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Search of human proteins with 239746409
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746409 PREDICTED: hypothetical protein XP_002343743 [Homo
sapiens]
(134 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757367 PREDICTED: hypothetical protein [Homo sapiens] 278 1e-75
gi|239751919 PREDICTED: hypothetical protein XP_002348040 [Homo ... 278 1e-75
gi|239746409 PREDICTED: hypothetical protein XP_002343743 [Homo ... 278 1e-75
gi|239756458 PREDICTED: similar to ZNF668 protein [Homo sapiens] 76 9e-15
gi|239750986 PREDICTED: hypothetical protein XP_002347637 [Homo ... 76 9e-15
gi|239745391 PREDICTED: hypothetical protein XP_002343487 [Homo ... 76 9e-15
gi|239754259 PREDICTED: hypothetical protein XP_002345937 [Homo ... 67 6e-12
gi|239748797 PREDICTED: hypothetical protein XP_002346805 [Homo ... 67 6e-12
gi|239742834 PREDICTED: hypothetical protein XP_002342675 [Homo ... 67 6e-12
gi|45827809 mitogen-activated protein kinase kinase kinase 6 [Ho... 30 0.44
gi|4758528 hepatocyte growth factor-regulated tyrosine kinase su... 30 0.58
gi|239757128 PREDICTED: similar to mCG141871 [Homo sapiens] 30 0.58
gi|113428456 PREDICTED: similar to mCG141871 [Homo sapiens] 30 0.58
gi|113428072 PREDICTED: similar to mCG141871 [Homo sapiens] 30 0.58
gi|55741630 hypothetical protein LOC198437 [Homo sapiens] 30 0.76
gi|169168928 PREDICTED: hypothetical protein [Homo sapiens] 29 0.99
gi|169168601 PREDICTED: hypothetical protein [Homo sapiens] 29 0.99
gi|169169523 PREDICTED: hypothetical protein [Homo sapiens] 29 0.99
gi|90186267 ankyrin repeat domain 55 isoform 1 [Homo sapiens] 29 1.3
gi|226246533 TOX high mobility group box family member 3 isoform... 28 1.7
gi|226054295 TOX high mobility group box family member 3 isoform... 28 1.7
gi|55956904 mitogen-activated protein kinase kinase kinase 4 iso... 28 1.7
gi|55956902 mitogen-activated protein kinase kinase kinase 4 iso... 28 1.7
gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo sap... 28 2.9
gi|38045896 RAB6-interacting protein 2 isoform delta [Homo sapiens] 28 2.9
gi|189491748 ataxin 1 [Homo sapiens] 27 3.8
gi|51479158 ataxin 1 [Homo sapiens] 27 3.8
gi|209862765 RUN and SH3 domain containing 2 [Homo sapiens] 27 4.9
gi|55741719 RUN and SH3 domain containing 2 [Homo sapiens] 27 4.9
gi|166235138 seizure related 6 homolog (mouse)-like 2 isoform 3 ... 27 6.4
>gi|239757367 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 278 bits (710), Expect = 1e-75
Identities = 134/134 (100%), Positives = 134/134 (100%)
Query: 1 MCLSYTPSLRIEDEPAGEPSSIPPTWLFQDISEALHQGGCLLAALRVLCHHPGPDLIRQD 60
