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Search of human proteins with 239745919
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745919 PREDICTED: hypothetical protein XP_002343617 [Homo
sapiens]
(235 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751409 PREDICTED: hypothetical protein XP_002347840 [Homo ... 491 e-139
gi|239745919 PREDICTED: hypothetical protein XP_002343617 [Homo ... 491 e-139
gi|239756914 PREDICTED: hypothetical protein [Homo sapiens] 408 e-114
gi|148833504 interleukin 16 isoform 2 [Homo sapiens] 37 0.019
gi|239749693 PREDICTED: similar to hCG1806822 [Homo sapiens] 34 0.12
gi|148491070 CTP synthase [Homo sapiens] 34 0.12
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 32 0.36
gi|239749293 PREDICTED: hypothetical protein XP_002346984 [Homo ... 32 0.36
gi|239743383 PREDICTED: hypothetical protein XP_002342846 [Homo ... 32 0.36
gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens] 32 0.47
gi|29171711 melanoma antigen family B, 1 [Homo sapiens] 32 0.47
gi|29171709 melanoma antigen family B, 1 [Homo sapiens] 32 0.47
gi|29171707 melanoma antigen family B, 1 [Homo sapiens] 32 0.47
gi|191252814 RIMS binding protein 3B [Homo sapiens] 32 0.62
gi|191252806 RIMS binding protein 3C [Homo sapiens] 32 0.62
gi|239757324 PREDICTED: hypothetical protein XP_002345241 [Homo ... 32 0.62
gi|239751831 PREDICTED: hypothetical protein XP_002348009 [Homo ... 32 0.62
gi|239746324 PREDICTED: hypothetical protein XP_002343730 [Homo ... 32 0.62
gi|215820619 zinc finger protein 646 [Homo sapiens] 31 0.81
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens] 31 1.1
gi|170932471 hypothetical protein LOC79703 [Homo sapiens] 31 1.1
gi|58218966 hypothetical protein LOC339201 [Homo sapiens] 31 1.1
gi|23397666 transcriptional co-repressor Sin3A [Homo sapiens] 30 1.4
gi|223941785 transcriptional co-repressor Sin3A [Homo sapiens] 30 1.4
gi|223941782 transcriptional co-repressor Sin3A [Homo sapiens] 30 1.4
gi|32479521 dishevelled 1 [Homo sapiens] 30 1.4
gi|19718731 bromodomain-containing protein 4 isoform long [Homo ... 30 1.4
gi|153792195 DKFZP434H0735 protein [Homo sapiens] 30 1.4
gi|239754887 PREDICTED: hypothetical protein XP_002346152 [Homo ... 30 1.8
gi|239749426 PREDICTED: hypothetical protein XP_002347042 [Homo ... 30 1.8
>gi|239751409 PREDICTED: hypothetical protein XP_002347840 [Homo
sapiens]
Length = 235
Score = 491 bits (1265), Expect = e-139
Identities = 235/235 (100%), Positives = 235/235 (100%)
Query: 1 MAPHGVQALGPGGWLGKCRVLVWRNNSMPQSRGVALGPQLAATALSDKAQSAQYDPTQIC 60
MAPHGVQALGPGGWLGKCRVLVWRNNSMPQSRGVALGPQLAATALSDKAQSAQYDPTQIC
Sbjct: 1 MAPHGVQALGPGGWLGKCRVLVWRNNSMPQSRGVALGPQLAATALSDKAQSAQYDPTQIC 60
Query: 61 QKLTFCLSHQRRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARR 120
QKLTFCLSHQRRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARR
Sbjct: 61 QKLTFCLSHQRRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARR 120
Query: 121 HPANPQGRPGASLGAGAISLRQRLEVHGEGLLFRLGRPLPVGPGQDVEHRPTEAGQQQAQ 180
