Guide to the Human Genome
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Name: LOC100289263 Sequence: fasta or formatted (162aa) NCBI GI: 239746020
Description:

PREDICTED: hypothetical protein XP_002344182

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.7         19           4
 C cysteine            1.9          3           1
 D aspartate           4.3          7           1
 E glutamate           9.3         15           2
 F phenylalanine       0.0          0           0
 G glycine            13.6         22           3
 H histidine          11.1         18           2
 I isoleucine          3.1          5           1
 K lysine              0.0          0           0
 L leucine            10.5         17           2
 M methionine          0.6          1           1
 N asparagine          0.0          0           0
 P proline             2.5          4           1
 Q glutamine           6.8         11           1
 R arginine            9.9         16           2
 S serine              1.2          2           1
 T threonine           1.2          2           1
 V valine             12.3         20           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344182 
LOC100133479          0.590   PREDICTED: hypothetical protein 
LOC100133479          0.590   PREDICTED: hypothetical protein 
LOC100293962          0.121   PREDICTED: hypothetical protein 
LOC100293929          0.091   PREDICTED: hypothetical protein 
LOC100288366          0.091   PREDICTED: hypothetical protein 
LOC100288366          0.091   PREDICTED: hypothetical protein XP_002343207 
LOC100128789          0.016   PREDICTED: hypothetical protein 
LOC100128789          0.016   PREDICTED: hypothetical protein 
LOC100128789          0.016   PREDICTED: hypothetical protein 
CCDC88B               0.016   coiled-coil domain containing 88 
DAPK1                 0.016   death-associated protein kinase 1 
ASXL1                 0.016   additional sex combs like 1 
LOC100292149          0.013   PREDICTED: hypothetical protein 
LOC100292960          0.013   PREDICTED: hypothetical protein 
LOC100290301          0.013   PREDICTED: hypothetical protein XP_002346413 
LOC100287174          0.013   PREDICTED: hypothetical protein XP_002342113 
LOC100291596          0.010   PREDICTED: hypothetical protein XP_002344746 
LOC100288068          0.010   PREDICTED: hypothetical protein 
LOC100288068          0.010   PREDICTED: hypothetical protein XP_002343259 
DCHS1                 0.010   dachsous 1 precursor 
NP                    0.010   nucleoside phosphorylase 
CDKN2A                0.010   cyclin-dependent kinase inhibitor 2A isoform 1 
LOC100128598          0.007   PREDICTED: hypothetical protein 
LOC100292982          0.007   PREDICTED: hypothetical protein 
LOC100128598          0.007   PREDICTED: hypothetical protein 
LOC100289817          0.007   PREDICTED: hypothetical protein XP_002347376 
LOC100289240          0.007   PREDICTED: hypothetical protein XP_002343214 
BHLHE22               0.007   basic helix-loop-helix domain containing, class B, 5...
FOXK1                 0.007   forkhead box K1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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