetical protein [Homo sapiens] 70 4e-13
gi|169194706 PREDICTED: hypothetical protein [Homo sapiens] 45 2e-05
gi|169201915 PREDICTED: hypothetical protein [Homo sapiens] 45 2e-05
gi|169191953 PREDICTED: hypothetical protein [Homo sapiens] 45 2e-05
gi|169208422 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14
gi|239745055 PREDICTED: hypothetical protein XP_002343352 [Homo ... 32 0.14
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 31 0.32
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 30 0.41
gi|169162130 PREDICTED: tetratricopeptide repeat domain 34 [Homo... 30 0.41
gi|217330639 phosphoinositide-3-kinase, regulatory subunit 5 [Ho... 30 0.54
gi|217330622 phosphoinositide-3-kinase, regulatory subunit 5 [Ho... 30 0.54
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 30 0.54
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 30 0.54
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 30 0.54
gi|50428933 C1q domain containing 1 isoform 1 [Homo sapiens] 30 0.54
gi|50428931 C1q domain containing 1 isoform 3 [Homo sapiens] 30 0.54
gi|23503235 C1q domain containing 1 isoform 2 [Homo sapiens] 30 0.54
gi|4758316 ets variant gene 5 (ets-related molecule) [Homo sapiens] 30 0.71
gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens] 29 1.2
gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens] 29 1.2
gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens] 29 1.2
gi|157502184 kinesin family member 6 [Homo sapiens] 29 1.2
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 29 1.2
gi|239756916 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|239751407 PREDICTED: hypothetical protein XP_002347839 [Homo ... 28 1.6
>gi|239746733 PREDICTED: hypothetical protein [Homo sapiens]
Length = 130
Score = 271 bits (694), Expect = 8e-74
Identities = 130/130 (100%), Positives = 130/130 (100%)
Query: 1 MMAAAGHLEQLLPSRWLQQLGMARAACSMEKAKARDKRETRPFQVGVRASWMLLQPPKPW 60
MMAAAGHLEQLLPSRWLQQLGMARAACSMEKAKARDKRETRPFQVGVRASWMLLQPPKPW
Sbjct: 1 MMAAAGHLEQLLPSRWLQQLGMARAACSMEKAKARDKRETRPFQVGVRASWMLLQPPKPW 60
Query: 61 LQTQASLCSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQTEGP 120
LQTQASLCSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQTEGP
Sbjct: 61 LQTQASLCSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQTEGP 120
Query: 121 AEVMTEECGL 130
AEVMTEECGL
Sbjct: 121 AEVMTEECGL 130
>gi|239757723 PREDICTED: hypothetical protein [Homo sapiens]
Length = 130
Score = 265 bits (678), Expect = 6e-72
Identities = 128/130 (98%), Positives = 128/130 (98%)
Query: 1 MMAAAGHLEQLLPSRWLQQLGMARAACSMEKAKARDKRETRPFQVGVRASWMLLQPPKPW 60
MMAAAGHLEQLLPSRWLQQLGMARAACSMEKAKARDKRETRPFQVGVRASWMLLQ PKPW
Sbjct: 1 MMAAAGHLEQLLPSRWLQQLGMARAACSMEKAKARDKRETRPFQVGVRASWMLLQLPKPW 60
Query: 61 LQTQASLCSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQTEGP 120
LQTQASLCSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQ EGP
Sbjct: 61 LQTQASLCSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQKEGP 120
Query: 121 AEVMTEECGL 130
AEVMTEECGL
Sbjct: 121 AEVMTEECGL 130
>gi|239752210 PREDICTED: hypothetical protein [Homo sapiens]
Length = 130
Score = 265 bits (678), Expect = 6e-72
Identities = 128/130 (98%), Positives = 128/130 (98%)
Query: 1 MMAAAGHLEQLLPSRWLQQLGMARAACSMEKAKARDKRETRPFQVGVRASWMLLQPPKPW 60
