Search of human proteins with 239744223

Search of human proteins with 239744223

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]
         (332 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]                 676   0.0  
gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]                 676   0.0  
gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]                 676   0.0  
gi|226437602 NK1 homeobox 2 [Homo sapiens]                            619   e-177
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]                 189   4e-48
gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]               189   4e-48
gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]                 175   6e-44
gi|118582284 msh homeobox 1 [Homo sapiens]                             94   2e-19
gi|89257348 homeo box HB9 [Homo sapiens]                               93   3e-19
gi|4758168 distal-less homeobox 2 [Homo sapiens]                       92   6e-19
gi|4502365 NK3 homeobox 2 [Homo sapiens]                               90   2e-18
gi|24497589 aristaless related homeobox [Homo sapiens]                 88   9e-18
gi|12707580 paired-like homeobox 2b [Homo sapiens]                     88   1e-17
gi|13273315 homeobox B4 [Homo sapiens]                                 87   2e-17
gi|157743259 H6 family homeobox 3 [Homo sapiens]                       87   3e-17
gi|149588930 gastrulation brain homeo box 1 [Homo sapiens]             87   3e-17
gi|84570137 homeobox B3 [Homo sapiens]                                 87   3e-17
gi|126116581 retina and anterior neural fold homeobox [Homo sapi...    85   8e-17
gi|14149728 BarH-like homeobox 1 [Homo sapiens]                        85   8e-17
gi|6633798 BarH-like homeobox 2 [Homo sapiens]                         85   1e-16
gi|116805350 homeo box (H6 family) 1 [Homo sapiens]                    84   1e-16
gi|148613882 homeobox A4 [Homo sapiens]                                84   2e-16
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]           83   4e-16
gi|126090909 engrailed homeobox 1 [Homo sapiens]                       82   9e-16
gi|148746211 NK2 transcription factor related, locus 3 [Homo sap...    82   9e-16
gi|24497513 homeobox A3 isoform a [Homo sapiens]                       81   1e-15
gi|13562112 homeobox A3 isoform a [Homo sapiens]                       81   1e-15
gi|39930383 BarH-like homeobox 2 [Homo sapiens]                        81   1e-15
gi|45593144 gastrulation brain homeo box 2 [Homo sapiens]              81   1e-15
gi|24497538 homeobox C4 [Homo sapiens]                                 80   2e-15

>gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]
          Length = 332

 Score =  676 bits (1745), Expect = 0.0
 Identities = 332/332 (100%), Positives = 332/332 (100%)

Query: 1   MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDAS 60
           MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDAS
Sbjct: 1   MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDAS 60

Query: 61  SRDPVRQLETPGQGFAASLLTRQAHPHHSSDARDAAGPGAGQASPLEGSEAEEEEDAEDP 120
           SRDPVRQLETPGQGFAASLLTRQAHPHHSSDARDAAGPGAGQASPLEGSEAEEEEDAEDP
Sbjct: 61  SRDPVRQLETPGQGFAASLLTRQAHPHHSSDARDAAGPGAGQASPLEGSEAEEEEDAEDP 120

Query: 121 RRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEP 180
           RRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEP
Sbjct: 121 RRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEP 180

Query: 181 NCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKW 240
           NCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKW
Sbjct: 181 NCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKW 240

Query: 241 KKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPS 300
           KKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPS
Sbjct: 241 KKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPS 300

Query: 301 AASFPLTAAAPGSPFAPFLGPSYLTPFYAPRL 332
           AASFPLTAAAPGSPFAPFLGPSYLTPFYAPRL
Sbjct: 301 AASFPLTAAAPGSPFAPFLGPSYLTPFYAPRL 332


>gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]
          Length = 332

 Score =  676 bits (1745), Expect = 0.0
 Identities = 332/332 (100%), Positives = 332/332 (100%)

Query: 1   MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDAS 60
           MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDAS
Sbjct: 1   MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDAS 60

Query: 61  SRDPVRQLETPGQGFAASLLTRQAHPHHSSDARDAAGPGAGQASPLEGSEAEEEEDAEDP 120
           SRDPVRQLETPGQGFAASLLTRQAHPHHSSDARDAAGPGAGQASPLEGSEAEEEEDAEDP
Sbjct: 61  SRDPVRQLETPGQGFAASLLTRQAHPHHSSDARDAAGPGAGQASPLEGSEAEEEEDAEDP 120

Query: 121 RRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEP 180
           RRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEP
Sbjct: 121 RRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEP 180

Query: 181 NCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKW 240
           NCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKW
Sbjct: 181 NCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKW 240

Query: 241 KKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPS 300
           KKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPS
Sbjct: 241 KKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPS 300

Query: 301 AASFPLTAAAPGSPFAPFLGPSYLTPFYAPRL 332
           AASFPLTAAAPGSPFAPFLGPSYLTPFYAPRL
Sbjct: 301 AASFPLTAAAPGSPFAPFLGPSYLTPFYAPRL 332


>gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]
          Length = 332

 Score =  676 bits (1745), Expect = 0.0
 Identities = 332/332 (100%), Positives = 332/332 (100%)

Query: 1   MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDAS 60
           MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDAS
Sbjct: 1   MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDAS 60

Query: 61  SRDPVRQLETPGQGFAASLLTRQAHPHHSSDARDAAGPGAGQASPLEGSEAEEEEDAEDP 120
           SRDPVRQLETPGQGFAASLLTRQAHPHHSSDARDAAGPGAGQASPLEGSEAEEEEDAEDP
Sbjct: 61  SRDPVRQLETPGQGFAASLLTRQAHPHHSSDARDAAGPGAGQASPLEGSEAEEEEDAEDP 120

Query: 121 RRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEP 180
           RRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEP
Sbjct: 121 RRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEP 180

Query: 181 NCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKW 240
           NCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKW
Sbjct: 181 NCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKW 240

Query: 241 KKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPS 300
           KKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPS
Sbjct: 241 KKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPS 300

Query: 301 AASFPLTAAAPGSPFAPFLGPSYLTPFYAPRL 332
           AASFPLTAAAPGSPFAPFLGPSYLTPFYAPRL
Sbjct: 301 AASFPLTAAAPGSPFAPFLGPSYLTPFYAPRL 332