HPANPQGRPGASLGAGAISLRQRLEVHGEGLLFRLGRPLPVGPGQDVEHRPTEAGQQQAQ
Sbjct: 121 HPANPQGRPGASLGAGAISLRQRLEVHGEGLLFRLGRPLPVGPGQDVEHRPTEAGQQQAQ 180
Query: 181 HVGQDTLGLKCAILAPAGVEQQCLLQAQQGGAHGKEEDGSTKEDVLWAVAAPQGE 235
HVGQDTLGLKCAILAPAGVEQQCLLQAQQGGAHGKEEDGSTKEDVLWAVAAPQGE
Sbjct: 181 HVGQDTLGLKCAILAPAGVEQQCLLQAQQGGAHGKEEDGSTKEDVLWAVAAPQGE 235
>gi|239745919 PREDICTED: hypothetical protein XP_002343617 [Homo
sapiens]
Length = 235
Score = 491 bits (1265), Expect = e-139
Identities = 235/235 (100%), Positives = 235/235 (100%)
Query: 1 MAPHGVQALGPGGWLGKCRVLVWRNNSMPQSRGVALGPQLAATALSDKAQSAQYDPTQIC 60
MAPHGVQALGPGGWLGKCRVLVWRNNSMPQSRGVALGPQLAATALSDKAQSAQYDPTQIC
Sbjct: 1 MAPHGVQALGPGGWLGKCRVLVWRNNSMPQSRGVALGPQLAATALSDKAQSAQYDPTQIC 60
Query: 61 QKLTFCLSHQRRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARR 120
QKLTFCLSHQRRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARR
Sbjct: 61 QKLTFCLSHQRRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARR 120
Query: 121 HPANPQGRPGASLGAGAISLRQRLEVHGEGLLFRLGRPLPVGPGQDVEHRPTEAGQQQAQ 180
HPANPQGRPGASLGAGAISLRQRLEVHGEGLLFRLGRPLPVGPGQDVEHRPTEAGQQQAQ
Sbjct: 121 HPANPQGRPGASLGAGAISLRQRLEVHGEGLLFRLGRPLPVGPGQDVEHRPTEAGQQQAQ 180
Query: 181 HVGQDTLGLKCAILAPAGVEQQCLLQAQQGGAHGKEEDGSTKEDVLWAVAAPQGE 235
HVGQDTLGLKCAILAPAGVEQQCLLQAQQGGAHGKEEDGSTKEDVLWAVAAPQGE
Sbjct: 181 HVGQDTLGLKCAILAPAGVEQQCLLQAQQGGAHGKEEDGSTKEDVLWAVAAPQGE 235
>gi|239756914 PREDICTED: hypothetical protein [Homo sapiens]
Length = 241
Score = 408 bits (1048), Expect = e-114
Identities = 197/199 (98%), Positives = 197/199 (98%)
Query: 37 GPQLAATALSDKAQSAQYDPTQICQKLTFCLSHQRRKEKQRRRRPDPRKQHSNRCSCTHA 96
G LAATALSDKAQSAQYDPTQICQKLTFCLSHQRRKEKQRRRRPDPRKQHSNRCSCTHA
Sbjct: 43 GLLLAATALSDKAQSAQYDPTQICQKLTFCLSHQRRKEKQRRRRPDPRKQHSNRCSCTHA 102
Query: 97 PACCQSHSPEPAVLKTPQQGQARRHPANPQGRPGASLGAGAISLRQRLEVHGEGLLFRLG 156
PACCQSHSPEPAVLKTPQQGQARRHPANPQGRPGASLGAGAISLRQRLEVHGEGLLFRLG
Sbjct: 103 PACCQSHSPEPAVLKTPQQGQARRHPANPQGRPGASLGAGAISLRQRLEVHGEGLLFRLG 162
Query: 157 RPLPVGPGQDVEHRPTEAGQQQAQHVGQDTLGLKCAILAPAGVEQQCLLQAQQGGAHGKE 216
RPLPVGPGQDVEHRPTEAGQQQAQHVGQDTLGLKCAILAPAGVEQQCLLQAQQGGAHGKE
Sbjct: 163 RPLPVGPGQDVEHRPTEAGQQQAQHVGQDTLGLKCAILAPAGVEQQCLLQAQQGGAHGKE 222
Query: 217 EDGSTKEDVLWAVAAPQGE 235
EDGSTKEDVLWAVAAPQGE
Sbjct: 223 EDGSTKEDVLWAVAAPQGE 241
>gi|148833504 interleukin 16 isoform 2 [Homo sapiens]
Length = 1332
Score = 36.6 bits (83), Expect = 0.019
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 14/77 (18%)
Query: 72 RKEKQRRRRPDPRK--------------QHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQ 117
RK + +P PRK + ++ CS H P C + E L PQ+
Sbjct: 590 RKPMSSKPKPPPRKYFKSDSDPQKSLEERENSSCSSGHTPPTCGQEARELLPLLLPQEDT 649
Query: 118 ARRHPANPQGRPGASLG 134
A R P+ G PG +G
Sbjct: 650 AGRSPSASAGCPGPGIG 666
>gi|239749693 PREDICTED: similar to hCG1806822 [Homo sapiens]
Length = 1180
Score = 33.9 bits (76), Expect = 0.12
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 66 CLSHQRRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQ 114
