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Search of human proteins with 239744563
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744563 PREDICTED: hypothetical protein XP_002343195 [Homo
sapiens]
(302 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239744563 PREDICTED: hypothetical protein XP_002343195 [Homo ... 619 e-177
gi|119943125 G protein-coupled receptor 64 isoform 3 [Homo sapiens] 33 0.24
gi|119943116 G protein-coupled receptor 64 isoform 2 [Homo sapiens] 33 0.24
gi|119943120 G protein-coupled receptor 64 isoform 1 [Homo sapiens] 33 0.24
gi|119943129 G protein-coupled receptor 64 isoform 4 [Homo sapiens] 33 0.24
gi|226443152 abhydrolase domain containing 14B [Homo sapiens] 32 0.90
gi|14249382 abhydrolase domain containing 14B [Homo sapiens] 32 0.90
gi|149944516 tet oncogene family member 3 [Homo sapiens] 30 3.4
gi|94400921 trypsin domain containing 1 isoform a [Homo sapiens] 30 3.4
gi|239755402 PREDICTED: hypothetical protein [Homo sapiens] 29 4.5
gi|239749910 PREDICTED: hypothetical protein XP_002347211 [Homo ... 29 4.5
gi|239744211 PREDICTED: hypothetical protein XP_002343075 [Homo ... 29 4.5
gi|9910362 semaphorin sem2 [Homo sapiens] 28 7.6
gi|7661862 protein phosphatase 1F [Homo sapiens] 28 7.6
gi|21389431 leucine rich repeat containing 39 [Homo sapiens] 28 7.6
gi|194294548 hsp70-interacting protein [Homo sapiens] 28 10.0
gi|112363070 hsp70-interacting protein [Homo sapiens] 28 10.0
gi|239755452 PREDICTED: hypothetical protein [Homo sapiens] 28 10.0
gi|239749933 PREDICTED: hypothetical protein XP_002347217 [Homo ... 28 10.0
gi|239744256 PREDICTED: hypothetical protein XP_002343085 [Homo ... 28 10.0
gi|4503607 electron transfer flavoprotein, alpha polypeptide iso... 28 10.0
>gi|239744563 PREDICTED: hypothetical protein XP_002343195 [Homo
sapiens]
Length = 302
Score = 619 bits (1596), Expect = e-177
Identities = 302/302 (100%), Positives = 302/302 (100%)
Query: 1 MVLCPHCQPYLRHITEETAPVEVLVGGPLGEVVPGAFQEEVGEDLADGLPVGVVLVAFLE 60
MVLCPHCQPYLRHITEETAPVEVLVGGPLGEVVPGAFQEEVGEDLADGLPVGVVLVAFLE
Sbjct: 1 MVLCPHCQPYLRHITEETAPVEVLVGGPLGEVVPGAFQEEVGEDLADGLPVGVVLVAFLE 60
Query: 61 EDGDGLPVGVVLVAFLEEEGDGLPVGVVLVAFPEEVVDLVAAGLLVGVVPAEGHHPGSHH 120
EDGDGLPVGVVLVAFLEEEGDGLPVGVVLVAFPEEVVDLVAAGLLVGVVPAEGHHPGSHH
Sbjct: 61 EDGDGLPVGVVLVAFLEEEGDGLPVGVVLVAFPEEVVDLVAAGLLVGVVPAEGHHPGSHH 120
Query: 121 QQRVEIAVLPKVVPDAPHLGTAQSLLHLCELKQEELSSCWKTLLSSYLSVFTTRPAPLCL 180
QQRVEIAVLPKVVPDAPHLGTAQSLLHLCELKQEELSSCWKTLLSSYLSVFTTRPAPLCL
Sbjct: 121 QQRVEIAVLPKVVPDAPHLGTAQSLLHLCELKQEELSSCWKTLLSSYLSVFTTRPAPLCL 180
Query: 181 TCLSTPNLPPSQGFLIRTPLNPHKGDEKLNFFTHGPQNQGWEKTVCIFGALVLFPIGPGD 240
TCLSTPNLPPSQGFLIRTPLNPHKGDEKLNFFTHGPQNQGWEKTVCIFGALVLFPIGPGD
Sbjct: 181 TCLSTPNLPPSQGFLIRTPLNPHKGDEKLNFFTHGPQNQGWEKTVCIFGALVLFPIGPGD 240
Query: 241 EQSCLGDFRSTIMSKRKVREKEQRGVPGRYCLMMWGTEEAAGLVQDRFLLGSRVQEKNRK 300
EQSCLGDFRSTIMSKRKVREKEQRGVPGRYCLMMWGTEEAAGLVQDRFLLGSRVQEKNRK
Sbjct: 241 EQSCLGDFRSTIMSKRKVREKEQRGVPGRYCLMMWGTEEAAGLVQDRFLLGSRVQEKNRK 300
Query: 301 SS 302