>gi|226437602 NK1 homeobox 2 [Homo sapiens]
          Length = 310

 Score =  619 bits (1596), Expect = e-177
 Identities = 310/332 (93%), Positives = 310/332 (93%), Gaps = 22/332 (6%)

Query: 1   MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDAS 60
           MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDAS
Sbjct: 1   MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDAS 60

Query: 61  SRDPVRQLETPGQGFAASLLTRQAHPHHSSDARDAAGPGAGQASPLEGSEAEEEEDAEDP 120
           SRDPVRQLETP                      DAAGPGAGQASPLEGSEAEEEEDAEDP
Sbjct: 61  SRDPVRQLETP----------------------DAAGPGAGQASPLEGSEAEEEEDAEDP 98

Query: 121 RRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEP 180
           RRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEP
Sbjct: 99  RRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEP 158

Query: 181 NCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKW 240
           NCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKW
Sbjct: 159 NCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKW 218

Query: 241 KKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPS 300
           KKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPS
Sbjct: 219 KKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPS 278

Query: 301 AASFPLTAAAPGSPFAPFLGPSYLTPFYAPRL 332
           AASFPLTAAAPGSPFAPFLGPSYLTPFYAPRL
Sbjct: 279 AASFPLTAAAPGSPFAPFLGPSYLTPFYAPRL 310


>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
          Length = 814

 Score =  189 bits (479), Expect = 4e-48
 Identities = 158/384 (41%), Positives = 189/384 (49%), Gaps = 62/384 (16%)

Query: 7   GGAKAAPSHHKISFSVLDILDPQKFTR-----AALPAVRPAPREARKSLAEVEAGKDASS 61
           G A+ A      SFSVLDILDP KF         L  V PA   A  + A       AS 
Sbjct: 435 GAARPAAPLRPTSFSVLDILDPNKFNSRRRRCVLLGPVAPAAC-APCASAPCAPAPAASG 493

Query: 62  RDP-VRQLETPGQGFAASLLTRQAHPHHSSDARDA------------AGPGAGQASPLEG 108
           R P   +LE      A  +    A P ++ D   A            +G G    S   G
Sbjct: 494 RPPRAEELERRALAGAGGVGAAGAEPPNAGDPFKAGEAETNDTNGYSSGGGGHSPSADSG 553

Query: 109 SEAEEEEDAEDPRRP-----RLRERAARLLPGLA-------------RSPDAPAGALASG 150
            E  ++ED ++   P     R  E A     GL               SP A     A+ 
Sbjct: 554 DEVPDDEDDDEDEAPETEAARGAEEARGGGGGLGARGSGCQGAAETDASPGATVDEAAAP 613

Query: 151 EPCED--------GG----GGPVRSPPGSPGSPRPRRRRL--EPNCAKPRRARTAFTYEQ 196
            P E+        GG    GG   +P G+  + +P+R+R   +    KPRRARTAFTYEQ
Sbjct: 614 GPRENSPVAPGPPGGAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYEQ 673

Query: 197 LVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADGAAQV-GG 255
           LVALENKF+ATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGAD +A   GG
Sbjct: 674 LVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTSAPTGGG 733

Query: 256 GAPQPGAAGGGG--GGGSGGSPGPPGTGALHFQ---TFPSYSAANVLFPSAASFPLTAAA 310
           G P PGA  G G  GG S  SP PP    L       +P++    ++  +   F L++ A
Sbjct: 734 GGPGPGAGPGTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAHGPGGLVCAAQLPF-LSSPA 792

Query: 311 PGSPFAPFLG-PSYLTP-FYAPRL 332
             SPF   LG  +Y  P FYAP L
Sbjct: 793 VLSPFV--LGSQTYGAPAFYAPHL 814


>gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]
          Length = 411

 Score =  189 bits (479), Expect = 4e-48
 Identities = 158/384 (41%), Positives = 188/384 (48%), Gaps = 62/384 (16%)

Query: 7   GGAKAAPSHHKISFSVLDILDPQKFTR-----AALPAVRPAPREARKSLAEVEAGKDASS 61
           G A+ A      SFSVLDILDP KF         L  V PA      S A       AS 
Sbjct: 32  GAARPAAPLRPTSFSVLDILDPNKFNSRRRRCVLLGPVAPAACAPCAS-APCAPAPAASG 90

Query: 62  RDP-VRQLETPGQGFAASLLTRQAHPHHSSDARDA------------AGPGAGQASPLEG 108
           R P   +LE      A  +    A P ++ D   A            +G G    S   G
Sbjct: 91  RPPRAEELERRALAGAGGVGAAGAEPPNAGDPFKAGEAETNDTNGYSSGGGGHSPSADSG 150

Query: 109 SEAEEEEDAEDPRRP-----RLRERAARLLPGLAR-------------SPDAPAGALASG 150
            E  ++ED ++   P     R  E A     GL               SP A     A+ 
Sbjct: 151 DEVPDDEDDDEDEAPETEAARGAEEARGGGGGLGARGSGCQGAAETDASPGATVDEAAAP 210

Query: 151 EPCED--------GG----GGPVRSPPGSPGSPRPRRRRL--EPNCAKPRRARTAFTYEQ 196
            P E+        GG    GG   +P G+  + +P+R+R   +    KPRRARTAFTYEQ
Sbjct: 211 GPRENSPVAQGPPGGAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYEQ 270

Query: 197 LVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADGAAQV-GG 255
           LVALENKF+ATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGAD +A   GG
Sbjct: 271 LVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTSAPTGGG 330

Query: 256 GAPQPGAAGGGG--GGGSGGSPGPPGTGALHFQ---TFPSYSAANVLFPSAASFPLTAAA 310
           G P PGA  G G  GG S  SP PP    L       +P++    ++  +   F L++ A
Sbjct: 331 GGPGPGAGPGTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAHGPGGLVCAAQLPF-LSSPA 389

Query: 311 PGSPFAPFLG-PSYLTP-FYAPRL 332
             SPF   LG  +Y  P FYAP L
Sbjct: 390 VLSPFV--LGSQTYGAPAFYAPHL 411


>gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]
          Length = 653

 Score =  175 bits (443), Expect = 6e-44
 Identities = 114/223 (51%), Positives = 134/223 (60%), Gaps = 21/223 (9%)