C + RRR P+ HS + H+P HSPE AV +P+
Sbjct: 31 CCQMSKEVSLYRRRAPEAAVFHSPEAAVYHSPEATVYHSPEAAVYHSPE 79
Score = 30.8 bits (68), Expect = 1.1
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 81 PDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARRHPANPQGRPGASL 133
P+ HS + H+P HSPE AV ++P+ R A P A++
Sbjct: 110 PEAAVYHSPEAAVFHSPEAAVFHSPEAAVYRSPEAAVFRSPEAAVYRSPEAAV 162
Score = 29.6 bits (65), Expect = 2.3
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 67 LSHQRRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQ 114
L +R E P+ HS + H+P HSPE AV +P+
Sbjct: 40 LYRRRAPEAAVFHSPEAAVYHSPEATVYHSPEAAVYHSPEAAVFHSPE 87
Score = 29.6 bits (65), Expect = 2.3
Identities = 17/53 (32%), Positives = 22/53 (41%)
Query: 81 PDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARRHPANPQGRPGASL 133
P+ HS S H+P HSPE AV +P A PGA++
Sbjct: 851 PEAAVYHSPEASVFHSPEAAVYHSPEAAVFHSPGAAVFHSPGAAVFHSPGAAV 903
Score = 29.3 bits (64), Expect = 3.1
Identities = 29/110 (26%), Positives = 37/110 (33%), Gaps = 6/110 (5%)
Query: 71 RRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARRHPANPQGRPG 130
R E R P+ S + H P HSPE AV +P+ A PG
Sbjct: 388 RSPEAAVYRSPEAAVYRSPEAAVFHCPEAAVYHSPEAAVYHSPEASVFHSPGAAVFHSPG 447
Query: 131 ASL----GAGAISLRQRLEVH--GEGLLFRLGRPLPVGPGQDVEHRPTEA 174
A++ GA H G + G + PG V H P A
Sbjct: 448 AAVYHSPGAAVFHSPGAAVYHSPGAAVYHSPGAAVFHSPGAAVYHSPGAA 497
Score = 28.9 bits (63), Expect = 4.0
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 81 PDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQ 114
P+ HS + H+P HSPE AV +P+
Sbjct: 94 PEAAVYHSPEAAVFHSPEAAVYHSPEAAVFHSPE 127
Score = 28.9 bits (63), Expect = 4.0
Identities = 16/53 (30%), Positives = 22/53 (41%)
Query: 81 PDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARRHPANPQGRPGASL 133
P+ HS + H+P HSP AV +P R A PGA++
Sbjct: 867 PEAAVYHSPEAAVFHSPGAAVFHSPGAAVFHSPGAAVYRSPGAAVYRSPGAAV 919
Score = 28.5 bits (62), Expect = 5.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 81 PDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQ 114
P+ HS + H+P HSPE AV +P+
Sbjct: 62 PEATVYHSPEAAVYHSPEAAVFHSPEAAVYHSPE 95
Score = 28.5 bits (62), Expect = 5.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 81 PDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQ 114
P+ HS + H+P HSPE AV +P+
Sbjct: 70 PEAAVYHSPEAAVFHSPEAAVYHSPEAAVYHSPE 103
Score = 28.5 bits (62), Expect = 5.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 81 PDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQ 114
P+ HS + H+P HSPE AV +P+
Sbjct: 86 PEAAVYHSPEAAVYHSPEAAVFHSPEAAVYHSPE 119
Score = 28.5 bits (62), Expect = 5.2
Identities = 16/53 (30%), Positives = 23/53 (43%)
Query: 81 PDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARRHPANPQGRPGASL 133
P+ HS + H+P HSPE AV +P+ R A P A++
Sbjct: 102 PEAAVFHSPEAAVYHSPEAAVFHSPEAAVFHSPEAAVYRSPEAAVFRSPEAAV 154
Score = 28.5 bits (62), Expect = 5.2
Identities = 27/102 (26%), Positives = 35/102 (34%), Gaps = 6/102 (5%)