MCLSYTPSLRIEDEPAGEPSSIPPTWLFQDISEALHQGGCLLAALRVLCHHPGPDLIRQD
Sbjct: 1 MCLSYTPSLRIEDEPAGEPSSIPPTWLFQDISEALHQGGCLLAALRVLCHHPGPDLIRQD 60
Query: 61 AQELLQHQQLQHLLLGARLRHQPLAAQLMQPGQGLVGPGSLLVDKFPETQAGELQVSRGP 120
AQELLQHQQLQHLLLGARLRHQPLAAQLMQPGQGLVGPGSLLVDKFPETQAGELQVSRGP
Sbjct: 61 AQELLQHQQLQHLLLGARLRHQPLAAQLMQPGQGLVGPGSLLVDKFPETQAGELQVSRGP 120
Query: 121 LRDGLGFFLLDSGC 134
LRDGLGFFLLDSGC
Sbjct: 121 LRDGLGFFLLDSGC 134
>gi|239751919 PREDICTED: hypothetical protein XP_002348040 [Homo
sapiens]
Length = 134
Score = 278 bits (710), Expect = 1e-75
Identities = 134/134 (100%), Positives = 134/134 (100%)
Query: 1 MCLSYTPSLRIEDEPAGEPSSIPPTWLFQDISEALHQGGCLLAALRVLCHHPGPDLIRQD 60
MCLSYTPSLRIEDEPAGEPSSIPPTWLFQDISEALHQGGCLLAALRVLCHHPGPDLIRQD
Sbjct: 1 MCLSYTPSLRIEDEPAGEPSSIPPTWLFQDISEALHQGGCLLAALRVLCHHPGPDLIRQD 60
Query: 61 AQELLQHQQLQHLLLGARLRHQPLAAQLMQPGQGLVGPGSLLVDKFPETQAGELQVSRGP 120
AQELLQHQQLQHLLLGARLRHQPLAAQLMQPGQGLVGPGSLLVDKFPETQAGELQVSRGP
Sbjct: 61 AQELLQHQQLQHLLLGARLRHQPLAAQLMQPGQGLVGPGSLLVDKFPETQAGELQVSRGP 120
Query: 121 LRDGLGFFLLDSGC 134
LRDGLGFFLLDSGC
Sbjct: 121 LRDGLGFFLLDSGC 134
>gi|239746409 PREDICTED: hypothetical protein XP_002343743 [Homo
sapiens]
Length = 134
Score = 278 bits (710), Expect = 1e-75
Identities = 134/134 (100%), Positives = 134/134 (100%)
Query: 1 MCLSYTPSLRIEDEPAGEPSSIPPTWLFQDISEALHQGGCLLAALRVLCHHPGPDLIRQD 60
MCLSYTPSLRIEDEPAGEPSSIPPTWLFQDISEALHQGGCLLAALRVLCHHPGPDLIRQD
Sbjct: 1 MCLSYTPSLRIEDEPAGEPSSIPPTWLFQDISEALHQGGCLLAALRVLCHHPGPDLIRQD 60
Query: 61 AQELLQHQQLQHLLLGARLRHQPLAAQLMQPGQGLVGPGSLLVDKFPETQAGELQVSRGP 120
AQELLQHQQLQHLLLGARLRHQPLAAQLMQPGQGLVGPGSLLVDKFPETQAGELQVSRGP
Sbjct: 61 AQELLQHQQLQHLLLGARLRHQPLAAQLMQPGQGLVGPGSLLVDKFPETQAGELQVSRGP 120
Query: 121 LRDGLGFFLLDSGC 134
LRDGLGFFLLDSGC
Sbjct: 121 LRDGLGFFLLDSGC 134
>gi|239756458 PREDICTED: similar to ZNF668 protein [Homo sapiens]
Length = 377
Score = 75.9 bits (185), Expect = 9e-15
Identities = 48/105 (45%), Positives = 59/105 (56%), Gaps = 3/105 (2%)
Query: 29 QDISEALHQGGCLLAALRVLCHHPGPDLIRQDAQELLQHQQLQHLLLGARLRHQPLAAQL 88
++ + LHQG LL A RVL HP DL Q QELLQHQQLQ LLLG +L QP AA+L
Sbjct: 206 KETNMVLHQGDSLLTASRVLLTHPALDLPWQHCQELLQHQQLQDLLLGTQLGPQPAAAEL 265
Query: 89 MQPGQGLVGPGSLLVDKFPETQAGELQVSRGPLRDGLGFFLLDSG 133
+ +GL+ P + V + PE A + P LG FL G
Sbjct: 266 PELAEGLMRPMHIPVAELPEALAAGFGI---PAILMLGRFLFPGG 307
>gi|239750986 PREDICTED: hypothetical protein XP_002347637 [Homo
sapiens]
Length = 377
Score = 75.9 bits (185), Expect = 9e-15
Identities = 48/105 (45%), Positives = 59/105 (56%), Gaps = 3/105 (2%)
Query: 29 QDISEALHQGGCLLAALRVLCHHPGPDLIRQDAQELLQHQQLQHLLLGARLRHQPLAAQL 88