MMAAAGHLEQLLPSRWLQQLGMARAACSMEKAKARDKRETRPFQVGVRASWMLLQ PKPW
Sbjct: 1 MMAAAGHLEQLLPSRWLQQLGMARAACSMEKAKARDKRETRPFQVGVRASWMLLQLPKPW 60
Query: 61 LQTQASLCSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQTEGP 120
LQTQASLCSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQ EGP
Sbjct: 61 LQTQASLCSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQKEGP 120
Query: 121 AEVMTEECGL 130
AEVMTEECGL
Sbjct: 121 AEVMTEECGL 130
>gi|169212153 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 70.5 bits (171), Expect = 4e-13
Identities = 44/86 (51%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 23 ARAACSMEKAKARDKRETRPFQVGVRASWML-LQPPKPWLQTQASLCSQGPEGQVGAPPS 81
A+AA SME A DK E PFQV + LQ PK L+ + S C+ G + + GAPPS
Sbjct: 106 AKAAHSMEPVAAGDKWEPSPFQVARAGTPQAQLQLPKEGLRPRHS-CALGSQEKAGAPPS 164
Query: 82 QAQLQLPKPWLQTQASLHSWGPRKAP 107
QAQL+ KP LQTQA LHSWG + P
Sbjct: 165 QAQLEPFKPQLQTQAPLHSWGLGRPP 190
>gi|169211716 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 70.5 bits (171), Expect = 4e-13
Identities = 44/86 (51%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 23 ARAACSMEKAKARDKRETRPFQVGVRASWML-LQPPKPWLQTQASLCSQGPEGQVGAPPS 81
A+AA SME A DK E PFQV + LQ PK L+ + S C+ G + + GAPPS
Sbjct: 106 AKAAHSMEPVAAGDKWEPSPFQVARAGTPQAQLQLPKEGLRPRHS-CALGSQEKAGAPPS 164
Query: 82 QAQLQLPKPWLQTQASLHSWGPRKAP 107
QAQL+ KP LQTQA LHSWG + P
Sbjct: 165 QAQLEPFKPQLQTQAPLHSWGLGRPP 190
>gi|169211169 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 70.5 bits (171), Expect = 4e-13
Identities = 44/86 (51%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 23 ARAACSMEKAKARDKRETRPFQVGVRASWML-LQPPKPWLQTQASLCSQGPEGQVGAPPS 81
A+AA SME A DK E PFQV + LQ PK L+ + S C+ G + + GAPPS
Sbjct: 106 AKAAHSMEPVAAGDKWEPSPFQVARAGTPQAQLQLPKEGLRPRHS-CALGSQEKAGAPPS 164
Query: 82 QAQLQLPKPWLQTQASLHSWGPRKAP 107
QAQL+ KP LQTQA LHSWG + P
Sbjct: 165 QAQLEPFKPQLQTQAPLHSWGLGRPP 190
>gi|169194706 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 45.1 bits (105), Expect = 2e-05
Identities = 37/95 (38%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 29 MEKAKARDKRETRPFQVGVRASWMLLQPPKPWLQ--TQASLCSQGPEGQVGAPPSQAQLQ 86
ME A DK E PFQV ++ P TQA LCS AP
Sbjct: 1 MEPVGAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITV 60
Query: 87 LPKPWLQTQASLHSWGPRKAPLVAGSQGPQTEGPA 121
WLQ QASLHS G RKAP +Q E PA
Sbjct: 61 ATLLWLQIQASLHSQGSRKAPFPPRAQ----EAPA 91
>gi|169201915 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 45.1 bits (105), Expect = 2e-05
Identities = 37/95 (38%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 29 MEKAKARDKRETRPFQVGVRASWMLLQPPKPWLQ--TQASLCSQGPEGQVGAPPSQAQLQ 86
ME A DK E PFQV ++ P TQA LCS AP
Sbjct: 1 MEPVGAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITV 60
Query: 87 LPKPWLQTQASLHSWGPRKAPLVAGSQGPQTEGPA 121
WLQ QASLHS G RKAP +Q E PA
Sbjct: 61 ATLLWLQIQASLHSQGSRKAPFPPRAQ----EAPA 91
>gi|169191953 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 45.1 bits (105), Expect = 2e-05
Identities = 37/95 (38%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 29 MEKAKARDKRETRPFQVGVRASWMLLQPPKPWLQ--TQASLCSQGPEGQVGAPPSQAQLQ 86
ME A DK E PFQV ++ P TQA LCS AP
Sbjct: 1 MEPVGAGDKHEPCPFQVDGVGAYQAQLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGITV 60
Query: 87 LPKPWLQTQASLHSWGPRKAPLVAGSQGPQTEGPA 121
WLQ QASLHS G RKAP +Q E PA