Query: 79 RRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARRHPANPQGRPGASL----G 134
R P+ S + H P HSPE AV +P+ A PGA++ G
Sbjct: 220 RSPEAAVYRSPEAAVFHCPEAAVYHSPEAAVYHSPEASVFHSPGAAVFHSPGAAVYHSPG 279
Query: 135 AGAISLRQRLEVH--GEGLLFRLGRPLPVGPGQDVEHRPTEA 174
A H G + G + PG V H P A
Sbjct: 280 AAVYHSPGAAVYHSPGAAVYHSPGAAVYHSPGAAVFHSPGAA 321
Score = 28.5 bits (62), Expect = 5.2
Identities = 17/63 (26%), Positives = 25/63 (39%)
Query: 71 RRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARRHPANPQGRPG 130
R E R P+ H + H+P HSPE +V +P+ A PG
Sbjct: 825 RSPEAAVYRSPEAAVFHCPEAAVYHSPEAAVYHSPEASVFHSPEAAVYHSPEAAVFHSPG 884
Query: 131 ASL 133
A++
Sbjct: 885 AAV 887
Score = 28.1 bits (61), Expect = 6.8
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 81 PDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQ 114
P+ HS + H+P HSPE AV +P+
Sbjct: 78 PEAAVFHSPEAAVYHSPEAAVYHSPEAAVFHSPE 111
Score = 28.1 bits (61), Expect = 6.8
Identities = 16/53 (30%), Positives = 23/53 (43%)
Query: 81 PDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARRHPANPQGRPGASL 133
P+ HS + H+P HSP AV ++P R A PGA++
Sbjct: 875 PEAAVFHSPGAAVFHSPGAAVFHSPGAAVYRSPGAAVYRSPGAAVYRSPGAAV 927
Score = 27.7 bits (60), Expect = 8.9
Identities = 28/110 (25%), Positives = 37/110 (33%), Gaps = 6/110 (5%)
Query: 71 RRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARRHPANPQGRPG 130
R E R P+ H + H+P HSPE +V +P A PG
Sbjct: 220 RSPEAAVYRSPEAAVFHCPEAAVYHSPEAAVYHSPEASVFHSPGAAVFHSPGAAVYHSPG 279
Query: 131 ASL----GAGAISLRQRLEVH--GEGLLFRLGRPLPVGPGQDVEHRPTEA 174
A++ GA H G + G + PG V H P A
Sbjct: 280 AAVYHSPGAAVYHSPGAAVYHSPGAAVYHSPGAAVFHSPGAAVFHSPGAA 329
>gi|148491070 CTP synthase [Homo sapiens]
Length = 591
Score = 33.9 bits (76), Expect = 0.12
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 13/65 (20%)
Query: 4 HGVQALGPGGW-----LGKCRVLVWRNNSMPQSRGVALGPQLAATALS------DKAQSA 52
HGV L PGG+ GK + + W N GV LG QLA S A S
Sbjct: 365 HGV--LVPGGFGVRGTEGKIQAIAWARNQKKPFLGVCLGMQLAVVEFSRNVLGWQDANST 422
Query: 53 QYDPT 57
++DPT
Sbjct: 423 EFDPT 427
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 32.3 bits (72), Expect = 0.36
Identities = 35/108 (32%), Positives = 43/108 (39%), Gaps = 18/108 (16%)
Query: 113 PQQGQARRHPANPQGRPGASLGAGAISLRQRLEVHGE-GLLFRLGRPLPVG----PGQDV 167
P Q R P+GRPG G + GE G+ + G P P G PG D
Sbjct: 136 PPGSQGPRGERGPKGRPGPRGPQG---------IDGEPGVPGQPGAPGPPGHPSHPGPDG 186
Query: 168 EHRPTEA---GQQQAQHVGQDTLGLKCAILAPAGVEQQCLLQAQQGGA 212
RP A G + +G +GL + P G LQ QQGGA
Sbjct: 187 LSRPFSAQMAGLDEKSGLGSQ-VGLMPGSVGPVGPRGPQGLQGQQGGA 233
>gi|239749293 PREDICTED: hypothetical protein XP_002346984 [Homo
sapiens]
Length = 585
Score = 32.3 bits (72), Expect = 0.36
Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 11/80 (13%)
Query: 72 RKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARRHPAN-PQGRPG 130
R ++RR RP+P ++ P P L+ P PA P G G
Sbjct: 442 RAARRRRTRPEPGPARRG----------ARAEPPGPPTLQDPPASHLGSSPAQAPSGEAG 491
Query: 131 ASLGAGAISLRQRLEVHGEG 150
G GA+ R +V G G
Sbjct: 492 RRAGGGAVGARSPGDVLGSG 511
