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Search of human proteins with 239744665
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744665 PREDICTED: hypothetical protein XP_002343232 [Homo
sapiens]
(82 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755857 PREDICTED: hypothetical protein [Homo sapiens] 171 2e-43
gi|239750361 PREDICTED: hypothetical protein XP_002347406 [Homo ... 171 2e-43
gi|239744665 PREDICTED: hypothetical protein XP_002343232 [Homo ... 171 2e-43
gi|41152235 ubiquitin specific protease 51 [Homo sapiens] 38 0.002
gi|31442420 shroom family member 1 [Homo sapiens] 38 0.002
gi|239747812 PREDICTED: ankyrin repeat domain 36 [Homo sapiens] 35 0.017
gi|197276670 spermatogenesis and centriole associated 1 isoform ... 34 0.029
gi|197276668 spermatogenesis and centriole associated 1 isoform ... 34 0.029
gi|203098098 shroom family member 3 protein [Homo sapiens] 33 0.037
gi|24308265 methyltransferase like 14 [Homo sapiens] 33 0.064
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 32 0.083
gi|239753335 PREDICTED: hypothetical protein [Homo sapiens] 31 0.19
gi|154277120 spectrin repeat containing, nuclear envelope 1 isof... 31 0.19
gi|154277118 spectrin repeat containing, nuclear envelope 1 isof... 31 0.19
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo... 31 0.19
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof... 31 0.19
gi|27262645 ataxin 2 related protein isoform B [Homo sapiens] 31 0.19
gi|27262653 ataxin 2 related protein isoform E [Homo sapiens] 31 0.19
gi|27262649 ataxin 2 related protein isoform C [Homo sapiens] 31 0.19
gi|27262647 ataxin 2 related protein isoform A [Homo sapiens] 31 0.19
gi|27262651 ataxin 2 related protein isoform D [Homo sapiens] 31 0.19
gi|169214061 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|169214437 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|169213353 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|239753271 PREDICTED: similar to ankyrin repeat domain 36 [Hom... 30 0.32
gi|13376611 zinc finger protein 703 [Homo sapiens] 30 0.41
gi|169173306 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|239753158 PREDICTED: hypothetical protein XP_002345577 [Homo ... 30 0.41
gi|169172508 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|239747728 PREDICTED: hypothetical protein XP_002348255 [Homo ... 30 0.41
>gi|239755857 PREDICTED: hypothetical protein [Homo sapiens]
Length = 82
Score = 171 bits (432), Expect = 2e-43
Identities = 82/82 (100%), Positives = 82/82 (100%)
Query: 1 MPPSTSSWSSVRSSTTLGLRVPAATPKTPRQPPSTSSSSAGLQEGRWRGLPRRSRPGARG 60
MPPSTSSWSSVRSSTTLGLRVPAATPKTPRQPPSTSSSSAGLQEGRWRGLPRRSRPGARG
Sbjct: 1 MPPSTSSWSSVRSSTTLGLRVPAATPKTPRQPPSTSSSSAGLQEGRWRGLPRRSRPGARG 60
Query: 61 RSRIADRLRGDPGTGRDGGTHR 82
RSRIADRLRGDPGTGRDGGTHR
Sbjct: 61 RSRIADRLRGDPGTGRDGGTHR 82
>gi|239750361 PREDICTED: hypothetical protein XP_002347406 [Homo
sapiens]
Length = 82
Score = 171 bits (432), Expect = 2e-43
Identities = 82/82 (100%), Positives = 82/82 (100%)
Query: 1 MPPSTSSWSSVRSSTTLGLRVPAATPKTPRQPPSTSSSSAGLQEGRWRGLPRRSRPGARG 60
