Guide to the Human Genome
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Name: LOC100289951 Sequence: fasta or formatted (517aa) NCBI GI: 239749426
Description:

PREDICTED: hypothetical protein XP_002347042

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.3         69           3
 C cysteine            1.5          8           1
 D aspartate           1.4          7           1
 E glutamate           4.3         22           2
 F phenylalanine       0.4          2           1
 G glycine            13.3         69           2
 H histidine           5.8         30           2
 I isoleucine          1.4          7           1
 K lysine              1.0          5           1
 L leucine            13.0         67           2
 M methionine          0.4          2           1
 N asparagine          1.0          5           1
 P proline             6.6         34           2
 Q glutamine           5.0         26           2
 R arginine           13.2         68           3
 S serine              4.3         22           2
 T threonine           2.1         11           1
 V valine             10.8         56           2
 W tryptophan          1.0          5           1
 Y tyrosine            0.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347042 
LOC100287492          1.000   PREDICTED: hypothetical protein XP_002342893 
LOC100291782          0.999   PREDICTED: hypothetical protein XP_002346152 
LOC100129098          0.128   PREDICTED: hypothetical protein 
LOC100129098          0.127   PREDICTED: hypothetical protein 
LOC100129098          0.087   PREDICTED: hypothetical protein 
NKX1-2                0.019   PREDICTED: NK1 homeobox 2 
NKX1-2                0.019   PREDICTED: NK1 homeobox 2 
NKX1-2                0.019   PREDICTED: NK1 homeobox 2 
LOC728767             0.017   PREDICTED: hypothetical protein 
LOC728767             0.017   PREDICTED: hypothetical protein 
NKX1-2                0.017   NK1 homeobox 2 
LOC100289661          0.014   PREDICTED: hypothetical protein 
LOC100288030          0.014   PREDICTED: hypothetical protein XP_002343812 
LOC100289661          0.014   PREDICTED: hypothetical protein XP_002343723 
LOC100291624          0.014   PREDICTED: hypothetical protein XP_002345876 
LOC100289712          0.014   PREDICTED: hypothetical protein XP_002346761 
LOC100287455          0.014   PREDICTED: hypothetical protein XP_002342583 
LIX1L                 0.013   Lix1 homolog (mouse) like 
CITED4                0.012   Cbp/p300-interacting transactivator, with Glu/Asp-ri...
LOC100287994          0.011   PREDICTED: hypothetical protein 
LOC100287994          0.011   PREDICTED: hypothetical protein XP_002342988 
COL4A3                0.011   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.011   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.011   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.011   alpha 3 type IV collagen isoform 1 precursor 
NDFIP2                0.010   Nedd4 family interacting protein 2 isoform 2 
NDFIP2                0.010   Nedd4 family interacting protein 2 isoform 1 
DBP                   0.010   D site of albumin promoter (albumin D-box) binding p...
LOC100287587          0.010   PREDICTED: hypothetical protein XP_002343392 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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