>gi|239743383 PREDICTED: hypothetical protein XP_002342846 [Homo
sapiens]
Length = 585
Score = 32.3 bits (72), Expect = 0.36
Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 11/80 (13%)
Query: 72 RKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARRHPAN-PQGRPG 130
R ++RR RP+P ++ P P L+ P PA P G G
Sbjct: 442 RAARRRRTRPEPGPARRG----------ARAEPPGPPTLQDPPASHLGSSPAQAPSGEAG 491
Query: 131 ASLGAGAISLRQRLEVHGEG 150
G GA+ R +V G G
Sbjct: 492 RRAGGGAVGARSPGDVLGSG 511
>gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]
Length = 380
Score = 32.0 bits (71), Expect = 0.47
Identities = 19/63 (30%), Positives = 26/63 (41%)
Query: 74 EKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARRHPANPQGRPGASL 133
E+Q+R++P P + R S P + P P P G P G P A+
Sbjct: 139 EQQKRQQPGPSEHIERRVSNAGGPPAPPAGGPPPPPGPPPPPGPPPPPGLPPSGVPAAAH 198
Query: 134 GAG 136
GAG
Sbjct: 199 GAG 201
>gi|29171711 melanoma antigen family B, 1 [Homo sapiens]
Length = 347
Score = 32.0 bits (71), Expect = 0.47
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 68 SHQRRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPE--PAVLKTPQQGQARRHPANP 125
S R +EK+R+ R + + HA A + P P + TP A P P
Sbjct: 7 SKLRAREKRRKAR-----EETQGLKVAHATAAEKEECPSSSPVLGDTPTSSPAAGIPQKP 61
Query: 126 QGRPGASLGAGAIS 139
QG P + A A+S
Sbjct: 62 QGAPPTTTAAAAVS 75
>gi|29171709 melanoma antigen family B, 1 [Homo sapiens]
Length = 347
Score = 32.0 bits (71), Expect = 0.47
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 68 SHQRRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPE--PAVLKTPQQGQARRHPANP 125
S R +EK+R+ R + + HA A + P P + TP A P P
Sbjct: 7 SKLRAREKRRKAR-----EETQGLKVAHATAAEKEECPSSSPVLGDTPTSSPAAGIPQKP 61
Query: 126 QGRPGASLGAGAIS 139
QG P + A A+S
Sbjct: 62 QGAPPTTTAAAAVS 75
>gi|29171707 melanoma antigen family B, 1 [Homo sapiens]
Length = 347
Score = 32.0 bits (71), Expect = 0.47
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 68 SHQRRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPE--PAVLKTPQQGQARRHPANP 125
S R +EK+R+ R + + HA A + P P + TP A P P
Sbjct: 7 SKLRAREKRRKAR-----EETQGLKVAHATAAEKEECPSSSPVLGDTPTSSPAAGIPQKP 61
Query: 126 QGRPGASLGAGAIS 139
QG P + A A+S
Sbjct: 62 QGAPPTTTAAAAVS 75
>gi|191252814 RIMS binding protein 3B [Homo sapiens]
Length = 1639
Score = 31.6 bits (70), Expect = 0.62
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 66 CLSHQRRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARRHPANP 125
CL + + ++ RR P+P HS + CQ H P A+ P + P
Sbjct: 1387 CLDLRGTERREERREPEP---HSRQGQALGVKRGCQLHEPSSALCPAPSAKVIKMPRGGP 1443
Query: 126 QGRPGASLGAGA 137
Q LG GA
Sbjct: 1444 Q-----QLGTGA 1450
>gi|191252806 RIMS binding protein 3C [Homo sapiens]
Length = 1639
Score = 31.6 bits (70), Expect = 0.62
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 66 CLSHQRRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARRHPANP 125
CL + + ++ RR P+P HS + CQ H P A+ P + P
Sbjct: 1387 CLDLRGTERREERREPEP---HSRQGQALGVKRGCQLHEPSSALCPAPSAKVIKMPRGGP 1443