MPPSTSSWSSVRSSTTLGLRVPAATPKTPRQPPSTSSSSAGLQEGRWRGLPRRSRPGARG
Sbjct: 1 MPPSTSSWSSVRSSTTLGLRVPAATPKTPRQPPSTSSSSAGLQEGRWRGLPRRSRPGARG 60
Query: 61 RSRIADRLRGDPGTGRDGGTHR 82
RSRIADRLRGDPGTGRDGGTHR
Sbjct: 61 RSRIADRLRGDPGTGRDGGTHR 82
>gi|239744665 PREDICTED: hypothetical protein XP_002343232 [Homo
sapiens]
Length = 82
Score = 171 bits (432), Expect = 2e-43
Identities = 82/82 (100%), Positives = 82/82 (100%)
Query: 1 MPPSTSSWSSVRSSTTLGLRVPAATPKTPRQPPSTSSSSAGLQEGRWRGLPRRSRPGARG 60
MPPSTSSWSSVRSSTTLGLRVPAATPKTPRQPPSTSSSSAGLQEGRWRGLPRRSRPGARG
Sbjct: 1 MPPSTSSWSSVRSSTTLGLRVPAATPKTPRQPPSTSSSSAGLQEGRWRGLPRRSRPGARG 60
Query: 61 RSRIADRLRGDPGTGRDGGTHR 82
RSRIADRLRGDPGTGRDGGTHR
Sbjct: 61 RSRIADRLRGDPGTGRDGGTHR 82
>gi|41152235 ubiquitin specific protease 51 [Homo sapiens]
Length = 711
Score = 38.1 bits (87), Expect = 0.002
Identities = 27/69 (39%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 12 RSSTTLGLRVPAATPKTPRQPPSTSSSSAGLQEGRWRGLPRRSRPGARGRSRIADRLRGD 71
RS + GL P P P PP A WRG RRSRPG+R ++R + GD
Sbjct: 113 RSRSQPGLSAPPPPPARPPPPPPPPPPPAPRPRA-WRGSRRRSRPGSRPQTRRS--CSGD 169
Query: 72 -PGTGRDGG 79
G+G GG
Sbjct: 170 LDGSGDPGG 178
>gi|31442420 shroom family member 1 [Homo sapiens]
Length = 847
Score = 38.1 bits (87), Expect = 0.002
Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 12/78 (15%)
Query: 17 LGLRVPAAT-PKTPRQPPSTSSSSAGLQEGRWRGLPRRSR---PGARGRSRIADRLR--- 69
L + +PA P P +PP+T SA L G P RSR PG GR +A++ R
Sbjct: 163 LRMSLPARLRPTVPARPPATHPRSASLSHPGGEGEPARSRAPAPGTAGRGPLANQQRKWC 222
Query: 70 -GDPG----TGRDGGTHR 82
+PG GR GG R
Sbjct: 223 FSEPGKLDRVGRGGGPAR 240
>gi|239747812 PREDICTED: ankyrin repeat domain 36 [Homo sapiens]
Length = 753
Score = 34.7 bits (78), Expect = 0.017
Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Query: 1 MPPSTSSWSSVRSSTTLGLRVPAATPKTPRQPPSTSSSSAGLQEGRWRGLPRRSRPGARG 60
+PP ++R LR A P+ PRQPP LQ RW L + P +R
Sbjct: 142 LPPGVQEARTLRPDGG-ALRAQEAIPREPRQPPPEPELQCRLQVVRWLQLWQPRIPSSRL 200
Query: 61 RSRIADRLRGDP----GTGRDGGTHR 82
AD GD G G GGT R
Sbjct: 201 APISADP-GGDAVAKWGCGPSGGTRR 225
>gi|197276670 spermatogenesis and centriole associated 1 isoform 2
[Homo sapiens]
Length = 441
Score = 33.9 bits (76), Expect = 0.029
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 9 SSVRSSTTLGLRVPAATPKTPRQPPSTSSSSAGLQEGRWRGLPRRSRPGARGRSRIADRL 68
S + +S T L VP P PP TSSS A + + R PR + P + + +L
Sbjct: 366 SRMHNSPTQNLPVPHCPPHNAHSPPRTSSSPASVNDSRG---PRTTEPSTKSMMEVERKL 422
>gi|197276668 spermatogenesis and centriole associated 1 isoform 1
[Homo sapiens]
Length = 591
Score = 33.9 bits (76), Expect = 0.029
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 9 SSVRSSTTLGLRVPAATPKTPRQPPSTSSSSAGLQEGRWRGLPRRSRPGARGRSRIADRL 68
S + +S T L VP P PP TSSS A + + R PR + P + + +L
Sbjct: 366 SRMHNSPTQNLPVPHCPPHNAHSPPRTSSSPASVNDSRG---PRTTEPSTKSMMEVERKL 422
>gi|203098098 shroom family member 3 protein [Homo sapiens]
Length = 1996
Score = 33.5 bits (75), Expect = 0.037
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 2 PPSTSSWSSVRSSTTLGLRVP----AATPKTPRQPPSTSSSSAGLQEGRWRGLPRRSRPG 57