Query: 120 PRRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRL- 178
           P  P  R+R          +P  P GA A G        G   +P G+  + +P+R+R  
Sbjct: 38  PEPPSTRQRPPGPRENSPVAPGPPGGAAAPG--------GAGTTPQGTATAAKPKRKRTG 89

Query: 179 -EPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRR 237
            +    KPRRARTAFTYEQLVALENKF+ATRYLSVCERLNLALSLSLTETQVKIWFQNRR
Sbjct: 90  SDSKSGKPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRR 149

Query: 238 TKWKKQNPGADGAAQV-GGGAPQPGAAGGGG--GGGSGGSPGPPGTGALHFQ---TFPSY 291
           TKWKKQNPGAD +A   GGG P PGA  G G  GG S  SP PP    L       +P++
Sbjct: 150 TKWKKQNPGADTSAPTGGGGGPGPGAGPGTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAH 209

Query: 292 SAANVLFPSAASFPLTAAAPGSPFAPFLG-PSYLTP-FYAPRL 332
               ++  +   F L++ A  SPF   LG  +Y  P FYAP L
Sbjct: 210 GPGGLVCAAQLPF-LSSPAVLSPFV--LGSQTYGAPAFYAPHL 249


>gi|118582284 msh homeobox 1 [Homo sapiens]
          Length = 303

 Score = 93.6 bits (231), Expect = 2e-19
 Identities = 88/272 (32%), Positives = 103/272 (37%), Gaps = 77/272 (28%)

Query: 96  AGPGAGQASPLEGSEAE----EEEDAEDPRRPRLRERAARLLPGLARSPDAPAGALASGE 151
           AG GAGQA     + A     +EE A+    P L   +   L    R P A   ALA  E
Sbjct: 25  AGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLLPFSVEALMADHRKPGAKESALAPSE 84

Query: 152 PCEDGGGG--PVRSPPGSPG---------------------------------------- 169
             +  GG   P+  PPGS G                                        
Sbjct: 85  GVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLKLPEDALVKAESPEKPERTP 144

Query: 170 -------SPRPRRRRLEPNCA-----KPRRARTAFTYEQLVALENKFRATRYLSVCERLN 217
                  SP P RR   P C        R+ RT FT  QL+ALE KFR  +YLS+ ER  
Sbjct: 145 WMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAE 204

Query: 218 LALSLSLTETQVKIWFQNRRTKWKKQN----------------PGADGAAQVGGGAPQPG 261
            + SLSLTETQVKIWFQNRR K K+                  P A G +   GG   P 
Sbjct: 205 FSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPPAAFGLSFPLGG---PA 261

Query: 262 AAGGGGGGGSGGSPGPPGTGALHFQTFPSYSA 293
           A     G    G+ GP    AL       Y+A
Sbjct: 262 AVAAAAGASLYGASGPFQRAALPVAPVGLYTA 293


>gi|89257348 homeo box HB9 [Homo sapiens]
          Length = 401

 Score = 93.2 bits (230), Expect = 3e-19
 Identities = 52/106 (49%), Positives = 63/106 (59%), Gaps = 13/106 (12%)

Query: 184 KPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 243
           K RR RTAFT +QL+ LE++F+  +YLS  +R  +A SL LTETQVKIWFQNRR KWK+ 
Sbjct: 240 KCRRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRS 299

Query: 244 NPGADGAAQVGGGAPQPGAAGGGGGGGSGGSP--------GPPGTG 281
               + AAQ           GGGGG G GG+         GPP  G
Sbjct: 300 KKAKEQAAQ-----EAEKQKGGGGGAGKGGAEEPGAEELLGPPAPG 340



 Score = 33.5 bits (75), Expect = 0.27
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 8/48 (16%)

Query: 258 PQPG--AAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPSAAS 303
           P+PG   AGGGGGG  GG  GP      H    P  +AA     +AA+
Sbjct: 92  PKPGFLGAGGGGGGTGGGHGGP------HHHAHPGAAAAAAAAAAAAA 133



 Score = 29.6 bits (65), Expect = 3.9
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 9/53 (16%)

Query: 262 AAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPSAASFPLTAAAPGSP 314
           A+G GGGGG GG+ G  GT         S S A+   P+A +  L A +P  P
Sbjct: 38  ASGTGGGGGGGGASG--GTSG-------SCSPASSEPPAAPADRLRAESPSPP 81



 Score = 29.3 bits (64), Expect = 5.1
 Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 244 NPGADGAAQVGGGAPQPGA-AGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPSAA 302
           +PGA  AA     A   G  A G   GG+ G  G P   AL+      YSAA      A 
Sbjct: 118 HPGAAAAAAAAAAAAAAGGLALGLHPGGAQGGAGLPAQAALYGHPVYGYSAAAAAAALAG 177

Query: 303 SFP 305
             P
Sbjct: 178 QHP 180


>gi|4758168 distal-less homeobox 2 [Homo sapiens]
          Length = 328

 Score = 92.0 bits (227), Expect = 6e-19
 Identities = 67/177 (37%), Positives = 88/177 (49%), Gaps = 37/177 (20%)

Query: 167 SPGSPRPRRRRLEPNCA-------KPRRARTAFTYEQLVALENKFRATRYLSVCERLNLA 219
           SP +  P +  LEP          K R+ RT ++  QL AL+ +F+ T+YL++ ER  LA
Sbjct: 127 SPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELA 186

Query: 220 LSLSLTETQVKIWFQNRRTKWKK----------QNPGADGA-----------AQVGGGAP 258
            SL LT+TQVKIWFQNRR+K+KK          Q+PGA  +           A    G P
Sbjct: 187 ASLGLTQTQVKIWFQNRRSKFKKMWKSGEIPSEQHPGASASPPCASPPVSAPASWDFGVP 246

Query: 259 QPGAAGGG---GGGGSGGSPGPPGTGALHF-QTFPSYSAANVLFPSAASFPLTAAAP 311
           Q  A GGG   GG G+G S   P + A  F   +P Y        S ++  L A AP
Sbjct: 247 QRMAGGGGPGSGGSGAGSSGSSPSSAASAFLGNYPWYHQT-----SGSASHLQATAP 298