Query: 126 QGRPGASLGAGA 137
Q LG GA
Sbjct: 1444 Q-----QLGTGA 1450
>gi|239757324 PREDICTED: hypothetical protein XP_002345241 [Homo
sapiens]
Length = 582
Score = 31.6 bits (70), Expect = 0.62
Identities = 49/199 (24%), Positives = 69/199 (34%), Gaps = 36/199 (18%)
Query: 40 LAATALSDKAQSAQYDPTQICQKLTFCLSHQRRKEKQRRRRPDPRKQHSNRCSCTHAPAC 99
+ A KA + P Q+ H + +Q P +K H N C+ A +
Sbjct: 22 IEAAVSEGKAHDEGFSPQGPGQECGVRGRHSEHQPQQVVGCPADKKPHHNGCAQRPAASG 81
Query: 100 CQSHSPEPAVLKTPQQGQARRHPANPQGRPGAS---LGAGAISLRQRLEVHGEGLLFRLG 156
C PA T G + P + +P S LGAG ++ G +L L
Sbjct: 82 C------PAQEGTVAAGHGHQGPQEAKKKPDGSHRILGAGGAAVVHHTLQPGWEVL--LV 133
Query: 157 RPLPVGPGQDVEHRPTEAGQQQAQHVGQDTLGLKCAIL-------------APAGVEQQC 203
+P G G G+QQ Q G T L A A G E
Sbjct: 134 QPAVDGGGH---------GEQQGQCPGCPTGHLHPARPLNRRPPGRPESQEAEVGTES-- 182
Query: 204 LLQAQQGGAHGKEEDGSTK 222
Q Q G HG+++DG +
Sbjct: 183 -CQEQDAGIHGQQDDGGQR 200
>gi|239751831 PREDICTED: hypothetical protein XP_002348009 [Homo
sapiens]
Length = 589
Score = 31.6 bits (70), Expect = 0.62
Identities = 49/199 (24%), Positives = 69/199 (34%), Gaps = 36/199 (18%)
Query: 40 LAATALSDKAQSAQYDPTQICQKLTFCLSHQRRKEKQRRRRPDPRKQHSNRCSCTHAPAC 99
+ A KA + P Q+ H + +Q P +K H N C+ A +
Sbjct: 29 IEAAVSEGKAHDEGFSPQGPGQECGVRGRHSEHQPQQVVGCPADKKPHHNGCAQRPAASG 88
Query: 100 CQSHSPEPAVLKTPQQGQARRHPANPQGRPGAS---LGAGAISLRQRLEVHGEGLLFRLG 156
C PA T G + P + +P S LGAG ++ G +L L
Sbjct: 89 C------PAQEGTVAAGHGHQGPQEAKKKPDGSHRILGAGGAAVVHHTLQPGWEVL--LV 140
Query: 157 RPLPVGPGQDVEHRPTEAGQQQAQHVGQDTLGLKCAIL-------------APAGVEQQC 203
+P G G G+QQ Q G T L A A G E
Sbjct: 141 QPAVDGGGH---------GEQQGQCPGCPTGHLHPARPLNRRPPGRPESQEAEVGTES-- 189
Query: 204 LLQAQQGGAHGKEEDGSTK 222
Q Q G HG+++DG +
Sbjct: 190 -CQEQDAGIHGQQDDGGQR 207
>gi|239746324 PREDICTED: hypothetical protein XP_002343730 [Homo
sapiens]
Length = 329
Score = 31.6 bits (70), Expect = 0.62
Identities = 49/199 (24%), Positives = 69/199 (34%), Gaps = 36/199 (18%)
Query: 40 LAATALSDKAQSAQYDPTQICQKLTFCLSHQRRKEKQRRRRPDPRKQHSNRCSCTHAPAC 99
+ A KA + P Q+ H + +Q P +K H N C+ A +
Sbjct: 29 IEAAVSEGKAHDEGFSPQGPGQECGVRGRHSEHQPQQVVGCPADKKPHHNGCAQRPAASG 88
Query: 100 CQSHSPEPAVLKTPQQGQARRHPANPQGRPGAS---LGAGAISLRQRLEVHGEGLLFRLG 156
C PA T G + P + +P S LGAG ++ G +L L
Sbjct: 89 C------PAQEGTVAAGHGHQGPQEAKKKPDGSHRILGAGGAAVVHHTLQPGWEVL--LV 140
Query: 157 RPLPVGPGQDVEHRPTEAGQQQAQHVGQDTLGLKCAIL-------------APAGVEQQC 203
+P G G G+QQ Q G T L A A G E
Sbjct: 141 QPAVDGGGH---------GEQQGQCPGCPTGHLHPARPLNRRPPGRPESQEAEVGTES-- 189
Query: 204 LLQAQQGGAHGKEEDGSTK 222
Q Q G HG+++DG +
Sbjct: 190 -CQEQDAGIHGQQDDGGQR 207
>gi|215820619 zinc finger protein 646 [Homo sapiens]
Length = 1832
Score = 31.2 bits (69), Expect = 0.81
Identities = 31/110 (28%), Positives = 43/110 (39%), Gaps = 14/110 (12%)
Query: 69 HQRRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLK--TPQQGQARRHPANPQ 126
HQR + RRRR ++ + RC A C P L+ + + R PAN Q
Sbjct: 1344 HQRLHSENRRRRAGRSRRTAVRC------ALCGRSFPGRGSLERHLREHEETEREPANGQ 1397