P ++ SW SS +GLR P +A+P TPR+ S + + L R +P +R G
Sbjct: 951 PVASRSWRPRPSSAHVGLRSPEASASASPHTPRERHSVTPAEGDLA----RPVPPAARRG 1006
Query: 58 ARGR 61
AR R
Sbjct: 1007 ARRR 1010
Score = 28.9 bits (63), Expect = 0.92
Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 23/81 (28%)
Query: 4 STSSWSSVRSSTTLGLR----VPAATPKTPRQPPSTSSSSAGLQEGRWRGLPRRSRPGAR 59
S SS SS+R + R +PA +T + P SSS AG
Sbjct: 1135 SASSLSSLREPSLQPRREATLLPATVAETQQAPRDRSSSFAG------------------ 1176
Query: 60 GRSRIADRLRGDPGTGRDGGT 80
GR R+ +R RGD +G +GGT
Sbjct: 1177 GR-RLGERRRGDLLSGANGGT 1196
>gi|24308265 methyltransferase like 14 [Homo sapiens]
Length = 456
Score = 32.7 bits (73), Expect = 0.064
Identities = 22/56 (39%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 29 PRQPPSTSSSSAGLQEGRWRGLPRRSRPGARGRSRIADRLRGDPG--TGRDGGTHR 82
P+ PP S S G G RG R RGR R RG+ G G GG HR
Sbjct: 397 PKSPPPKSKSDRG--GGAPRGGGRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHR 450
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 32.3 bits (72), Expect = 0.083
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 1 MPPSTSSWSSVRSSTTLGLRVPAATPKTPRQPPSTSSSSAGLQEGRWRGLPRRSRPGA 58
+ P + + S+ ++ V A P+TP + S+S+SS +++G R RRSR G+
Sbjct: 1386 LSPDAVEKAGMSSNQSISSPVLDAVPRTPSRERSSSASSPEMKDGLPRTPSRRSRSGS 1443
Score = 27.3 bits (59), Expect = 2.7
Identities = 20/64 (31%), Positives = 24/64 (37%)
Query: 7 SWSSVRSSTTLGLRVPAATPKTPRQPPSTSSSSAGLQEGRWRGLPRRSRPGARGRSRIAD 66
S S R S R PA ++ + P+ S R G R P RGRSR
Sbjct: 637 SRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRT 696
Query: 67 RLRG 70
RG
Sbjct: 697 PRRG 700
>gi|239753335 PREDICTED: hypothetical protein [Homo sapiens]
Length = 113
Score = 31.2 bits (69), Expect = 0.19
Identities = 20/53 (37%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 27 KTPRQPPSTSSSSAGLQEGRWRGLPRRSRPGARGRSRIADRLRGDPGTGRDGG 79
+ P S + G G WR PRR RPG S A RG GR GG
Sbjct: 17 RAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPA---RGAAAWGRSGG 66
>gi|154277120 spectrin repeat containing, nuclear envelope 1 isoform
3 [Homo sapiens]
Length = 982
Score = 31.2 bits (69), Expect = 0.19
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 6 SSWSSVRSSTTLGLRVPAATPKTPRQPPSTSSSSAGLQEGRWRGLPRRSRPGARGRSRIA 65
SSWSS T G P + TP + + + Q G P S P +R +
Sbjct: 855 SSWSSADELDTSGSVSPTSGRSTPNRQKTPRGKCSLSQPG-----PSVSSPHSRSTKGGS 909
Query: 66 DRLRGDPGTGRDG 78
D +PG GR G
Sbjct: 910 DSSLSEPGPGRSG 922
>gi|154277118 spectrin repeat containing, nuclear envelope 1 isoform 4
[Homo sapiens]
Length = 3321
Score = 31.2 bits (69), Expect = 0.19
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 6 SSWSSVRSSTTLGLRVPAATPKTPRQPPSTSSSSAGLQEGRWRGLPRRSRPGARGRSRIA 65
SSWSS T G P + TP + + + Q G P S P +R +
Sbjct: 3194 SSWSSADELDTSGSVSPTSGRSTPNRQKTPRGKCSLSQPG-----PSVSSPHSRSTKGGS 3248
Query: 66 DRLRGDPGTGRDG 78
D +PG GR G
Sbjct: 3249 DSSLSEPGPGRSG 3261
>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
[Homo sapiens]
Length = 8749
Score = 31.2 bits (69), Expect = 0.19
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 6 SSWSSVRSSTTLGLRVPAATPKTPRQPPSTSSSSAGLQEGRWRGLPRRSRPGARGRSRIA 65