>gi|4502365 NK3 homeobox 2 [Homo sapiens]
          Length = 333

 Score = 90.1 bits (222), Expect = 2e-18
 Identities = 88/271 (32%), Positives = 117/271 (43%), Gaps = 53/271 (19%)

Query: 19  SFSVLDILDPQKFTRA-ALPAVRPAPREARKSLA------------EVEAGKDASSRDPV 65
           SFS+  IL+ ++     A P  RPAP     S+A            E +AG    + D +
Sbjct: 11  SFSIQAILNKKEERGGLAAPEGRPAPGGTAASVAAAPAVCCWRLFGERDAGALGGAEDSL 70

Query: 66  ------------RQLETP-GQGFAASLLTRQAHPHHSSDARDAAGPGAGQASPLEGS--- 109
                       R  E+P G    ++L          +DAR A+G G    S   G    
Sbjct: 71  LASPAGTRTAAGRTAESPEGWDSDSALSEENESRRRCADARGASGAGLAGGSLSLGQPVC 130

Query: 110 EAEEEEDAEDPRRPRLRERAARLLPGLARSPDA------PAGALASGEPCEDGGGGPVRS 163
           E    +D E+    R     +  + G  RSP        P GA  S   C   GGG    
Sbjct: 131 ELAASKDLEEEAAGRSDSEMSASVSG-DRSPRTEDDGVGPRGAHVSAL-CSGAGGGGGSG 188

Query: 164 PPG------SPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLN 217
           P G       P +P+PR++R          +R AF++ Q+  LE +F   RYLS  ER +
Sbjct: 189 PAGVAEEEEEPAAPKPRKKR----------SRAAFSHAQVFELERRFNHQRYLSGPERAD 238

Query: 218 LALSLSLTETQVKIWFQNRRTKWKKQNPGAD 248
           LA SL LTETQVKIWFQNRR K K++   AD
Sbjct: 239 LAASLKLTETQVKIWFQNRRYKTKRRQMAAD 269


>gi|24497589 aristaless related homeobox [Homo sapiens]
          Length = 562

 Score = 88.2 bits (217), Expect = 9e-18
 Identities = 86/266 (32%), Positives = 112/266 (42%), Gaps = 32/266 (12%)

Query: 95  AAGPGAG----QASPLEGSEAEEEEDA--EDPRRPRLRERAARLLPGLARSPDAPAGALA 148
           AAG G G    +   LE  E E+EE+   ED     L + A  LL    R P A  GA+A
Sbjct: 216 AAGGGTGTEDDEEELLEDEEDEDEEEELLEDDEEELLEDDARALLKEPRRCPVAATGAVA 275

Query: 149 SGEPC----EDGGGGPVRS----PPGSPGSPRPRRRRLEPNC--------AKPRRARTAF 192
           +        E G   P       P  + G        L             K RR RT F
Sbjct: 276 AAAAAAVATEGGELSPKEELLLHPEDAEGKDGEDSVCLSAGSDSEEGLLKRKQRRYRTTF 335

Query: 193 TYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADGAAQ 252
           T  QL  LE  F+ T Y  V  R  LA+ L LTE +V++WFQNRR KW+K+         
Sbjct: 336 TSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREKAGAQTHP 395

Query: 253 VGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPSAASFPLTAAAP- 311
            G   P P +A          SP PP   AL      + +AA   FPS    P +A+ P 
Sbjct: 396 PGLPFPGPLSATHPLSPYLDASPFPPHHPALDSAWTAAAAAAAAAFPSLPPPPGSASLPP 455

Query: 312 -GSP--FAPFLG------PSYLTPFY 328
            G+P   + FLG      P++++P +
Sbjct: 456 SGAPLGLSTFLGAAVFRHPAFISPAF 481



 Score = 31.6 bits (70), Expect = 1.0
 Identities = 46/183 (25%), Positives = 65/183 (35%), Gaps = 24/183 (13%)

Query: 100 AGQASPLEGSEAEEEEDAEDPRRPRLR-ERAARLLPGLARSPDAPAGALASGEPCEDGGG 158
           A Q SP   S   E E    P+  RL      RLL G A +  A A A A+      G  
Sbjct: 63  AVQGSPKSSSAPFEAELHLPPKLRRLYGPGGGRLLQGAAAAAAAAAAAAAAAATATAGPR 122

Query: 159 GPVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNL 218
           G   +PP  P + RP  R      A    A  A  ++ L                 +++ 
Sbjct: 123 G--EAPPPPPPTARPGERPDGAGAAAAAAAAAAAAWDTL-----------------KISQ 163

Query: 219 ALSLSLTETQVKIWFQNRRTKWKKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPP 278
           A  +S++ ++    ++     +    P  D     GG        G  GG GS  + G  
Sbjct: 164 APQVSISRSKS---YRENGAPFVPPPPALDELGGPGGVTHPEERLGVAGGPGSAPAAG-G 219

Query: 279 GTG 281
           GTG
Sbjct: 220 GTG 222


>gi|12707580 paired-like homeobox 2b [Homo sapiens]
          Length = 314

 Score = 87.8 bits (216), Expect = 1e-17
 Identities = 64/183 (34%), Positives = 75/183 (40%), Gaps = 45/183 (24%)

Query: 184 KPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 243
           K RR RT FT  QL  LE  F  T Y  +  R  LAL + LTE +V++WFQNRR K++KQ
Sbjct: 97  KQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQ 156

Query: 244 NPGADGAA-----------------------------QVGGGAPQP------GAAGGGGG 268
              A  AA                               GG  P P      GA GGGGG
Sbjct: 157 ERAAAAAAAAAKNGSSGKKSDSSRDDESKEAKSTDPDSTGGPGPNPNPTPSCGANGGGGG 216

Query: 269 G----------GSGGSPGPPGTGALHFQTFPSYSAANVLFPSAASFPLTAAAPGSPFAPF 318
           G          G GG  G PG G        + +AA     +AA     A  PG  +AP 
Sbjct: 217 GPSPAGAPGAAGPGGPGGEPGKGGAAAAAAAAAAAAAAAAAAAAGGLAAAGGPGQGWAPG 276