Query: 127 GRPGASLGAGAISLRQRLEVHGEGLLFRLGRPLPVGPGQDVEHRPTEAGQ 176
G G + + +GL +LG PV +D RP E Q
Sbjct: 1398 G------GLDGTAASEANLTGSQGLETQLGGAEPVPHLEDGVPRPGERSQ 1441
>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
Length = 715
Score = 30.8 bits (68), Expect = 1.1
Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 69 HQRRKEKQRRRRPDPRKQHSNRCSCTHA--PACCQSHSPEPAVLKTPQQGQARRHPANPQ 126
HQRR R R P R S++ S + A P ++H P + + R + +
Sbjct: 112 HQRRGTHSRGRTPGRRGSRSSKRSPSRASTPGRIRTHGARPGM-----ASRVRTPTSQQK 166
Query: 127 GRPGASLGAGAISLRQRLEVHGEGLLFRLGRPLPVGPG 164
G G S G S R+R + L + RP P G G
Sbjct: 167 GSRGKSYGRPRTSNRERSDSQPRNLSKKSYRP-PGGSG 203
>gi|170932471 hypothetical protein LOC79703 [Homo sapiens]
Length = 677
Score = 30.8 bits (68), Expect = 1.1
Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 16/104 (15%)
Query: 47 DKAQSAQYDPTQICQKLTFCLSHQRRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPE 106
D AQ + P +L S Q E +R +R PR + AP SP
Sbjct: 564 DSAQGTEDAPDNSSLELLADTSGQA--ENKRLKRGSPRIEEMRALRSARAP------SPS 615
Query: 107 PAVLKTPQQGQARRHPANPQGRP-----GASLGAGAISLRQRLE 145
A P++ +A P P+GR G +L G SL RLE
Sbjct: 616 EA---APRRPEATAAPLTPRGREHREAHGRALAPGRASLGSRLE 656
>gi|58218966 hypothetical protein LOC339201 [Homo sapiens]
Length = 193
Score = 30.8 bits (68), Expect = 1.1
Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 11/75 (14%)
Query: 70 QRRKEKQRRRRPDPRKQHSNRCSCTHAPACCQ--SHSPEPAVLKTPQQGQA--------R 119
QR RP PR + RC+ AC + H +P PQ G A +
Sbjct: 52 QRGPRNAAAARPGPRSRWHKRCAAA-CGACARPPGHQLQPPGAGAPQPGVACSYLGPRPQ 110
Query: 120 RHPANPQGRPGASLG 134
R P + Q RPG G
Sbjct: 111 RTPCSAQSRPGWCAG 125
>gi|23397666 transcriptional co-repressor Sin3A [Homo sapiens]
Length = 1273
Score = 30.4 bits (67), Expect = 1.4
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 80 RPDPRKQHSNRCSCTHAPACCQ-SHSPEPAVLKTPQQGQARRHPANPQGRP 129
+P P QH ++ S APA Q + P PA + P Q QA PA+ Q P
Sbjct: 219 QPQPPPQHPSQPSAQSAPAPAQPAPQPPPAKVSKPSQLQAHT-PASQQTPP 268
>gi|223941785 transcriptional co-repressor Sin3A [Homo sapiens]
Length = 1273
Score = 30.4 bits (67), Expect = 1.4
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 80 RPDPRKQHSNRCSCTHAPACCQ-SHSPEPAVLKTPQQGQARRHPANPQGRP 129
+P P QH ++ S APA Q + P PA + P Q QA PA+ Q P
Sbjct: 219 QPQPPPQHPSQPSAQSAPAPAQPAPQPPPAKVSKPSQLQAHT-PASQQTPP 268
>gi|223941782 transcriptional co-repressor Sin3A [Homo sapiens]
Length = 1273
Score = 30.4 bits (67), Expect = 1.4
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 80 RPDPRKQHSNRCSCTHAPACCQ-SHSPEPAVLKTPQQGQARRHPANPQGRP 129
+P P QH ++ S APA Q + P PA + P Q QA PA+ Q P
Sbjct: 219 QPQPPPQHPSQPSAQSAPAPAQPAPQPPPAKVSKPSQLQAHT-PASQQTPP 268
>gi|32479521 dishevelled 1 [Homo sapiens]
Length = 670
Score = 30.4 bits (67), Expect = 1.4
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 16/82 (19%)
Query: 24 RNNSMPQS---RGVALGPQLAATALSDKAQSAQY-------------DPTQICQKLTFCL 67
R N P+ R V L P A+TALS + +S+ + T+
Sbjct: 158 RTNGHPRGDRRRDVGLPPDSASTALSSELESSSFVDSDEDGSTSRLSSSTEQSTSSRLIR 217