SSWSS T G P + TP + + + Q G P S P +R +
Sbjct: 8622 SSWSSADELDTSGSVSPTSGRSTPNRQKTPRGKCSLSQPG-----PSVSSPHSRSTKGGS 8676
Query: 66 DRLRGDPGTGRDG 78
D +PG GR G
Sbjct: 8677 DSSLSEPGPGRSG 8689
>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1
[Homo sapiens]
Length = 8797
Score = 31.2 bits (69), Expect = 0.19
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 6 SSWSSVRSSTTLGLRVPAATPKTPRQPPSTSSSSAGLQEGRWRGLPRRSRPGARGRSRIA 65
SSWSS T G P + TP + + + Q G P S P +R +
Sbjct: 8670 SSWSSADELDTSGSVSPTSGRSTPNRQKTPRGKCSLSQPG-----PSVSSPHSRSTKGGS 8724
Query: 66 DRLRGDPGTGRDG 78
D +PG GR G
Sbjct: 8725 DSSLSEPGPGRSG 8737
>gi|27262645 ataxin 2 related protein isoform B [Homo sapiens]
Length = 1062
Score = 31.2 bits (69), Expect = 0.19
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 30 RQPPSTSSSSAGLQEGRWRGLPRRSRPGARGRSRIADRLRGDPG 73
RQ S S +EG++ LP+R R G RG R + G PG
Sbjct: 332 RQGSGRESPSLASREGKYIPLPQRVREGPRGGVRCSSSRGGRPG 375
>gi|27262653 ataxin 2 related protein isoform E [Homo sapiens]
Length = 1044
Score = 31.2 bits (69), Expect = 0.19
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 30 RQPPSTSSSSAGLQEGRWRGLPRRSRPGARGRSRIADRLRGDPG 73
RQ S S +EG++ LP+R R G RG R + G PG
Sbjct: 332 RQGSGRESPSLASREGKYIPLPQRVREGPRGGVRCSSSRGGRPG 375
>gi|27262649 ataxin 2 related protein isoform C [Homo sapiens]
Length = 1097
Score = 31.2 bits (69), Expect = 0.19
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 30 RQPPSTSSSSAGLQEGRWRGLPRRSRPGARGRSRIADRLRGDPG 73
RQ S S +EG++ LP+R R G RG R + G PG
Sbjct: 332 RQGSGRESPSLASREGKYIPLPQRVREGPRGGVRCSSSRGGRPG 375
>gi|27262647 ataxin 2 related protein isoform A [Homo sapiens]
Length = 1075
Score = 31.2 bits (69), Expect = 0.19
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 30 RQPPSTSSSSAGLQEGRWRGLPRRSRPGARGRSRIADRLRGDPG 73
RQ S S +EG++ LP+R R G RG R + G PG
Sbjct: 332 RQGSGRESPSLASREGKYIPLPQRVREGPRGGVRCSSSRGGRPG 375
>gi|27262651 ataxin 2 related protein isoform D [Homo sapiens]
Length = 1044
Score = 31.2 bits (69), Expect = 0.19
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 30 RQPPSTSSSSAGLQEGRWRGLPRRSRPGARGRSRIADRLRGDPG 73
RQ S S +EG++ LP+R R G RG R + G PG
Sbjct: 332 RQGSGRESPSLASREGKYIPLPQRVREGPRGGVRCSSSRGGRPG 375
>gi|169214061 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 30.8 bits (68), Expect = 0.24
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 10/64 (15%)
Query: 22 PAATPKTPR---QPPSTSSSSAG-------LQEGRWRGLPRRSRPGARGRSRIADRLRGD 71
P TP P PPS ++++A L G+WR LPRR A G + R
Sbjct: 194 PTLTPPLPAGSPDPPSPAATAAPQPEQRPHLSRGQWRLLPRRRPERAAGSAGSCSSRRAL 253
Query: 72 PGTG 75
P +G
Sbjct: 254 PASG 257
>gi|169214437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 30.8 bits (68), Expect = 0.24
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 10/64 (15%)
Query: 22 PAATPKTPR---QPPSTSSSSAG-------LQEGRWRGLPRRSRPGARGRSRIADRLRGD 71
P TP P PPS ++++A L G+WR LPRR A G + R
Sbjct: 194 PTLTPPLPAGSPDPPSPAATAAPQPEQRPHLSRGQWRLLPRRRPERAAGSAGSCSSRRAL 253
Query: 72 PGTG 75
P +G
Sbjct: 254 PASG 257
>gi|169213353 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 30.8 bits (68), Expect = 0.24