SS
Sbjct: 301 SS 302
>gi|119943125 G protein-coupled receptor 64 isoform 3 [Homo sapiens]
Length = 995
Score = 33.5 bits (75), Expect = 0.24
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 133 VPDAPHL--GTAQSLLHLCELKQEELSSCWKTLLSSYLSVFTTRPAPLCLTCLSTPNL 188
VP H+ GT +L L ELK+ EL+ +TL +Y + T A L C T L
Sbjct: 114 VPQNQHITNGTLTGVLSLSELKRSELNKTLQTLSETYFIMCATAEAQSTLNCTFTIKL 171
>gi|119943116 G protein-coupled receptor 64 isoform 2 [Homo sapiens]
Length = 1003
Score = 33.5 bits (75), Expect = 0.24
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 133 VPDAPHL--GTAQSLLHLCELKQEELSSCWKTLLSSYLSVFTTRPAPLCLTCLSTPNL 188
VP H+ GT +L L ELK+ EL+ +TL +Y + T A L C T L
Sbjct: 122 VPQNQHITNGTLTGVLSLSELKRSELNKTLQTLSETYFIMCATAEAQSTLNCTFTIKL 179
>gi|119943120 G protein-coupled receptor 64 isoform 1 [Homo sapiens]
Length = 1017
Score = 33.5 bits (75), Expect = 0.24
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 133 VPDAPHL--GTAQSLLHLCELKQEELSSCWKTLLSSYLSVFTTRPAPLCLTCLSTPNL 188
VP H+ GT +L L ELK+ EL+ +TL +Y + T A L C T L
Sbjct: 136 VPQNQHITNGTLTGVLSLSELKRSELNKTLQTLSETYFIMCATAEAQSTLNCTFTIKL 193
>gi|119943129 G protein-coupled receptor 64 isoform 4 [Homo sapiens]
Length = 1014
Score = 33.5 bits (75), Expect = 0.24
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 133 VPDAPHL--GTAQSLLHLCELKQEELSSCWKTLLSSYLSVFTTRPAPLCLTCLSTPNL 188
VP H+ GT +L L ELK+ EL+ +TL +Y + T A L C T L
Sbjct: 133 VPQNQHITNGTLTGVLSLSELKRSELNKTLQTLSETYFIMCATAEAQSTLNCTFTIKL 190
>gi|226443152 abhydrolase domain containing 14B [Homo sapiens]
Length = 210
Score = 31.6 bits (70), Expect = 0.90
Identities = 27/73 (36%), Positives = 33/73 (45%), Gaps = 14/73 (19%)
Query: 9 PYLRHITEETAPVEVLVGGPLGEVVPGAFQEEVGEDLADGLPV-------GVVLVAFLEE 61
P L H E AP P+GE+ PG+F V + L G PV G+ + FL
Sbjct: 70 PGLGHSKEAAAPA------PIGELAPGSFLAAVVDALELGPPVVISPSLSGMYSLPFLTA 123
Query: 62 DGDGLPVGVVLVA 74
G LP G V VA
Sbjct: 124 PGSQLP-GFVPVA 135
>gi|14249382 abhydrolase domain containing 14B [Homo sapiens]
Length = 210
Score = 31.6 bits (70), Expect = 0.90
Identities = 27/73 (36%), Positives = 33/73 (45%), Gaps = 14/73 (19%)
Query: 9 PYLRHITEETAPVEVLVGGPLGEVVPGAFQEEVGEDLADGLPV-------GVVLVAFLEE 61
P L H E AP P+GE+ PG+F V + L G PV G+ + FL
Sbjct: 70 PGLGHSKEAAAPA------PIGELAPGSFLAAVVDALELGPPVVISPSLSGMYSLPFLTA 123
Query: 62 DGDGLPVGVVLVA 74
G LP G V VA
Sbjct: 124 PGSQLP-GFVPVA 135
>gi|149944516 tet oncogene family member 3 [Homo sapiens]
Length = 1660
Score = 29.6 bits (65), Expect = 3.4
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 109 VPAEGHHPGSHHQQRVEIAVLPKVVPDAPHL 139
VP + HHP HHQQ ++P AP L
Sbjct: 1210 VPTDAHHPTPHHQQPAYPGPKEYLLPKAPLL 1240
>gi|94400921 trypsin domain containing 1 isoform a [Homo sapiens]
Length = 566
Score = 29.6 bits (65), Expect = 3.4
Identities = 35/115 (30%), Positives = 46/115 (40%), Gaps = 18/115 (15%)
Query: 1 MVLCPHCQPY--LRHITEETAPVEVLVGGPLGEVVPGAFQEEVGEDLADGLPVGVVLVAF 58
+V C H P R + T P V + G V A QE D+A V
Sbjct: 367 VVTCRHVSPREAARVLVRSTTPKSVAIWGR----VVFATQETCPYDIA---------VVS 413