++ + LHQG LL A RVL HP DL Q QELLQHQQLQ LLLG +L QP AA+L
Sbjct: 206 KETNMVLHQGDSLLTASRVLLTHPALDLPWQHCQELLQHQQLQDLLLGTQLGPQPAAAEL 265
Query: 89 MQPGQGLVGPGSLLVDKFPETQAGELQVSRGPLRDGLGFFLLDSG 133
+ +GL+ P + V + PE A + P LG FL G
Sbjct: 266 PELAEGLMRPMHIPVAELPEALAAGFGI---PAILMLGRFLFPGG 307
>gi|239745391 PREDICTED: hypothetical protein XP_002343487 [Homo
sapiens]
Length = 417
Score = 75.9 bits (185), Expect = 9e-15
Identities = 48/105 (45%), Positives = 59/105 (56%), Gaps = 3/105 (2%)
Query: 29 QDISEALHQGGCLLAALRVLCHHPGPDLIRQDAQELLQHQQLQHLLLGARLRHQPLAAQL 88
++ + LHQG LL A RVL HP DL Q QELLQHQQLQ LLLG +L QP AA+L
Sbjct: 246 KETNMVLHQGDSLLTASRVLLTHPALDLPWQHCQELLQHQQLQDLLLGTQLGPQPAAAEL 305
Query: 89 MQPGQGLVGPGSLLVDKFPETQAGELQVSRGPLRDGLGFFLLDSG 133
+ +GL+ P + V + PE A + P LG FL G
Sbjct: 306 PELAEGLMRPMHIPVAELPEALAAGFGI---PAILMLGRFLFPGG 347
>gi|239754259 PREDICTED: hypothetical protein XP_002345937 [Homo
sapiens]
Length = 105
Score = 66.6 bits (161), Expect = 6e-12
Identities = 37/69 (53%), Positives = 44/69 (63%)
Query: 47 VLCHHPGPDLIRQDAQELLQHQQLQHLLLGARLRHQPLAAQLMQPGQGLVGPGSLLVDKF 106
+L HP + RQD QELLQHQQLQ LLL LR QPL+A+L +P Q L G SL V +
Sbjct: 1 MLLPHPALQIPRQDGQELLQHQQLQDLLLAVHLRLQPLSAELSEPTQRLAGACSLRVAEA 60
Query: 107 PETQAGELQ 115
E AG L+
Sbjct: 61 SEALAGALR 69
>gi|239748797 PREDICTED: hypothetical protein XP_002346805 [Homo
sapiens]
Length = 105
Score = 66.6 bits (161), Expect = 6e-12
Identities = 37/69 (53%), Positives = 44/69 (63%)
Query: 47 VLCHHPGPDLIRQDAQELLQHQQLQHLLLGARLRHQPLAAQLMQPGQGLVGPGSLLVDKF 106
+L HP + RQD QELLQHQQLQ LLL LR QPL+A+L +P Q L G SL V +
Sbjct: 1 MLLPHPALQIPRQDGQELLQHQQLQDLLLAVHLRLQPLSAELSEPTQRLAGACSLRVAEA 60
Query: 107 PETQAGELQ 115
E AG L+
Sbjct: 61 SEALAGALR 69
>gi|239742834 PREDICTED: hypothetical protein XP_002342675 [Homo
sapiens]
Length = 105
Score = 66.6 bits (161), Expect = 6e-12
Identities = 37/69 (53%), Positives = 44/69 (63%)
Query: 47 VLCHHPGPDLIRQDAQELLQHQQLQHLLLGARLRHQPLAAQLMQPGQGLVGPGSLLVDKF 106
+L HP + RQD QELLQHQQLQ LLL LR QPL+A+L +P Q L G SL V +
Sbjct: 1 MLLPHPALQIPRQDGQELLQHQQLQDLLLAVHLRLQPLSAELSEPTQRLAGACSLRVAEA 60
Query: 107 PETQAGELQ 115
E AG L+
Sbjct: 61 SEALAGALR 69
>gi|45827809 mitogen-activated protein kinase kinase kinase 6 [Homo
sapiens]
Length = 1288
Score = 30.4 bits (67), Expect = 0.44
Identities = 35/107 (32%), Positives = 43/107 (40%), Gaps = 15/107 (14%)
Query: 2 CLSY--TPSLRIEDEPAGEPSSIPPTWLFQDISEALHQGGCLLAALRVLCHHPGPDLIRQ 59
CLSY T LR+ +EPA E + P LHQ A L + P L
Sbjct: 962 CLSYGGTSQLRVPEEPAAEEPASPEE---SSGLSLLHQESKRRAMLAAVLEQELPALAEN 1018
Query: 60 DAQELLQHQ-------QLQHLL--LGARLRHQPLAAQLMQPGQGLVG 97
QE Q Q ++ LL LGA + H P QL Q + L G