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 10/64 (15%)
Query: 22 PAATPKTPR---QPPSTSSSSAG-------LQEGRWRGLPRRSRPGARGRSRIADRLRGD 71
P TP P PPS ++++A L G+WR LPRR A G + R
Sbjct: 194 PTLTPPLPAGSPDPPSPAATAAPQPEQRPHLSRGQWRLLPRRRPERAAGSAGSCSSRRAL 253
Query: 72 PGTG 75
P +G
Sbjct: 254 PASG 257
>gi|239753271 PREDICTED: similar to ankyrin repeat domain 36 [Homo
sapiens]
Length = 501
Score = 30.4 bits (67), Expect = 0.32
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 19 LRVPAATPKTPRQPPSTSSSSAGLQEGRWRGLPRRSRPGARGRSRIADRLRGDPG 73
LR A P+ PRQPP LQ RW L + P SR+A + DPG
Sbjct: 349 LRAQEAIPREPRQPPPEPELQCRLQVVRWLQLWQPRIPS----SRLAP-ISADPG 398
>gi|13376611 zinc finger protein 703 [Homo sapiens]
Length = 590
Score = 30.0 bits (66), Expect = 0.41
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 4 STSSWSSVRSSTTLGLRVPAAT--PKTPRQPPSTSSSSAGLQEGRWRGLPRRS 54
STSS SS G RVP+A P P P ++SSS+ G G P S
Sbjct: 177 STSSSSSSSPGDKAGFRVPSAACPPFPPHGAPVSASSSSSSPGGSRGGSPHHS 229
>gi|169173306 PREDICTED: hypothetical protein [Homo sapiens]
Length = 281
Score = 30.0 bits (66), Expect = 0.41
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 18 GLRVPAATPKTPRQPPSTSSSSAGLQEGRWRG---LPRRSRPGARGRSRIADRLRGDPGT 74
G+ AA P T R PP +SS E W RR P R R+R R PG+
Sbjct: 192 GVASAAAGPATLRAPPGRGASS----ETMWPTENLSSRRRAPPQRRRTRAPSIARSLPGS 247
Query: 75 GR 76
GR
Sbjct: 248 GR 249
>gi|239753158 PREDICTED: hypothetical protein XP_002345577 [Homo
sapiens]
Length = 342
Score = 30.0 bits (66), Expect = 0.41
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 41 GLQEGRWRGLPRRSRPGARGRSRIADRLRGDPGTGRDGG 79
G ++ WRG RR R AR R+ LRGD G+GR GG
Sbjct: 194 GSRQRGWRGHGRRHR--ARVPRRLP--LRGDGGSGRQGG 228
>gi|169172508 PREDICTED: hypothetical protein [Homo sapiens]
Length = 402
Score = 30.0 bits (66), Expect = 0.41
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 18 GLRVPAATPKTPRQPPSTSSSSAGLQEGRWRG---LPRRSRPGARGRSRIADRLRGDPGT 74
G+ AA P T R PP +SS E W RR P R R+R R PG+
Sbjct: 313 GVASAAAGPATLRAPPGRGASS----ETMWPTENLSSRRRAPPQRRRTRAPSIARSLPGS 368
Query: 75 GR 76
GR
Sbjct: 369 GR 370
>gi|239747728 PREDICTED: hypothetical protein XP_002348255 [Homo
sapiens]
Length = 342
Score = 30.0 bits (66), Expect = 0.41
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 41 GLQEGRWRGLPRRSRPGARGRSRIADRLRGDPGTGRDGG 79
G ++ WRG RR R AR R+ LRGD G+GR GG
Sbjct: 194 GSRQRGWRGHGRRHR--ARVPRRLP--LRGDGGSGRQGG 228
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.128 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,395,814
Number of Sequences: 37866
Number of extensions: 209522
Number of successful extensions: 1720
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 155
Number of HSP's that attempted gapping in prelim test: 1492
Number of HSP's gapped (non-prelim): 384
length of query: 82
length of database: 18,247,518
effective HSP length: 54
effective length of query: 28
effective length of database: 16,202,754
effective search space: 453677112
effective search space used: 453677112
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.