Query: 59 LEEDGDGLPVGVVLVAFLEEEGDGLPVGVVLVAFPEEVVDLVAAGLLVGVVPAEG 113
LEED D +P+ V F EG+ + V V F + V +G+L VV G
Sbjct: 414 LEEDLDDVPIPVPAEHF--HEGEAVSV-VGFGVFGQSCGPSVTSGILSAVVQVNG 465
>gi|239755402 PREDICTED: hypothetical protein [Homo sapiens]
Length = 321
Score = 29.3 bits (64), Expect = 4.5
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 82 GLPVGVVLVAFPEEVVDLVAAGLLVGVVPAEGHHPGSHHQQRVEIAVLPKVVPD 135
G+ V V V P++V D+ PA+G H HHQQ E A P VP+
Sbjct: 49 GVRVDGVGVEVPQQVEDVQRQ-------PADGEHHHDHHQQ-AEGAPAPSAVPE 94
>gi|239749910 PREDICTED: hypothetical protein XP_002347211 [Homo
sapiens]
Length = 321
Score = 29.3 bits (64), Expect = 4.5
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 82 GLPVGVVLVAFPEEVVDLVAAGLLVGVVPAEGHHPGSHHQQRVEIAVLPKVVPD 135
G+ V V V P++V D+ PA+G H HHQQ E A P VP+
Sbjct: 49 GVRVDGVGVEVPQQVEDVQRQ-------PADGEHHHDHHQQ-AEGAPAPSAVPE 94
>gi|239744211 PREDICTED: hypothetical protein XP_002343075 [Homo
sapiens]
Length = 321
Score = 29.3 bits (64), Expect = 4.5
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 82 GLPVGVVLVAFPEEVVDLVAAGLLVGVVPAEGHHPGSHHQQRVEIAVLPKVVPD 135
G+ V V V P++V D+ PA+G H HHQQ E A P VP+
Sbjct: 49 GVRVDGVGVEVPQQVEDVQRQ-------PADGEHHHDHHQQ-AEGAPAPSAVPE 94
>gi|9910362 semaphorin sem2 [Homo sapiens]
Length = 782
Score = 28.5 bits (62), Expect = 7.6
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 224 TVCIFGALVLFPIGPGDEQSCLGDFRSTIMSKRKVREKEQRGVPGRYCLMMWGTEEAAGL 283
T C L P D SC +R ++ +R R+ + G P CL EEA GL
Sbjct: 527 TACAECCLARDPYCAWDGASCT-HYRPSLGKRRFRRQDIRHGNPALQCLGQSQEEEAVGL 585
Query: 284 VQDRFLLGS 292
V + G+
Sbjct: 586 VAATMVYGT 594
>gi|7661862 protein phosphatase 1F [Homo sapiens]
Length = 454
Score = 28.5 bits (62), Expect = 7.6
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 51 VGVVLVAFLEEDGDGLPVGVVLVAFLEEEG--DGLPVGVVLVAFPEEVVD 98
VG+V + G GL V LVA E G D + V VV + P+E+++
Sbjct: 372 VGLVQSHLTRQQGSGLRVAEELVAAARERGSHDNITVMVVFLRDPQELLE 421
>gi|21389431 leucine rich repeat containing 39 [Homo sapiens]
Length = 335
Score = 28.5 bits (62), Expect = 7.6
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
Query: 122 QRVEIAVLPKVVPDAPHLGTAQSLLHLCELKQEELSSCWKTLLSSYLSVFTTRPAPLCLT 181
QR EI LP+ + + +LGT L L K +++ C + + + F P L +
Sbjct: 230 QRNEITCLPQTISNMKNLGT----LVLSNNKLQDIPVCMEEMANLRFVNFRDNPLKLKV- 284
Query: 182 CLSTPNLPPSQG 193
+LPPS+G
Sbjct: 285 -----SLPPSEG 291
>gi|194294548 hsp70-interacting protein [Homo sapiens]
Length = 359
Score = 28.1 bits (61), Expect = 10.0
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 15/96 (15%)
Query: 88 VLVAFPEEVVDLVAAGL---LVGVVPAEGHHPGSHHQQRVEIAVL---PKVVPDA--PHL 139
+LV PE L + G+ LV +V E H P H +++ P+ V + P L
Sbjct: 257 LLVGHPEHKGTLCSMGMVQQLVALVRTE-HSPFHEHVLGALCSLVTDFPQGVRECREPEL 315
Query: 140 GTAQSLLHLCEL------KQEELSSCWKTLLSSYLS 169
G + L H C+L QEEL C K L + + S
Sbjct: 316 GLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSS 351
>gi|112363070 hsp70-interacting protein [Homo sapiens]
Length = 359
Score = 28.1 bits (61), Expect = 10.0