Query: 68 SHQRRKEKQRRRRPDPRKQHSN 89
H+RR+ KQR R+ D S+
Sbjct: 218 KHKRRRRKQRLRQADRASSFSS 239
>gi|19718731 bromodomain-containing protein 4 isoform long [Homo
sapiens]
Length = 1362
Score = 30.4 bits (67), Expect = 1.4
Identities = 14/51 (27%), Positives = 30/51 (58%)
Query: 70 QRRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARR 120
+RR+E+Q+++R + ++Q + + A A Q+ S +P + Q+ AR+
Sbjct: 1280 RRRQEQQQQQRQEQQQQQQQQAAAVAAAATPQAQSSQPQSMLDQQRELARK 1330
>gi|153792195 DKFZP434H0735 protein [Homo sapiens]
Length = 1639
Score = 30.4 bits (67), Expect = 1.4
Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Query: 66 CLSHQRRKEKQRRRRPDPRKQHSNRCSCTHAPACCQSHSPEPAVLKTPQQGQARRHPANP 125
CL + ++ RR P+P HS + CQ H P A+ P + P
Sbjct: 1387 CLDLWGTERREERREPEP---HSRQGQALGVKRGCQLHEPSSALCPAPSAKVIKMPRGGP 1443
Query: 126 QGRPGASLGAGA 137
Q LG GA
Sbjct: 1444 Q-----QLGTGA 1450
>gi|239754887 PREDICTED: hypothetical protein XP_002346152 [Homo
sapiens]
Length = 517
Score = 30.0 bits (66), Expect = 1.8
Identities = 46/183 (25%), Positives = 61/183 (33%), Gaps = 45/183 (24%)
Query: 35 ALGPQLAATALSDKAQSAQYDPTQICQKLT-------------------FCLSHQRRKEK 75
ALG Q LS Q A P Q L CL H+ +
Sbjct: 282 ALGAQRGRLRLSQAVQEAALHPLQPLHLLAPPRPVLVVGVVLHVLHAQPLCLLHEGPLLR 341
Query: 76 QRRRRPDPRKQHSNRCSCTHAPACCQSHS----PEPAVLKTPQQGQARRHPANPQGRPGA 131
QR+R P R +CTH +P L ++ P + G+
Sbjct: 342 QRQRLP--------RLACTHLAQLGVVQVWILLRQPLALVLSPHHESVHRPPDTGLALGS 393
Query: 132 SLGAGAIS-LRQRLEVHGEGLLFRLGRPLPVGPGQDVEHRPTEAGQQQAQHVGQDTLGLK 190
+ G G S +R+RL +H L +GPG AG Q H GQ LGL
Sbjct: 394 ARGPGRCSAVRRRLALH----LHVPDGAQRLGPG---------AGAQPGHHRGQRALGLA 440
Query: 191 CAI 193
+
Sbjct: 441 LVV 443
>gi|239749426 PREDICTED: hypothetical protein XP_002347042 [Homo
sapiens]
Length = 517
Score = 30.0 bits (66), Expect = 1.8
Identities = 46/183 (25%), Positives = 61/183 (33%), Gaps = 45/183 (24%)
Query: 35 ALGPQLAATALSDKAQSAQYDPTQICQKLT-------------------FCLSHQRRKEK 75
ALG Q LS Q A P Q L CL H+ +
Sbjct: 282 ALGAQRGRLRLSQAVQEAALHPLQPLHLLAPPRPVLVVGVVLHVLHAQPLCLLHEGPLLR 341
Query: 76 QRRRRPDPRKQHSNRCSCTHAPACCQSHS----PEPAVLKTPQQGQARRHPANPQGRPGA 131
QR+R P R +CTH +P L ++ P + G+
Sbjct: 342 QRQRLP--------RLACTHLAQLGVVQVWILLRQPLALVLSPHHESVHRPPDTGLALGS 393
Query: 132 SLGAGAIS-LRQRLEVHGEGLLFRLGRPLPVGPGQDVEHRPTEAGQQQAQHVGQDTLGLK 190
+ G G S +R+RL +H L +GPG AG Q H GQ LGL
Sbjct: 394 ARGPGRCSAVRRRLALH----LHVPDGAQRLGPG---------AGAQPGHHRGQRALGLA 440
Query: 191 CAI 193
+
Sbjct: 441 LVV 443
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,929,871
Number of Sequences: 37866
Number of extensions: 665522
Number of successful extensions: 2599
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 2474
Number of HSP's gapped (non-prelim): 184
length of query: 235
length of database: 18,247,518
effective HSP length: 99
effective length of query: 136
effective length of database: 14,498,784
effective search space: 1971834624
effective search space used: 1971834624
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.