Sbjct: 1019 LHQEQKQEQGARLGRNHVEELLRCLGAHI-HTPNRRQLAQELRALQG 1064
>gi|4758528 hepatocyte growth factor-regulated tyrosine kinase
substrate [Homo sapiens]
Length = 777
Score = 30.0 bits (66), Expect = 0.58
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 83 PLAAQLMQPGQGLVGPGSLLVDKFPETQAGELQVSRGPLRD 123
PL QPG+G P +++ + PET + + S GP +
Sbjct: 353 PLTEPAAQPGEGHAAPTNVVENPLPETDSQPIPPSGGPFSE 393
>gi|239757128 PREDICTED: similar to mCG141871 [Homo sapiens]
Length = 306
Score = 30.0 bits (66), Expect = 0.58
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 13 DEPAGEPSSIPPTWLFQDISEALHQGGCLLAALRVLCHHPGPDLIRQ 59
+ PA P+++ P + + A G L A L ++C H G D +RQ
Sbjct: 255 EPPAPAPAALEPAPVVALVLAAFVLGAALAAGLGLVCAHSGTDDLRQ 301
>gi|113428456 PREDICTED: similar to mCG141871 [Homo sapiens]
Length = 358
Score = 30.0 bits (66), Expect = 0.58
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 13 DEPAGEPSSIPPTWLFQDISEALHQGGCLLAALRVLCHHPGPDLIRQ 59
+ PA P+++ P + + A G L A L ++C H G D +RQ
Sbjct: 307 EPPAPAPAALEPAPVVALVLAAFVLGAALAAGLGLVCAHSGTDDLRQ 353
>gi|113428072 PREDICTED: similar to mCG141871 [Homo sapiens]
Length = 358
Score = 30.0 bits (66), Expect = 0.58
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 13 DEPAGEPSSIPPTWLFQDISEALHQGGCLLAALRVLCHHPGPDLIRQ 59
+ PA P+++ P + + A G L A L ++C H G D +RQ
Sbjct: 307 EPPAPAPAALEPAPVVALVLAAFVLGAALAAGLGLVCAHSGTDDLRQ 353
>gi|55741630 hypothetical protein LOC198437 [Homo sapiens]
Length = 240
Score = 29.6 bits (65), Expect = 0.76
Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 52 PGPDLIRQDAQELLQHQQLQHLLLGARLRHQPLAAQLMQPGQGLVGPGSLLVDKFPETQA 111
PG L Q +L Q+ +HLL G L AA G V PG + D P TQ+
Sbjct: 42 PGWALTPQGLAAMLPAQRHRHLLFGDLLEDVGAAASTFPCGS--VEPGYRMPDPRPWTQS 99
Query: 112 GELQVSR 118
EL R
Sbjct: 100 LELPAER 106
>gi|169168928 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 29.3 bits (64), Expect = 0.99
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 40 CLLAALRVLCHHPGPDLIRQDAQEL 64
CLL++L ++C HP + R++AQEL
Sbjct: 129 CLLSSLWMVCTHPCLQVFRKNAQEL 153
>gi|169168601 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 29.3 bits (64), Expect = 0.99
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 40 CLLAALRVLCHHPGPDLIRQDAQEL 64
CLL++L ++C HP + R++AQEL
Sbjct: 129 CLLSSLWMVCTHPCLQVFRKNAQEL 153
>gi|169169523 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 29.3 bits (64), Expect = 0.99
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 40 CLLAALRVLCHHPGPDLIRQDAQEL 64
CLL++L ++C HP + R++AQEL
Sbjct: 129 CLLSSLWMVCTHPCLQVFRKNAQEL 153
>gi|90186267 ankyrin repeat domain 55 isoform 1 [Homo sapiens]
Length = 614