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 15/96 (15%)
Query: 88 VLVAFPEEVVDLVAAGL---LVGVVPAEGHHPGSHHQQRVEIAVL---PKVVPDA--PHL 139
+LV PE L + G+ LV +V E H P H +++ P+ V + P L
Sbjct: 257 LLVGHPEHKGTLCSMGMVQQLVALVRTE-HSPFHEHVLGALCSLVTDFPQGVRECREPEL 315
Query: 140 GTAQSLLHLCEL------KQEELSSCWKTLLSSYLS 169
G + L H C+L QEEL C K L + + S
Sbjct: 316 GLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSS 351
>gi|239755452 PREDICTED: hypothetical protein [Homo sapiens]
Length = 171
Score = 28.1 bits (61), Expect = 10.0
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
Query: 2 VLCPHCQPYLRH-ITEETAPVEVLVGGPLGEVVPGAFQEEVGEDLADGLPVGVVLVAFLE 60
+LC C Y H + E+ APV L P+GE A + E D++ GL +G +E
Sbjct: 4 LLCGWCWVYSAHLVPEDVAPVAFLT-APIGE----APRTEAMADVSWGLGLGQGTEQVVE 58
Query: 61 EDGDGLP----VGVVLVAFLEEEGDGLPVGVVLVAFPEEVVDLVAAGLLVGVVPA 111
GL V F E G GL V + + ++ L AGL + + A
Sbjct: 59 GATQGLAQLQGPHHVQATFYPELGPGLCVSRIQSSPGLQLQGLSEAGLSLSLAAA 113
>gi|239749933 PREDICTED: hypothetical protein XP_002347217 [Homo
sapiens]
Length = 171
Score = 28.1 bits (61), Expect = 10.0
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
Query: 2 VLCPHCQPYLRH-ITEETAPVEVLVGGPLGEVVPGAFQEEVGEDLADGLPVGVVLVAFLE 60
+LC C Y H + E+ APV L P+GE A + E D++ GL +G +E
Sbjct: 4 LLCGWCWVYSAHLVPEDVAPVAFLT-APIGE----APRTEAMADVSWGLGLGQGTEQVVE 58
Query: 61 EDGDGLP----VGVVLVAFLEEEGDGLPVGVVLVAFPEEVVDLVAAGLLVGVVPA 111
GL V F E G GL V + + ++ L AGL + + A
Sbjct: 59 GATQGLAQLQGPHHVQATFYPELGPGLCVSRIQSSPGLQLQGLSEAGLSLSLAAA 113
>gi|239744256 PREDICTED: hypothetical protein XP_002343085 [Homo
sapiens]
Length = 171
Score = 28.1 bits (61), Expect = 10.0
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
Query: 2 VLCPHCQPYLRH-ITEETAPVEVLVGGPLGEVVPGAFQEEVGEDLADGLPVGVVLVAFLE 60
+LC C Y H + E+ APV L P+GE A + E D++ GL +G +E
Sbjct: 4 LLCGWCWVYSAHLVPEDVAPVAFLT-APIGE----APRTEAMADVSWGLGLGQGTEQVVE 58
Query: 61 EDGDGLP----VGVVLVAFLEEEGDGLPVGVVLVAFPEEVVDLVAAGLLVGVVPA 111
GL V F E G GL V + + ++ L AGL + + A
Sbjct: 59 GATQGLAQLQGPHHVQATFYPELGPGLCVSRIQSSPGLQLQGLSEAGLSLSLAAA 113
>gi|4503607 electron transfer flavoprotein, alpha polypeptide
isoform a [Homo sapiens]
Length = 333
Score = 28.1 bits (61), Expect = 10.0
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 1 MVLCPHCQPYLRHITEETAPVEVLVGGPLGEVVPGAFQEEVGEDLADGLPVGVVLVA 57
+V+ H L IT T +GG + +V G ++V +DL + VLVA
Sbjct: 23 LVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAGIAKVLVA 79
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.140 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,002,986
Number of Sequences: 37866
Number of extensions: 745161
Number of successful extensions: 1395
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1382
Number of HSP's gapped (non-prelim): 21
length of query: 302
length of database: 18,247,518
effective HSP length: 102
effective length of query: 200
effective length of database: 14,385,186
effective search space: 2877037200
effective search space used: 2877037200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.