Sbjct: 61 ATLLWLQIQASLHSQGSRKAPFPPRAQ----EAPA 91
>gi|169208422 PREDICTED: hypothetical protein [Homo sapiens]
Length = 100
Score = 32.0 bits (71), Expect = 0.14
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
Query: 55 QPPKPWLQTQASLCSQG--PEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGS 112
Q P+ W S+ + G EGQ G P Q LP PW Q S PRK + GS
Sbjct: 39 QSPETW-----SVAASGHPAEGQAGGP----QWWLPGPWTQGATGFASPLPRKHRRLWGS 89
Query: 113 QGP 115
GP
Sbjct: 90 GGP 92
>gi|239745055 PREDICTED: hypothetical protein XP_002343352 [Homo
sapiens]
Length = 100
Score = 32.0 bits (71), Expect = 0.14
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
Query: 55 QPPKPWLQTQASLCSQG--PEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGS 112
Q P+ W S+ + G EGQ G P Q LP PW Q S PRK + GS
Sbjct: 39 QSPETW-----SVAASGHPAEGQAGGP----QWWLPGPWTQGATGFASPLPRKHRRLWGS 89
Query: 113 QGP 115
GP
Sbjct: 90 GGP 92
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 30.8 bits (68), Expect = 0.32
Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 9/70 (12%)
Query: 56 PPKPWLQTQASLCSQGPEGQVG-----APPSQAQLQLPKPWLQTQASLHSWGPRKAPLVA 110
PP P Q + QGP G G PP +Q P Q H G + P
Sbjct: 710 PPGP----QGHIGPQGPPGPQGHLGPQGPPGTQGMQGPPGPRGMQGPPHPHGIQGGPGSQ 765
Query: 111 GSQGPQTEGP 120
G QGP ++GP
Sbjct: 766 GIQGPVSQGP 775
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 30.4 bits (67), Expect = 0.41
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 70 QGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQ 116
+GP+G+VGAP S+ + P ++ GPR P G GPQ
Sbjct: 308 EGPKGEVGAPGSKGEAGPTGP----MGAMGPLGPRGMPGERGRLGPQ 350
>gi|169162130 PREDICTED: tetratricopeptide repeat domain 34 [Homo
sapiens]
Length = 901
Score = 30.4 bits (67), Expect = 0.41
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 42 PFQVGVRASWMLLQPPKPWLQTQASLCSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSW 101
PF G R + +PW Q S + G+P S LP P + T+ L W
Sbjct: 12 PFLCGWRHAAPAATCTEPWSQAHGSPTHPNHTCEAGSPSSSTAPDLP-PCVPTELLLSPW 70
Query: 102 GPRKAPLVAGSQ 113
R + GSQ
Sbjct: 71 PTRSDHINGGSQ 82
>gi|217330639 phosphoinositide-3-kinase, regulatory subunit 5 [Homo
sapiens]
Length = 880
Score = 30.0 bits (66), Expect = 0.54
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 13/65 (20%)
Query: 61 LQTQASLCSQGPEGQVGAPPSQAQLQ--LPKPWLQTQASLHSW-------GPRKAPLVAG 111
L+ SLCS P + +PPS+AQ LP+P L TQ L SW R+ P ++G
Sbjct: 453 LRRAGSLCS--PLDEPVSPPSRAQRSRSLPQPKLGTQ--LPSWLLAPASRPQRRRPFLSG 508
Query: 112 SQGPQ 116
+ P+
Sbjct: 509 DEDPK 513
>gi|217330622 phosphoinositide-3-kinase, regulatory subunit 5 [Homo
sapiens]
Length = 880
Score = 30.0 bits (66), Expect = 0.54
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 13/65 (20%)
Query: 61 LQTQASLCSQGPEGQVGAPPSQAQLQ--LPKPWLQTQASLHSW-------GPRKAPLVAG 111
L+ SLCS P + +PPS+AQ LP+P L TQ L SW R+ P ++G
Sbjct: 453 LRRAGSLCS--PLDEPVSPPSRAQRSRSLPQPKLGTQ--LPSWLLAPASRPQRRRPFLSG 508
Query: 112 SQGPQ 116
+ P+
Sbjct: 509 DEDPK 513
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 30.0 bits (66), Expect = 0.54
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 56 PPKPWLQTQASLCSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGP 115
PP P +Q S + P PPSQA L P LQ S P +P ++ S P
Sbjct: 443 PPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPS-----PPASPPMSPSATP 497
Query: 116 QTEGP 120
+ P
Sbjct: 498 PPQAP 502