Score = 28.9 bits (63), Expect = 1.3
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 24 PTWLFQDISEALH---QGGCLLAALRVLCHHPGPDLIRQD 60
PT + +D ALH Q G + +L HH GP +I D
Sbjct: 188 PTLVDKDFKTALHWAVQSGNRILCSIILSHHQGPSIINYD 227
>gi|226246533 TOX high mobility group box family member 3 isoform 2
[Homo sapiens]
Length = 571
Score = 28.5 bits (62), Expect = 1.7
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 57 IRQDAQELLQHQQLQHLLLGAR---LRHQPLAAQLMQPGQGLVGP 98
++Q Q+ LQ QQLQH+ ++ +H P+A+Q+ P + P
Sbjct: 501 LQQQLQQRLQLQQLQHMQHQSQPSPRQHSPVASQITSPIPAIGSP 545
>gi|226054295 TOX high mobility group box family member 3 isoform 1
[Homo sapiens]
Length = 576
Score = 28.5 bits (62), Expect = 1.7
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 57 IRQDAQELLQHQQLQHLLLGAR---LRHQPLAAQLMQPGQGLVGP 98
++Q Q+ LQ QQLQH+ ++ +H P+A+Q+ P + P
Sbjct: 506 LQQQLQQRLQLQQLQHMQHQSQPSPRQHSPVASQITSPIPAIGSP 550
>gi|55956904 mitogen-activated protein kinase kinase kinase 4
isoform a [Homo sapiens]
Length = 1608
Score = 28.5 bits (62), Expect = 1.7
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 9 LRIEDEPAGEPSSIPPTWLFQDISEALHQGGCLL 42
LR+E PAGEPS + L ++ E L +GG L+
Sbjct: 633 LRLEQRPAGEPSLLSIKQLVRECKEVL-KGGLLM 665
>gi|55956902 mitogen-activated protein kinase kinase kinase 4
isoform b [Homo sapiens]
Length = 1558
Score = 28.5 bits (62), Expect = 1.7
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 9 LRIEDEPAGEPSSIPPTWLFQDISEALHQGGCLL 42
LR+E PAGEPS + L ++ E L +GG L+
Sbjct: 633 LRLEQRPAGEPSLLSIKQLVRECKEVL-KGGLLM 665
>gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo sapiens]
Length = 1116
Score = 27.7 bits (60), Expect = 2.9
Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 50 HHPGPDLIRQDAQELLQHQQLQHLLLG--ARLRH--QPLAAQLMQPGQGLVGPGSLLVDK 105
H P PD I Q EL Q++ L +G L H PL +GL P S +D
Sbjct: 1002 HKPSPDQIIQPLLELDQNRSKLKLYIGHLTTLCHDRDPLIL------RGLTPPASYNLDD 1055
Query: 106 FPETQAGELQ-VSRGPLRDGL 125
ELQ ++RG L+D L
Sbjct: 1056 DQAAWENELQKMTRGQLQDEL 1076
>gi|38045896 RAB6-interacting protein 2 isoform delta [Homo sapiens]
Length = 1088
Score = 27.7 bits (60), Expect = 2.9
Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 50 HHPGPDLIRQDAQELLQHQQLQHLLLG--ARLRH--QPLAAQLMQPGQGLVGPGSLLVDK 105
H P PD I Q EL Q++ L +G L H PL +GL P S +D
Sbjct: 974 HKPSPDQIIQPLLELDQNRSKLKLYIGHLTTLCHDRDPLIL------RGLTPPASYNLDD 1027
Query: 106 FPETQAGELQ-VSRGPLRDGL 125
ELQ ++RG L+D L
Sbjct: 1028 DQAAWENELQKMTRGQLQDEL 1048
>gi|189491748 ataxin 1 [Homo sapiens]
Length = 815
Score = 27.3 bits (59), Expect = 3.8
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Query: 41 LLAALRVLCHHPGPDLIRQDAQELLQHQQLQHLLLGARLRHQPLAAQLMQPGQGLVGPGS 100