Query: 319 LGP 321
            GP
Sbjct: 277 PGP 279



 Score = 29.3 bits (64), Expect = 5.1
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 100 AGQASPLEGSEAEEEEDAEDPRRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGG 159
           A  A+   GS  ++ + + D      +        G   +P+      A+G     GGGG
Sbjct: 162 AAAAAAKNGSSGKKSDSSRDDESKEAKSTDPDSTGGPGPNPNPTPSCGANG----GGGGG 217

Query: 160 PVRSPPGSPGSPRP 173
           P  SP G+PG+  P
Sbjct: 218 P--SPAGAPGAAGP 229


>gi|13273315 homeobox B4 [Homo sapiens]
          Length = 251

 Score = 87.0 bits (214), Expect = 2e-17
 Identities = 62/172 (36%), Positives = 83/172 (48%), Gaps = 35/172 (20%)

Query: 134 PGLA-RSP-DAPAGALAS--GEPCEDGGGGPVRSPPG-SPGSPRPRRRR----------- 177
           PGL+ R+P   PAGAL    G+ CE     P   P   +P  P P               
Sbjct: 87  PGLSPRAPAPPPAGALLPEPGQRCEAVSSSPPPPPCAQNPLHPSPSHSACKEPVVYPWMR 146

Query: 178 ------LEPNCA--KPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQV 229
                 + PN A  +P+R+RTA+T +Q++ LE +F   RYL+   R+ +A +L L+E Q+
Sbjct: 147 KVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQI 206

Query: 230 KIWFQNRRTKWKKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTG 281
           KIWFQNRR KWKK +             P      GG  G +GG PG P  G
Sbjct: 207 KIWFQNRRMKWKKDHK-----------LPNTKIRSGGAAGSAGGPPGRPNGG 247


>gi|157743259 H6 family homeobox 3 [Homo sapiens]
          Length = 357

 Score = 86.7 bits (213), Expect = 3e-17
 Identities = 73/234 (31%), Positives = 96/234 (41%), Gaps = 40/234 (17%)

Query: 91  DARDAAGPGAGQASPLEGSEAEEEE-DAEDPRRPRLRE-------RAARLLPGLARSPDA 142
           D+  A+G       PL  ++ + +E D++ P    L E       +     PG A +   
Sbjct: 142 DSSPASGTDRDSPEPLLKADPDHKELDSKSPDEIILEESDSEESKKEGEAAPGAAGASVG 201

Query: 143 PAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALEN 202
            A A    E  + G   P + P                 C K ++ RT F+  Q+  LE+
Sbjct: 202 AAAATPGAEDWKKGAESPEKKPA----------------CRK-KKTRTVFSRSQVFQLES 244

Query: 203 KFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADGAAQVGGGAPQ--- 259
            F   RYLS  ER  LA SL LTETQVKIWFQNRR KWK+Q      AA +   A Q   
Sbjct: 245 TFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAAQRIV 304

Query: 260 -------PGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPSAASFPL 306
                    +A  G    + G+P P     L F     YS      P  +S PL
Sbjct: 305 RVPILYHENSAAEGAAAAAAGAPVPVSQPLLTFPHPVYYS-----HPVVSSVPL 353


>gi|149588930 gastrulation brain homeo box 1 [Homo sapiens]
          Length = 363

 Score = 86.7 bits (213), Expect = 3e-17
 Identities = 72/231 (31%), Positives = 96/231 (41%), Gaps = 38/231 (16%)

Query: 28  PQKFTRAALPAVRPAPRE-----ARKSLAEVEAGKDASSRDPVRQLETP-----GQGFAA 77
           PQ+   AA  A   A R       R+    +EA +   +R+ V +   P      + F +
Sbjct: 118 PQELAAAAAAAAATAARNNPEPGGRRPEGGLEADELLPAREKVAEPPPPPPPHFSETFPS 177

Query: 78  SLLTRQAHPHHSSDARDAAGPGAGQASPLEGSEAEEEEDAEDPRRPRLRERAARLLPGLA 137
                + +         +AG  AG     EGS  + E+D                  G  
Sbjct: 178 LPAEGKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDD------------------GFL 219

Query: 138 RSPDAPAGALASGEPCEDG--GGGPVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYE 195
            S     GAL   +P   G  G G     P + G   P          K RR RTAFT E
Sbjct: 220 DSSAGGPGALLGPKPKLKGSLGTGAEEGAPVTAGVTAPG--------GKSRRRRTAFTSE 271

Query: 196 QLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPG 246
           QL+ LE +F   +YLS+ ER  +A +L L+E QVKIWFQNRR KWK+   G
Sbjct: 272 QLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIKAG 322



 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 30/80 (37%), Positives = 37/80 (46%), Gaps = 11/80 (13%)

Query: 252 QVGGGAPQPGAAGGGGGGGSGGS--------PGPPGTGALHFQTFPSYSAAN--VLFPSA 301
           Q  GG   PG  GGGGGGG G +        P PP +G L +  +P +      VL  + 
Sbjct: 2   QRAGGGSAPGGNGGGGGGGPGTAFSIDSLIGPPPPRSGHLLYTGYPMFMPYRPLVLPQAL 61

Query: 302 ASFPLTAAAPG-SPFAPFLG 320
           A  PL A  P  +P A F G
Sbjct: 62  APAPLPAGLPPLAPLASFAG 81


>gi|84570137 homeobox B3 [Homo sapiens]
          Length = 431

 Score = 86.7 bits (213), Expect = 3e-17
 Identities = 62/179 (34%), Positives = 76/179 (42%), Gaps = 34/179 (18%)

Query: 156 GGGGPVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCER 215
           GGGG  +SPPGS  S               +RARTA+T  QLV LE +F   RYL    R
Sbjct: 174 GGGGGDKSPPGSAAS---------------KRARTAYTSAQLVELEKEFHFNRYLCRPRR 218

Query: 216 LNLALSLSLTETQVKIWFQNRRTKWKKQN-----PGADGAAQVGGGAPQPGAAGGGGGGG 270
           + +A  L+L+E Q+KIWFQNRR K+KK         + G     G  PQP  +  G    
Sbjct: 219 VEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTAGFMNA 278

Query: 271 ------SGGSPGPPGTGALHFQTFPSYSAANVLFPSAASFPLTAAAPGSPFAPFLGPSY 323
                 S  SP PP  G  H   +          PS    PL        + P   P Y
Sbjct: 279 LHSMTPSYESPSPPAFGKAHQNAY--------ALPSNYQPPLKGCGAPQKYPPTPAPEY 329