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 30.0 bits (66), Expect = 0.54
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 56 PPKPWLQTQASLCSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGP 115
PP P +Q S + P PPSQA L P LQ S P +P ++ S P
Sbjct: 668 PPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPS-----PPASPPMSPSATP 722
Query: 116 QTEGP 120
+ P
Sbjct: 723 PPQAP 727
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 30.0 bits (66), Expect = 0.54
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 56 PPKPWLQTQASLCSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGP 115
PP P +Q S + P PPSQA L P LQ S P +P ++ S P
Sbjct: 404 PPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPS-----PPASPPMSPSATP 458
Query: 116 QTEGP 120
+ P
Sbjct: 459 PPQAP 463
>gi|50428933 C1q domain containing 1 isoform 1 [Homo sapiens]
Length = 1127
Score = 30.0 bits (66), Expect = 0.54
Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 15/115 (13%)
Query: 13 PSRWLQQLGMARAACSMEKAKARDKRETRPFQVGVRASWMLLQPPKPWLQTQAS------ 66
PS+W Q ++A E+ K ++ + P Q+ + Q PK W + S
Sbjct: 469 PSQWKQDTPKSKAGYVQEEQKKQETPKLWPVQL-QKEQDPKKQTPKSWTPSMQSEQNTTK 527
Query: 67 -----LCSQGPEGQVGAPPS---QAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQ 113
+C + Q P S + Q Q+Q S SWG A L+ Q
Sbjct: 528 SWTTPMCEEQDSKQPETPKSWENNVESQKHSLTSQSQISPKSWGVATASLIPNDQ 582
>gi|50428931 C1q domain containing 1 isoform 3 [Homo sapiens]
Length = 793
Score = 30.0 bits (66), Expect = 0.54
Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 15/115 (13%)
Query: 13 PSRWLQQLGMARAACSMEKAKARDKRETRPFQVGVRASWMLLQPPKPWLQTQAS------ 66
PS+W Q ++A E+ K ++ + P Q+ + Q PK W + S
Sbjct: 136 PSQWKQDTPKSKAGYVQEEQKKQETPKLWPVQL-QKEQDPKKQTPKSWTPSMQSEQNTTK 194
Query: 67 -----LCSQGPEGQVGAPPS---QAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQ 113
+C + Q P S + Q Q+Q S SWG A L+ Q
Sbjct: 195 SWTTPMCEEQDSKQPETPKSWENNVESQKHSLTSQSQISPKSWGVATASLIPNDQ 249
>gi|23503235 C1q domain containing 1 isoform 2 [Homo sapiens]
Length = 1077
Score = 30.0 bits (66), Expect = 0.54
Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 15/115 (13%)
Query: 13 PSRWLQQLGMARAACSMEKAKARDKRETRPFQVGVRASWMLLQPPKPWLQTQAS------ 66
PS+W Q ++A E+ K ++ + P Q+ + Q PK W + S
Sbjct: 469 PSQWKQDTPKSKAGYVQEEQKKQETPKLWPVQL-QKEQDPKKQTPKSWTPSMQSEQNTTK 527
Query: 67 -----LCSQGPEGQVGAPPS---QAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQ 113
+C + Q P S + Q Q+Q S SWG A L+ Q
Sbjct: 528 SWTTPMCEEQDSKQPETPKSWENNVESQKHSLTSQSQISPKSWGVATASLIPNDQ 582
>gi|4758316 ets variant gene 5 (ets-related molecule) [Homo sapiens]
Length = 510
Score = 29.6 bits (65), Expect = 0.71
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 53 LLQPPKPWLQTQASLCSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGS 112
L PP+ L T + GP VG P+ L P P QT A P PL
Sbjct: 149 LFPPPQATLPTSGHAPAAGPVQGVGPAPAPHSLPEPGPQQQTFAVPR---PPHQPLQMPK 205
Query: 113 QGPQTEGPAE 122
P+ + P+E
Sbjct: 206 MMPENQYPSE 215
>gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 28.9 bits (63), Expect = 1.2
Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 13/96 (13%)
Query: 39 ETRPFQVGVRASWMLLQPPKPWLQTQASL--CSQGPEGQVGAPPSQAQLQLPKPWL---Q 93
E P Q R ++ Q +QT S C GP+ Q PP Q P+P Q
Sbjct: 154 EQAPIQSEPRVRLVMAQHMIRDIQTLLSRMECRGGPQPQHSQPPPQPPAVTPEPVALSSQ 213