LLA + L PG +Q Q+ Q QQ QH + + Q Q + GL+ PGS
Sbjct: 180 LLANMGSLSQTPGHKAEQQQQQQQQQQQQHQH-QQQQQQQQQQQQQQHLSRAPGLITPGS 238
Query: 101 LLVDKFPETQAGELQVSRGPLRDG 124
P Q + +S P G
Sbjct: 239 ----PPPAQQNQYVHISSSPQNTG 258
>gi|51479158 ataxin 1 [Homo sapiens]
Length = 815
Score = 27.3 bits (59), Expect = 3.8
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Query: 41 LLAALRVLCHHPGPDLIRQDAQELLQHQQLQHLLLGARLRHQPLAAQLMQPGQGLVGPGS 100
LLA + L PG +Q Q+ Q QQ QH + + Q Q + GL+ PGS
Sbjct: 180 LLANMGSLSQTPGHKAEQQQQQQQQQQQQHQH-QQQQQQQQQQQQQQHLSRAPGLITPGS 238
Query: 101 LLVDKFPETQAGELQVSRGPLRDG 124
P Q + +S P G
Sbjct: 239 ----PPPAQQNQYVHISSSPQNTG 258
>gi|209862765 RUN and SH3 domain containing 2 [Homo sapiens]
Length = 1516
Score = 26.9 bits (58), Expect = 4.9
Identities = 31/100 (31%), Positives = 39/100 (39%), Gaps = 7/100 (7%)
Query: 4 SYTPSLRIEDEPAGEPSSIPPTWLFQDISEALHQGGCLLAALRVLCHHPGPDLIRQDAQE 63
S +P LR+ + + S P QD L +G C +L + PG DL+ D
Sbjct: 557 SGSPPLRVSVGDSSQEFS-PIQEAQQDRGAPLDEGTCCSHSLPPMPLGPGMDLLGPDPSP 615
Query: 64 LLQHQQLQ--HLL----LGARLRHQPLAAQLMQPGQGLVG 97
Q Q H G R Q AQLM PG L G
Sbjct: 616 PWSTQVCQGPHSSEMPPAGLRATGQGPLAQLMDPGPALPG 655
>gi|55741719 RUN and SH3 domain containing 2 [Homo sapiens]
Length = 1516
Score = 26.9 bits (58), Expect = 4.9
Identities = 31/100 (31%), Positives = 39/100 (39%), Gaps = 7/100 (7%)
Query: 4 SYTPSLRIEDEPAGEPSSIPPTWLFQDISEALHQGGCLLAALRVLCHHPGPDLIRQDAQE 63
S +P LR+ + + S P QD L +G C +L + PG DL+ D
Sbjct: 557 SGSPPLRVSVGDSSQEFS-PIQEAQQDRGAPLDEGTCCSHSLPPMPLGPGMDLLGPDPSP 615
Query: 64 LLQHQQLQ--HLL----LGARLRHQPLAAQLMQPGQGLVG 97
Q Q H G R Q AQLM PG L G
Sbjct: 616 PWSTQVCQGPHSSEMPPAGLRATGQGPLAQLMDPGPALPG 655
>gi|166235138 seizure related 6 homolog (mouse)-like 2 isoform 3
[Homo sapiens]
Length = 840
Score = 26.6 bits (57), Expect = 6.4
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 12 EDEPAGEPSSIPPTWLFQDISEALHQGGCLLAALRVLCHHPGPDLIRQDAQE 63
E+E EP S PT + ++E LH G LL + + PGP L + +E
Sbjct: 32 EEEILPEPGSETPTVASEALAELLH--GALLRRGPEMGYLPGPPLGPEGGEE 81
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.141 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,596,170
Number of Sequences: 37866
Number of extensions: 323585
Number of successful extensions: 849
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 826
Number of HSP's gapped (non-prelim): 33
length of query: 134
length of database: 18,247,518
effective HSP length: 91
effective length of query: 43
effective length of database: 14,801,712
effective search space: 636473616
effective search space used: 636473616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.