 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 5/60 (8%)

Query: 228 QVKIWFQNRR--TKWKKQNPGAD---GAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGA 282
           Q+  W +  R  +K K  +PG     G    GGG    G +GGGGGGG GG   PPG+ A
Sbjct: 128 QIFPWMKESRQTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAA 187


>gi|126116581 retina and anterior neural fold homeobox [Homo
           sapiens]
          Length = 346

 Score = 85.1 bits (209), Expect = 8e-17
 Identities = 72/244 (29%), Positives = 93/244 (38%), Gaps = 28/244 (11%)

Query: 108 GSEAEEEEDAEDPRRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGS 167
           G++  +      P  P+  E  +   P  A +P     A     P E G   P    P  
Sbjct: 59  GAKERDRRLGARPACPKAPEEGSEPSPPPAPAPAPEYEAPRPYCPKEPGEARPSPGLPVG 118

Query: 168 PGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTET 227
           P +   +    E    K RR RT FT  QL  LE  F  + Y  V  R  LA  ++L E 
Sbjct: 119 PATGEAKLSEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEV 178

Query: 228 QVKIWFQNRRTKWKKQ------------NPGADGAAQVGGGAPQPGAAGGGGGGGSGG-- 273
           +V++WFQNRR KW++Q            +P    +         P  AG G GGG  G  
Sbjct: 179 RVQVWFQNRRAKWRRQEKLEVSSMKLQDSPLLSFSRSPPSATLSPLGAGPGSGGGPAGGA 238

Query: 274 -------SPGPPGTGALHFQTFPSYSAANVLFPSAASFPLTAAAPGSPFAPFLGPSYLTP 326
                   P  PG GA   Q+ P +       P A S P +   P  P  PFL    L P
Sbjct: 239 LPLESWLGPPLPGGGATALQSLPGFG------PPAQSLPASYTPPPPP-PPFLNSPPLGP 291

Query: 327 FYAP 330
              P
Sbjct: 292 GLQP 295


>gi|14149728 BarH-like homeobox 1 [Homo sapiens]
          Length = 327

 Score = 85.1 bits (209), Expect = 8e-17
 Identities = 55/147 (37%), Positives = 72/147 (48%), Gaps = 39/147 (26%)

Query: 184 KPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 243
           KPR+ARTAFT  QL  LE  F   +YLSV +R+ LA SL+LT+TQVK W+QNRRTKWK+Q
Sbjct: 177 KPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQ 236

Query: 244 NP-GADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPSAA 302
              G +  A+ G                                   +YSA   +FPS  
Sbjct: 237 TAVGLELLAEAG-----------------------------------NYSALQRMFPSPY 261

Query: 303 SFPLTAAA---PGSPFAPFLGPSYLTP 326
            +P +  +   PG+    + GPS   P
Sbjct: 262 FYPQSLVSNLDPGAALYLYRGPSAPPP 288


>gi|6633798 BarH-like homeobox 2 [Homo sapiens]
          Length = 279

 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 49/122 (40%), Positives = 66/122 (54%), Gaps = 9/122 (7%)

Query: 121 RRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEP 180
           R+P +        PG+A++       +      E  GG  + S       P PR++    
Sbjct: 78  RQPTVISHLVPATPGIAQA--LSCHQVTEAVSAEAPGGEALASSESETEQPTPRQK---- 131

Query: 181 NCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKW 240
              KPRR+RT FT  QL+ LE KF+  +YLS  +RL+LA SL LT+ QVK W+QNRR KW
Sbjct: 132 ---KPRRSRTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQSLGLTQLQVKTWYQNRRMKW 188

Query: 241 KK 242
           KK
Sbjct: 189 KK 190


>gi|116805350 homeo box (H6 family) 1 [Homo sapiens]
          Length = 348

 Score = 84.3 bits (207), Expect = 1e-16
 Identities = 93/312 (29%), Positives = 116/312 (37%), Gaps = 105/312 (33%)

Query: 95  AAGPGAGQASPLEGSEAEEEEDAEDP--------RRPRLRERA---------------AR 131
           A   GAG+A+  +GS  +EEED +DP        RR RL+ R                A 
Sbjct: 27  AEAKGAGRATQGDGSREDEEEDDDDPEDEDAEQARRRRLQRRRQLLAGTGPGGEARARAL 86

Query: 132 LLPGLA----RSPDAPA-------GALASGEPCEDGGGGPVRSP---------------- 164
           L PG      R P  P        G  A   P   GG G   SP                
Sbjct: 87  LGPGALGLGPRPPPGPGPPFALGCGGAARWYPRAHGGYGGGLSPDTSDRDSPETGEEMGR 146

Query: 165 -----PGSPGSPRPRRRRLEPNCAKP-------------------------------RRA 188
                P  PG    +R   E     P                               ++ 
Sbjct: 147 AEGAWPRGPGPGAVQREAAELAARGPAAGTEEASELAEVPAAAGETRGGVGVGGGRKKKT 206

Query: 189 RTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGAD 248
           RT F+  Q+  LE+ F   RYLS  ER  LA SL LTETQVKIWFQNRR KWK+Q     
Sbjct: 207 RTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQL---- 262

Query: 249 GAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPSAASFPLTA 308
            AA++   +  P            G+        L+ ++ P+ +AA    P+   FPL  
Sbjct: 263 -AAELEAASLSP-----------PGAQRLVRVPVLYHESPPAAAAAGP--PATLPFPLAP 308

Query: 309 AAPGSPFAPFLG 320
           AAP  P  P LG
Sbjct: 309 AAPAPP-PPLLG 319


>gi|148613882 homeobox A4 [Homo sapiens]
          Length = 320

 Score = 83.6 bits (205), Expect = 2e-16
 Identities = 75/279 (26%), Positives = 104/279 (37%), Gaps = 36/279 (12%)

Query: 41  PAPREARKSLAEVEAGKDASSRDPVRQLETPGQGFAASLLTRQAHPHHSS-------DAR 93
           PAP      L + +       R+P      P      +      +P H +         R
Sbjct: 46  PAPPTQHLPLQQPQLPHAGGGREPTASYYAPRTAREPAYPAAALYPAHGAADTAYPYGYR 105