Query: 94 TQASLHSWGPRKAPLV-------AGSQGPQ-TEGPA 121
T + S P + P+ A +Q P+ T GPA
Sbjct: 214 TSEPVESEAPPREPMEAEEVEERAPAQNPELTPGPA 249
>gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 28.9 bits (63), Expect = 1.2
Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 13/96 (13%)
Query: 39 ETRPFQVGVRASWMLLQPPKPWLQTQASL--CSQGPEGQVGAPPSQAQLQLPKPWL---Q 93
E P Q R ++ Q +QT S C GP+ Q PP Q P+P Q
Sbjct: 154 EQAPIQSEPRVRLVMAQHMIRDIQTLLSRMECRGGPQPQHSQPPPQPPAVTPEPVALSSQ 213
Query: 94 TQASLHSWGPRKAPLV-------AGSQGPQ-TEGPA 121
T + S P + P+ A +Q P+ T GPA
Sbjct: 214 TSEPVESEAPPREPMEAEEVEERAPAQNPELTPGPA 249
>gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 28.9 bits (63), Expect = 1.2
Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 13/96 (13%)
Query: 39 ETRPFQVGVRASWMLLQPPKPWLQTQASL--CSQGPEGQVGAPPSQAQLQLPKPWL---Q 93
E P Q R ++ Q +QT S C GP+ Q PP Q P+P Q
Sbjct: 154 EQAPIQSEPRVRLVMAQHMIRDIQTLLSRMECRGGPQPQHSQPPPQPPAVTPEPVALSSQ 213
Query: 94 TQASLHSWGPRKAPLV-------AGSQGPQ-TEGPA 121
T + S P + P+ A +Q P+ T GPA
Sbjct: 214 TSEPVESEAPPREPMEAEEVEERAPAQNPELTPGPA 249
>gi|157502184 kinesin family member 6 [Homo sapiens]
Length = 814
Score = 28.9 bits (63), Expect = 1.2
Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 22/135 (16%)
Query: 6 GHLEQLLPSRWLQQLGMA----------------RAACSMEKAKARDKR---ETRPFQVG 46
GHL++ + R +QQ+ + + +E+ K R K + +V
Sbjct: 604 GHLKEEITQRHIQQVALGISENMAVPLMPDQQEEKLRSQLEEEKRRYKTMFTRLKALKVE 663
Query: 47 VRASWMLLQPPKPWLQTQASL--CSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPR 104
+ +L+ K LQ + + + QV +P + L KP+LQT S H W
Sbjct: 664 IEHLQLLMDKAKVKLQKEFEVWWAEEATNLQVNSPAVNS-LDHTKPFLQTSDSQHEWSQL 722
Query: 105 KAPLVAGSQGPQTEG 119
+ +G Q +G
Sbjct: 723 LSNKSSGGWEVQDQG 737
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 [Homo
sapiens]
Length = 2231
Score = 28.9 bits (63), Expect = 1.2
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 57 PKPWLQTQASLCSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQ 116
P+P +++ S SQG + PP+ L +P P + AS+ S+ ++ ++ P+
Sbjct: 967 PQPESKSKDSYSSQG----ISQPPTPGNLPVPSPMSPSSASISSFHGDESDSISSPGWPK 1022
Query: 117 T 117
T
Sbjct: 1023 T 1023
>gi|239756916 PREDICTED: hypothetical protein [Homo sapiens]
Length = 464
Score = 28.5 bits (62), Expect = 1.6
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 57 PKPWLQTQASLCSQGPEGQVGAPPSQAQLQLPKP 90
P P + SLCS G Q G P +Q QL+ P+P
Sbjct: 48 PGPCSEPPTSLCSLGSLSQFGKPGAQLQLR-PRP 80
>gi|239751407 PREDICTED: hypothetical protein XP_002347839 [Homo
sapiens]
Length = 490
Score = 28.5 bits (62), Expect = 1.6
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 57 PKPWLQTQASLCSQGPEGQVGAPPSQAQLQLPKP 90
P P + SLCS G Q G P +Q QL+ P+P
Sbjct: 48 PGPCSEPPTSLCSLGSLSQFGKPGAQLQLR-PRP 80
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.128 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,290,383
Number of Sequences: 37866
Number of extensions: 301779
Number of successful extensions: 1256
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 1167
Number of HSP's gapped (non-prelim): 148
length of query: 130
length of database: 18,247,518
effective HSP length: 90
effective length of query: 40
effective length of database: 14,839,578
effective search space: 593583120
effective search space used: 593583120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.