Query: 94  DAAGPG---------AGQASPLEGSEAEE--EEDAEDPRRPRLRERAA-RLLPGLARSPD 141
             A PG         A    P  G  A    +     P +PR    AA R       +P 
Sbjct: 106 GGASPGRPPQPEQPPAQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRRCEAAPATPG 165

Query: 142 APAGALASGEPCEDGGGGPV----RSPPGSPGSPRPRRRRLEP--NCAKPRRARTAFTYE 195
            PAG  A   P       P+    + P   P   +     + P  N  +P+R+RTA+T +
Sbjct: 166 VPAGGSAPACPLLLADKSPLGLKGKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQ 225

Query: 196 QLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADGAAQVGG 255
           Q++ LE +F   RYL+   R+ +A +L L+E QVKIWFQNRR KWKK +           
Sbjct: 226 QVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHK---------- 275

Query: 256 GAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAA 294
             P            S G PG   T + H    P  S +
Sbjct: 276 -LPNTKMRSSNSASASAGPPGKAQTQSPHLHPHPHPSTS 313


>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
          Length = 283

 Score = 82.8 bits (203), Expect = 4e-16
 Identities = 86/280 (30%), Positives = 115/280 (41%), Gaps = 36/280 (12%)

Query: 62  RDPVRQLETPGQGFAAS-----LLTRQAHPHHSSDARDAAGPGAGQASPLEGSEAEEEED 116
           +DP      P   F+AS      + RQ  P        A G    Q SP + S  E    
Sbjct: 15  KDPCAFQRGPAPEFSASPPACLYMGRQPPPPPPHPFPGALG-ALEQGSPPDISPYEVPPL 73

Query: 117 AEDPRRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRR 176
           A+DP    L       LP     P  PAG      P  +G    V   P     P P  +
Sbjct: 74  ADDPAVAHLHHH----LPAQLALPHPPAG------PFPEGAEPGVLEEPNRVQLPFPWMK 123

Query: 177 RLEPNC-----------AKP---RRARTAFTYEQLVALENKFRATRYLSVCERLNLALSL 222
             + +            A+P   +R RTA+T  QL+ LE +F   +Y+S   R+ LA+ L
Sbjct: 124 STKAHAWKGQWAGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVML 183

Query: 223 SLTETQVKIWFQNRRTKWKK-QNPGADGAAQVGGGA---PQPGAAGGGGGGGSGGSPGPP 278
           +LTE  +KIWFQNRR KWKK ++    G   VGGG    P+   A   G       P PP
Sbjct: 184 NLTERHIKIWFQNRRMKWKKEEDKKRGGGTAVGGGGVAEPEQDCAVTSGEELLALPPPPP 243

Query: 279 GTGALHFQTFPSYSAANVLFPSAASFPL-TAAAPGSPFAP 317
             GA+     P  +    L P  ++ P  ++ AP  P  P
Sbjct: 244 PGGAVP-PAAPVAAREGRLPPGLSASPQPSSVAPRRPQEP 282


>gi|126090909 engrailed homeobox 1 [Homo sapiens]
          Length = 392

 Score = 81.6 bits (200), Expect = 9e-16
 Identities = 82/274 (29%), Positives = 111/274 (40%), Gaps = 33/274 (12%)

Query: 11  AAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLA------EVEAGKDASSRDP 64
           AA  H   +F + +IL P    +   P  +     A +  A      E + G+ A+ RDP
Sbjct: 96  AAQLHRTTNFFIDNILRPDFGCKKEQPPPQLLVAAAARGGAGGGGRVERDRGQTAAGRDP 155

Query: 65  VRQLETPGQGFAASLLTRQAH---PHHSSDARDAAGPG-AGQASPLEGSEAEEEEDAEDP 120
           V  L T   G A+ L    A+   P  S  A   AG   AG  +    + A     A   
Sbjct: 156 VHPLGTRAPGAASLLCAPDANCGPPDGSQPAAAGAGASKAGNPAAAAAAAAAAVAAAAAA 215

Query: 121 RRPRLRERAARLLPGLARSPDAPAGALAS-GEPC----EDGGGGPV-------------- 161
              +  +       G A SP A        G P         GGPV              
Sbjct: 216 AAAKPSDTGGGGSGGGAGSPGAQGTKYPEHGNPAILLMGSANGGPVVKTDSQQPLVWPAW 275

Query: 162 ----RSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLN 217
               R        PR R+ + + N  + +R RTAFT EQL  L+ +F+A RY++   R  
Sbjct: 276 VYCTRYSDRPSSGPRTRKLKKKKNEKEDKRPRTAFTAEQLQRLKAEFQANRYITEQRRQT 335

Query: 218 LALSLSLTETQVKIWFQNRRTKWKKQNPGADGAA 251
           LA  LSL E+Q+KIWFQN+R K KK     +G A
Sbjct: 336 LAQELSLNESQIKIWFQNKRAKIKKATGIKNGLA 369



 Score = 37.0 bits (84), Expect = 0.024
 Identities = 16/31 (51%), Positives = 17/31 (54%)

Query: 250 AAQVGGGAPQPGAAGGGGGGGSGGSPGPPGT 280
           AA     A +P   GGGG GG  GSPG  GT
Sbjct: 210 AAAAAAAAAKPSDTGGGGSGGGAGSPGAQGT 240



 Score = 31.6 bits (70), Expect = 1.0
 Identities = 19/43 (44%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 241 KKQNPGADGAAQVGGGAPQPGAAGGG----GGGGSGGSPGPPG 279
           K  NP A  AA     A    AA       GGGGSGG  G PG
Sbjct: 194 KAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGGGAGSPG 236


>gi|148746211 NK2 transcription factor related, locus 3 [Homo
           sapiens]
          Length = 364

 Score = 81.6 bits (200), Expect = 9e-16
 Identities = 56/153 (36%), Positives = 74/153 (48%), Gaps = 24/153 (15%)

Query: 171 PRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVK 230
           P+PR RR         + R  F+  Q+  LE +F+  RYLS  ER +LA SL LT TQVK
Sbjct: 143 PKPRSRR---------KPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVK 193

Query: 231 IWFQNRRTKWKKQNPGADGAAQVGGGAPQP-------------GAAGGGGGGGSGGSPGP 277
           IWFQNRR K K+Q    D + ++G  AP P             G         + G+P  
Sbjct: 194 IWFQNRRYKCKRQR--QDKSLELGAHAPPPPPRRVAVPVLVRDGKPCVTPSAQAYGAPYS 251

Query: 278 PGTGALHFQTFPSYSAANVLFPSAASFPLTAAA 310
            G  A  + +FP+Y   N    +AA+    AAA
Sbjct: 252 VGASAYSYNSFPAYGYGNSAAAAAAAAAAAAAA 284


>gi|24497513 homeobox A3 isoform a [Homo sapiens]
          Length = 443

 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 61/180 (33%), Positives = 80/180 (44%), Gaps = 26/180 (14%)

Query: 95  AAGPGAGQASPLEGSEAEEEEDAEDPRRPRLRER--AARLLPGLARSPD---APAGALAS 149
           AA P    ASP + + +     A   + P L     A ++ P +  S         + +S
Sbjct: 117 AAPPPPSSASPPQNA-SNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSS 175

Query: 150 GEPCEDGGGGPVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRY 209
           GE C        +SPPG   S               +RARTA+T  QLV LE +F   RY
Sbjct: 176 GESCAGD-----KSPPGQASS---------------KRARTAYTSAQLVELEKEFHFNRY 215

Query: 210 LSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADGAAQVGGGAPQPGAAGGGGGG 269
           L    R+ +A  L+LTE Q+KIWFQNRR K+KK   G       GG +P       G GG
Sbjct: 216 LCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGG 275


>gi|13562112 homeobox A3 isoform a [Homo sapiens]
          Length = 443

 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 61/180 (33%), Positives = 80/180 (44%), Gaps = 26/180 (14%)

Query: 95  AAGPGAGQASPLEGSEAEEEEDAEDPRRPRLRER--AARLLPGLARSPD---APAGALAS 149
           AA P    ASP + + +     A   + P L     A ++ P +  S         + +S
Sbjct: 117 AAPPPPSSASPPQNA-SNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSS 175

Query: 150 GEPCEDGGGGPVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRY 209
           GE C        +SPPG   S               +RARTA+T  QLV LE +F   RY
Sbjct: 176 GESCAGD-----KSPPGQASS---------------KRARTAYTSAQLVELEKEFHFNRY 215

Query: 210 LSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADGAAQVGGGAPQPGAAGGGGGG 269
           L    R+ +A  L+LTE Q+KIWFQNRR K+KK   G       GG +P       G GG
Sbjct: 216 LCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGG 275


>gi|39930383 BarH-like homeobox 2 [Homo sapiens]
          Length = 387

 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 57/161 (35%), Positives = 83/161 (51%), Gaps = 15/161 (9%)

Query: 95  AAGPGAGQASPLEGSEAEEEEDAEDPRRPRLRERAARLLPGLARSPDAPAGALASGEPCE 154
           A  P +   S    +  +E     +  RP+L +  ++    L +  D+ +     G   E
Sbjct: 156 ACAPYSTSVSSPHHTPKQESNAVHESFRPKLEQEDSKTK--LDKREDSQSDIKCHGTK-E 212

Query: 155 DGGGGPVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCE 214
           +G     R    S  SP  R +       KPR+ARTAF+  QL  LE  F   +YLSV +
Sbjct: 213 EGD----REITSSRESPPVRAK-------KPRKARTAFSDHQLNQLERSFERQKYLSVQD 261

Query: 215 RLNLALSLSLTETQVKIWFQNRRTKWKKQNP-GADGAAQVG 254
           R++LA +L+LT+TQVK W+QNRRTKWK+Q   G +  A+ G
Sbjct: 262 RMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAEAG 302


>gi|45593144 gastrulation brain homeo box 2 [Homo sapiens]
          Length = 348

 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 64/174 (36%), Positives = 84/174 (48%), Gaps = 28/174 (16%)

Query: 90  SDARDAAGPGAGQASPLEGSEAE---------------EEEDAEDPRRPRLRERAARLLP 134
           +DA D  G  A + S L  S AE               +E   ED   P+ +E +  L  
Sbjct: 146 ADAEDGKGFLAKEGSLLAFSAAETVQASLVGAVRGQGKDESKVEDD--PKGKEESFSLES 203

Query: 135 GLARSPDAPAGALASGEPCEDGGGGPVRSPP--GSPGSPRPRRRRLEPNCAKPRRARTAF 192
            +  S D      A+ +  ED G     +PP  G+ GS          +  K RR RTAF
Sbjct: 204 DVDYSSDDNLTGQAAHKE-EDPGHALEETPPSSGAAGSTT--------STGKNRRRRTAF 254

Query: 193 TYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPG 246
           T EQL+ LE +F   +YLS+ ER  +A +L L+E QVKIWFQNRR KWK+   G
Sbjct: 255 TSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVKAG 308


>gi|24497538 homeobox C4 [Homo sapiens]
          Length = 264

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 57/159 (35%), Positives = 77/159 (48%), Gaps = 20/159 (12%)

Query: 140 PDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRP---------RRRRLEPNC--AKPRRA 188
           P   +GA AS  P       P    P S  S +P             + PN    +P+R+
Sbjct: 100 PAPLSGASASPSPAPPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRS 159

Query: 189 RTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGAD 248
           RTA+T +Q++ LE +F   RYL+   R+ +A SL L+E Q+KIWFQNRR KWKK +   +
Sbjct: 160 RTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPN 219

Query: 249 GAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQT 287
              +    AP  GAA       S  S   PGT   H Q+
Sbjct: 220 TKVR---SAPPAGAA------PSTLSAATPGTSEDHSQS 249


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.132    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,493,090
Number of Sequences: 37866
Number of extensions: 1113879
Number of successful extensions: 29160
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 731
Number of HSP's that attempted gapping in prelim test: 10289
Number of HSP's gapped (non-prelim): 14252
length of query: 332
length of database: 18,247,518
effective HSP length: 103
effective length of query: 229
effective length of database: 14,347,320
effective search space: 3285536280
effective search space used: 3285536280
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.